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Homology
BLAST of mRNA_E-fasciculatus_F_contig1519.3669.1 vs. uniprot
Match: D7FSB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB8_ECTSI) HSP 1 Score: 479 bits (1233), Expect = 3.370e-163 Identity = 258/304 (84.87%), Postives = 265/304 (87.17%), Query Frame = 1
Query: 946 VWRMLYIDPDVADPKHV----AELLESAASQALGWACVFDVATDIVEALGDLRGDTMSVYRGVFINESLFRHKKLSQGKTPDKSILGKHLSKFLREAGMSSARIILLVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGATAAPLSNPEPLSVPFPGQYRSRPLDDGVPLAAAAVAAATAAA--GTTPSTIHMGAPVLTPSQYPACLGFTPFTHPMLNPYNLPLALLRSGKPKVWPRRRYTNIAPREKDEELGDQSAPALDGASPDDVTAAADECGAATTVADQTAGQAI 1839
VW ML + P P+ + AELLESAASQALGWACVFDVATDIVEAL DLRGDTMSVYRGVFINESLFRHKKL+QGK PDKSILGKHLSKFLREAGMSSARIILLVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGA AAPLSNPEPL VPFPGQYRSRP +GVPLAA GTTPSTIHMGAP L SQYPACLGFTPFTHPM NPYNLPLALLRSGKPK WPRRRYTNIAPREKDE+LGDQSAP LDGASPD VTAAADECGAA VA+QTAGQAI
Sbjct: 53 VWTMLSLTPSAVIPRSMTTRTAELLESAASQALGWACVFDVATDIVEALADLRGDTMSVYRGVFINESLFRHKKLNQGKAPDKSILGKHLSKFLREAGMSSARIILLVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGAAAAPLSNPEPLGVPFPGQYRSRP-PEGVPLAAXXXXXXXXXXXXGTTPSTIHMGAPGLASSQYPACLGFTPFTHPMFNPYNLPLALLRSGKPKAWPRRRYTNIAPREKDEDLGDQSAPVLDGASPD-VTAAADECGAAAAVAEQTAGQAI 354
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | Response receiver |
| Ec32 ortholog | Ec-20_004930.1 |
| Exons | 3 |
| Model size | 1842 |
| Cds size | 1491 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1519.3669.1 >prot_E-fasciculatus_F_contig1519.3669.1 ID=prot_E-fasciculatus_F_contig1519.3669.1|Name=mRNA_E-fasciculatus_F_contig1519.3669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=497bp
MARTRGGGVVSGSSARPRRSFGKANLAGKRGSGVAVLPGLPPASTGGTET
VAAAPPPFPGSGSTFARLAREPPTLSPSPLGLGNYLNFRSQNSGTLTMGD
RAMENDPMSDTAGAAAGGDQDGGGGGDGDDVGDADFLQGIFDEAIGLDDD
IADSINCYPSVDDYEDSRGGAEKRNTNQDHSKRRAAVRRSTLSPPKVPVW
RMLYIDPDVADPKHVAELLESAASQALGWACVFDVATDIVEALGDLRGDT
MSVYRGVFINESLFRHKKLSQGKTPDKSILGKHLSKFLREAGMSSARIIL
LVAGDVDFDTADAGLHGLSAVLRKPFTKTGLMDILRGLYLSNEPRSGATA
APLSNPEPLSVPFPGQYRSRPLDDGVPLAAAAVAAATAAAGTTPSTIHMG
APVLTPSQYPACLGFTPFTHPMLNPYNLPLALLRSGKPKVWPRRRYTNIA
PREKDEELGDQSAPALDGASPDDVTAAADECGAATTVADQTAGQAI* back to topmRNA from alignment at E-fasciculatus_F_contig1519:624..3294+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1519.3669.1 ID=mRNA_E-fasciculatus_F_contig1519.3669.1|Name=mRNA_E-fasciculatus_F_contig1519.3669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2671bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:624..3294+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCCGCACGAGGACACGTCCTTCGCCTATGCTAGGATCTTCTGCATGCAG
ACTGGATCCGATCTTTTCTTTCCGTTTCCTTTCATACTCGGGAGAGAGTG
CGATCAAACACTAGTCTGATCTCACACGCGGCCGTGGATACCGAGAGGAA
CTCAACACAAGCTGGGAGGACACTTCCACCATACGCACCCAGCCAAAGCG
ACAGCCATCTTTCTGTTGCAAGCCTTGGGCAGGATCGACCGCAAGTTCGG
TGTTTGTGGAAAGAGCATAACACCTGCACAATCCATCCACGACCTACGCA
GTTATCCTGTCGTGATAAAAACATCGGCCGGTGGAACCTGCCGGGCTCCA
AATGGCGCGTACAAGGGGAGGTGGCGTAGTGAGCGGCTCGTCTGCCCGGC
CACGTCGGAGTTTTGGGAAAGCAAAGTGAGCCTGTTTTGTCGTTGTGCGA
TGAACGATTATATTTCGATATTTCAGTAACGCGGAAAAGCAGGGTCTTGA
CACATGAATTGCATACCATGGTACAATTGTATGTACTACAGCAGTAGCAG
CAGTATCGACAGCACGGCTGGCTGCAGACCAGAATTTAGAGGCGCCCGAG
AGACAGGAATAGTATTCAGACAGGAATACGTATGGAACACGACACTGCTT
GCAGGGCGTGACGACAGGACTGCCGAGGTTTCATATTGTTTGCCTTCCAC
CATTTCATTTCCGTGCCGTTTTGTCTGCATGTACTTTTTCATCTAGGCCA
GATCTCGTGTTGTCGACGTGCTCGGCTCGTTGTGCTCTAAGAGTTCGTCA
AAGGTTCTCATCGCTCTCCAGTCGATGGTGAAGGTGAGCCATATGTATGT
ACGAATCTCTTTCCCATGCCCTCATGACATCAGCGTGCCGTCATCCGGTC
GGCCCACGATTTGTCCTGGTTTGTGCATCACGTCTAGTTTGGCAGGAAAA
AGAGGGAGCGGTGTGGCCGTGCTTCCTGGGCTACCTCCTGCTTCAACGGG
AGGGACAGAGACCGTGGCCGCCGCCCCACCACCATTTCCTGGCTCTGGCA
GCACCTTTGCGAGACTGGCAAGGGAACCGCCAACGCTGTCGCCAAGCCCT
CTTGGATTAGGGAACTACCTGAATTTTCGATCGCAGAATAGTGGAACCTT
GACGATGGGGGATAGGGCGATGGAGAATGACCCAATGTCGGACACAGCAG
GAGCAGCAGCAGGTGGGGACCAAGACGGCGGTGGCGGTGGAGATGGAGAC
GACGTCGGGGATGCTGATTTCCTTCAAGGGATATTTGATGAGGCCATCGG
CCTGGACGATGATATCGCTGACTCCATCAACTGTTATCCCTCGGTCGATG
ACTACGAGGACAGTAGGTGCGTGTTTGTACCTGACGAGGAGAAACTGTAT
CCATCCGTAAATATAGCCAGCTGGCAACAGAGTGCTACAATAGTTTGAGT
GCACGGAGCCAGATCCACCGATGATGGCCTGTGACTTGTCTAACACGAGT
TGCACTGAACTTGCAAGTAGCTGCAGGGGAGCCACGGAGGTACTGTAGTG
CGTGCAGTGCTGGCGCTTGTTGCAGTCCCGATTGACTACAAGGACGTTGA
TTTGAAACACACCGCTTTTCGTTAAGCCTAAAATCTTGAGCAGCTTGTTT
GTTTGGACTTCTCCCGGTGTTTCTGTATTCCAGGGGAGGTGCGGAAAAAC
GCAACACAAATCAGGATCACTCCAAGCGGCGGGCTGCCGTGCGAAGGTCT
ACGCTTTCTCCGCCAAAGGTCCCCGTGTGGCGCATGCTGTACATCGATCC
CGATGTGGCCGATCCGAAACACGTCGCGGAACTATTGGAGAGTGCCGCTT
CGCAAGCGCTAGGATGGGCTTGCGTGTTCGACGTGGCGACAGACATCGTG
GAGGCGCTGGGAGATCTTCGTGGAGACACCATGTCGGTGTACCGGGGGGT
CTTCATCAACGAGTCGCTATTCCGCCACAAGAAGCTGAGCCAAGGGAAAA
CGCCGGACAAATCGATCTTGGGCAAGCACCTGTCTAAGTTTCTTCGGGAA
GCCGGGATGTCGAGCGCCCGCATCATCCTGCTCGTGGCTGGCGACGTCGA
CTTCGACACCGCCGATGCCGGATTGCACGGCCTTAGCGCCGTCTTGCGAA
AACCCTTCACGAAGACCGGCTTGATGGATATCTTGCGCGGCCTGTACCTT
AGCAACGAGCCGAGGTCTGGAGCTACGGCGGCCCCATTGTCAAACCCGGA
ACCGCTCAGCGTTCCGTTTCCTGGGCAGTACAGATCAAGGCCACTAGACG
ACGGAGTTCCATTAGCGGCGGCCGCGGTGGCGGCGGCGACAGCAGCAGCA
GGAACCACTCCGTCTACCATCCACATGGGCGCGCCCGTTCTTACACCGTC
TCAATACCCGGCGTGCTTGGGGTTCACGCCGTTCACTCACCCAATGCTCA
ATCCGTATAACTTGCCTCTAGCCTTGCTTCGATCAGGGAAGCCAAAAGTG
TGGCCCCGGAGAAGGTACACCAACATCGCCCCAAGGGAGAAAGATGAGGA
GCTTGGTGACCAGTCTGCCCCGGCGCTGGATGGCGCAAGTCCGGACGATG
TCACGGCGGCAGCCGATGAGTGCGGTGCTGCTACAACCGTCGCGGATCAG
ACCGCTGGGCAGGCGATTTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1519:624..3294+ >mRNA_E-fasciculatus_F_contig1519.3669.1 ID=mRNA_E-fasciculatus_F_contig1519.3669.1|Name=mRNA_E-fasciculatus_F_contig1519.3669.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2982bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1519:624..3294+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCGTACAAGGGGAGGTGGCGTAGTGAGCGGCTCGTCTGCCCGGCC
ACGTCGGAGTTTTGGGAAAGCAAAATGGCGCGTACAAGGGGAGGTGGCGT
AGTGAGCGGCTCGTCTGCCCGGCCACGTCGGAGTTTTGGGAAAGCAAATT
TGGCAGGAAAAAGAGGGAGCGGTGTGGCCGTGCTTCCTGGGCTACCTCCT
GCTTCAACGGGAGGGACAGAGACCGTGGCCGCCGCCCCACCACCATTTCC
TGGCTCTGGCAGCACCTTTGCGAGACTGGCAAGGGAACCGCCAACGCTGT
CGCCAAGCCCTCTTGGATTAGGGAACTACCTGAATTTTCGATCGCAGAAT
AGTGGAACCTTGACGATGGGGGATAGGGCGATGGAGAATGACCCAATGTC
GGACACAGCAGGAGCAGCAGCAGGTGGGGACCAAGACGGCGGTGGCGGTG
GAGATGGAGACGACGTCGGGGATGCTGATTTCCTTCAAGGGATATTTGAT
GAGGCCATCGGCCTGGACGATGATATCGCTGACTCCATCAACTGTTATCC
CTCGGTCGATGACTACGAGGACAGTAGTTTGGCAGGAAAAAGAGGGAGCG
GTGTGGCCGTGCTTCCTGGGCTACCTCCTGCTTCAACGGGAGGGACAGAG
ACCGTGGCCGCCGCCCCACCACCATTTCCTGGCTCTGGCAGCACCTTTGC
GAGACTGGCAAGGGAACCGCCAACGCTGTCGCCAAGCCCTCTTGGATTAG
GGAACTACCTGAATTTTCGATCGCAGAATAGTGGAACCTTGACGATGGGG
GATAGGGCGATGGAGAATGACCCAATGTCGGACACAGCAGGAGCAGCAGC
AGGTGGGGACCAAGACGGCGGTGGCGGTGGAGATGGAGACGACGTCGGGG
ATGCTGATTTCCTTCAAGGGATATTTGATGAGGCCATCGGCCTGGACGAT
GATATCGCTGACTCCATCAACTGTTATCCCTCGGTCGATGACTACGAGGA
CAGTAGGGGAGGTGCGGAAAAACGCAACACAAATCAGGATCACTCCAAGC
GGCGGGCTGCCGTGCGAAGGTCTACGCTTTCTCCGCCAAAGGTCCCCGTG
TGGCGCATGCTGTACATCGATCCCGATGTGGCCGATCCGAAACACGTCGC
GGAACTATTGGAGAGTGCCGCTTCGCAAGCGCTAGGATGGGCTTGCGTGT
TCGACGTGGCGACAGACATCGTGGAGGCGCTGGGAGATCTTCGTGGAGAC
ACCATGTCGGTGTACCGGGGGGTCTTCATCAACGAGTCGCTATTCCGCCA
CAAGAAGCTGAGCCAAGGGAAAACGCCGGACAAATCGATCTTGGGCAAGC
ACCTGTCTAAGTTTCTTCGGGAAGCCGGGATGTCGAGCGCCCGCATCATC
CTGCTCGTGGCTGGCGACGTCGACTTCGACACCGCCGATGCCGGATTGCA
CGGCCTTAGCGCCGTCTTGCGAAAACCCTTCACGAAGACCGGCTTGATGG
ATATCTTGCGCGGCCTGTACCTTAGCAACGAGCCGAGGTCTGGAGCTACG
GCGGCCCCATTGTCAAACCCGGAACCGCTCAGCGTTCCGTTTCCTGGGCA
GTACAGATCAAGGCCACTAGACGACGGAGTTCCATTAGCGGCGGCCGCGG
TGGCGGCGGCGACAGCAGCAGCAGGAACCACTCCGTCTACCATCCACATG
GGCGCGCCCGTTCTTACACCGTCTCAATACCCGGCGTGCTTGGGGTTCAC
GCCGTTCACTCACCCAATGCTCAATCCGTATAACTTGCCTCTAGCCTTGC
TTCGATCAGGGAAGCCAAAAGTGTGGCCCCGGAGAAGGTACACCAACATC
GCCCCAAGGGAGAAAGATGAGGAGCTTGGTGACCAGTCTGCCCCGGCGCT
GGATGGCGCAAGTCCGGACGATGTCACGGCGGCAGCCGATGAGTGCGGTG
CTGCTACAACCGTCGCGGATCAGACCGCTGGGCAGGCGATTTAGGGGAGG
TGCGGAAAAACGCAACACAAATCAGGATCACTCCAAGCGGCGGGCTGCCG
TGCGAAGGTCTACGCTTTCTCCGCCAAAGGTCCCCGTGTGGCGCATGCTG
TACATCGATCCCGATGTGGCCGATCCGAAACACGTCGCGGAACTATTGGA
GAGTGCCGCTTCGCAAGCGCTAGGATGGGCTTGCGTGTTCGACGTGGCGA
CAGACATCGTGGAGGCGCTGGGAGATCTTCGTGGAGACACCATGTCGGTG
TACCGGGGGGTCTTCATCAACGAGTCGCTATTCCGCCACAAGAAGCTGAG
CCAAGGGAAAACGCCGGACAAATCGATCTTGGGCAAGCACCTGTCTAAGT
TTCTTCGGGAAGCCGGGATGTCGAGCGCCCGCATCATCCTGCTCGTGGCT
GGCGACGTCGACTTCGACACCGCCGATGCCGGATTGCACGGCCTTAGCGC
CGTCTTGCGAAAACCCTTCACGAAGACCGGCTTGATGGATATCTTGCGCG
GCCTGTACCTTAGCAACGAGCCGAGGTCTGGAGCTACGGCGGCCCCATTG
TCAAACCCGGAACCGCTCAGCGTTCCGTTTCCTGGGCAGTACAGATCAAG
GCCACTAGACGACGGAGTTCCATTAGCGGCGGCCGCGGTGGCGGCGGCGA
CAGCAGCAGCAGGAACCACTCCGTCTACCATCCACATGGGCGCGCCCGTT
CTTACACCGTCTCAATACCCGGCGTGCTTGGGGTTCACGCCGTTCACTCA
CCCAATGCTCAATCCGTATAACTTGCCTCTAGCCTTGCTTCGATCAGGGA
AGCCAAAAGTGTGGCCCCGGAGAAGGTACACCAACATCGCCCCAAGGGAG
AAAGATGAGGAGCTTGGTGACCAGTCTGCCCCGGCGCTGGATGGCGCAAG
TCCGGACGATGTCACGGCGGCAGCCGATGAGTGCGGTGCTGCTACAACCG
TCGCGGATCAGACCGCTGGGCAGGCGATTTAG back to top
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