mRNA_E-fasciculatus_F_contig15183.3667.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15183.3667.1
Unique NamemRNA_E-fasciculatus_F_contig15183.3667.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: D7FHE2_ECTSI (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE2_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.230e-51
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTP 267
            AA  + VDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCE+LVRSAGYPHTSIWRPGLLGRGSKA+GVEK+ARFLVTP
Sbjct:  116 AANFKKVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEKLVRSAGYPHTSIWRPGLLGRGSKAKGVEKVARFLVTP 204
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A835ZFB8_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB8_9STRA)

HSP 1 Score: 102 bits (253), Expect = 9.210e-25
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:   19 VDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            +D+ YLE +  +C+ A V HFSLV++ GASASSP LY K KG+CE  V+  G+   SIW+PGLLGRG KAR VE+M  +LV  + V
Sbjct:   97 IDYGYLEQIAPVCKGARVRHFSLVTAAGASASSPFLYMKTKGRCENFVKGLGFALVSIWQPGLLGRGEKARFVERMTAYLVREIPV 182
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A3M6TV87_POCDA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TV87_POCDA)

HSP 1 Score: 90.1 bits (222), Expect = 7.110e-20
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            AA  + VDF Y+    ++ + A V   SLVSSQGASASS  LY K KGQ E  ++   +P+TSI+RPG L RGSK R VEKMA+ ++T + V
Sbjct:  112 AAAFKHVDFDYVVNCAKIAKEADVPQVSLVSSQGASASSSFLYLKTKGQVENALKDMQFPNTSIFRPGFLDRGSKQRFVEKMAKLVMTSIPV 203
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A2B4T324_STYPI (Oxidoreductase HTATIP2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4T324_STYPI)

HSP 1 Score: 87.4 bits (215), Expect = 7.130e-19
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            AA  + VDF Y+    ++ + A V   SLV+SQGAS SS  LY K KG+ E  ++   +PHTSI+RPG L RGSK R VEKMA+ ++T + V
Sbjct:  109 AAAFKHVDFDYVVNCAKVAKEADVPQVSLVTSQGASTSSFFLYLKTKGEVENALKDMQFPHTSIFRPGFLDRGSKQRFVEKMAKLVMTSIPV 200
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: L8HE84_ACACA (HIV1 Tat interactive protein 2, 30kDa, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HE84_ACACA)

HSP 1 Score: 83.6 bits (205), Expect = 3.720e-18
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   19 VDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            +D  Y      LC+  GV HF L++S G++ +S  LYPK KGQ E+ ++   +  T+IWRPGLLGRG KAR VEK+A+++ + + V
Sbjct:   37 IDHGYTVKFGSLCKDHGVKHFHLLTSMGSNPNSWFLYPKTKGQNEEDIKEMDFARTTIWRPGLLGRGDKARLVEKLAKYVSSEMPV 122
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A6B2LHD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LHD6_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 4.300e-18
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   13 RAVDFSYLEGVCQLC-RVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            R VD++Y+    Q   +  GV HF L++S G+  +S  LYP+ KGQ E  V   G+ HTSI+RPGLL RGS AR VEK+A F+ + + V
Sbjct:   70 RLVDYTYVANFAQFALKHCGVTHFHLLTSMGSDKNSWFLYPRTKGQIEAFVSDLGFKHTSIYRPGLLDRGSDARTVEKIASFVASALSV 158
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A835T836_CHLIN (NAD(P)-bd_dom domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T836_CHLIN)

HSP 1 Score: 83.6 bits (205), Expect = 5.910e-18
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:    1 AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSP---------LLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFL 258
            AA  + VD+ Y+    +L +  GV HFSLVS+QGA+A  P         LLY K KG  EQ V   G+P TSI+RPG+L RG+KAR  EK+  +L
Sbjct:   34 AAAFKKVDYDYVAATARLAKACGVKHFSLVSAQGANAKVPANDWGVFHALLYTKTKGLAEQAVLREGFPRTSIFRPGMLERGAKARTGEKLFAWL 128
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: UPI000A2A85BA (oxidoreductase HTATIP2 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A85BA)

HSP 1 Score: 84.3 bits (207), Expect = 1.110e-17
Identity = 40/88 (45.45%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   13 RAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            R +D+ Y+    ++ + +GV   + VSSQGA+A+S  LYPK KGQ E+ ++   +  TSI+RPGLLGRG K R VEK+A +++ P+ V
Sbjct:  119 RHIDYDYVVNCAKVAKDSGVKFVTYVSSQGANANSWFLYPKXKGQVEEALKEMKFQSTSIYRPGLLGRGQKNRTVEKVAAWVMKPIPV 206
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A8J3E5_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J3E5_CHLRE)

HSP 1 Score: 83.6 bits (205), Expect = 1.660e-17
Identity = 46/95 (48.42%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSP---------LLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFL 258
            AA  + VDF Y+    +L +  GV HFSLVS+ GA+A  P         LLY K KG  EQ V   G+P TSI+RPG+L RG+KAR  EKM  +L
Sbjct:   85 AAAFKKVDFDYVAATARLAKSCGVRHFSLVSATGANAKVPANDWGIFHALLYTKTKGLAEQAVLGEGFPRTSIFRPGMLERGAKARAGEKMFAWL 179
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BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Match: A0A8J4F007_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F007_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 7.270e-17
Identity = 42/97 (43.30%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   13 RAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSP---------LLYPKVKGQCEQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRV 276
            + VD+ Y+    ++ +  GV HFSLVS+QGA+   P         LLY K KG  EQ     G+   SI+RPGLL RG KARG+EKMA  +++ + V
Sbjct:   97 KKVDYDYVAASARVAKEVGVTHFSLVSAQGANHKCPANDLALFHPLLYTKTKGMAEQAALEQGFSRVSIFRPGLLNRGDKARGLEKMAHHVMSHIDV 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15183.3667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHE2_ECTSI1.230e-5192.13NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A835ZFB8_9STRA9.210e-2554.65NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A3M6TV87_POCDA7.110e-2051.09NAD(P)-bd_dom domain-containing protein n=1 Tax=Po... [more]
A0A2B4T324_STYPI7.130e-1948.91Oxidoreductase HTATIP2 n=1 Tax=Stylophora pistilla... [more]
L8HE84_ACACA3.720e-1845.35HIV1 Tat interactive protein 2, 30kDa, putative n=... [more]
A0A6B2LHD6_9EUKA4.300e-1847.19Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A835T836_CHLIN5.910e-1847.37NAD(P)-bd_dom domain-containing protein n=1 Tax=Ch... [more]
UPI000A2A85BA1.110e-1745.45oxidoreductase HTATIP2 n=1 Tax=Exaiptasia diaphana... [more]
A8J3E5_CHLRE1.660e-1748.42Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A8J4F007_9CHLO7.270e-1743.30NAD(P)-bd_dom domain-containing protein n=1 Tax=Vo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15183contigE-fasciculatus_F_contig15183:195..766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D7FHE2
Preferred nameHTATIP2
KEGG koko:K17290
GOsGO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0012505,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0022603,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0036211,GO:0042981,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045765,GO:0045893,GO:0045935,GO:0045944,GO:0046777,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060548,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:0140110,GO:1901342,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.angiogenesis
EggNOG OGsCOG0702@1,KOG4039@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.6204891-CDS-E-fasciculatus_F_contig15183:194..3501622927997.6204891-CDS-E-fasciculatus_F_contig15183:194..350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15183 195..350 +
1695995782.94176-CDS-E-fasciculatus_F_contig15183:194..3501695995782.94176-CDS-E-fasciculatus_F_contig15183:194..350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15183 195..350 +
1622927997.6379375-CDS-E-fasciculatus_F_contig15183:607..7661622927997.6379375-CDS-E-fasciculatus_F_contig15183:607..766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15183 608..766 +
1695995782.9552503-CDS-E-fasciculatus_F_contig15183:607..7661695995782.9552503-CDS-E-fasciculatus_F_contig15183:607..766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15183 608..766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15183.3667.1prot_E-fasciculatus_F_contig15183.3667.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15183 195..766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15183.3667.1

>prot_E-fasciculatus_F_contig15183.3667.1 ID=prot_E-fasciculatus_F_contig15183.3667.1|Name=mRNA_E-fasciculatus_F_contig15183.3667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
AALPRAVDFSYLEGVCQLCRVAGVDHFSLVSSQGASASSPLLYPKVKGQC
EQLVRSAGYPHTSIWRPGLLGRGSKARGVEKMARFLVTPVRVGGITPTYG
RGVN*
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mRNA from alignment at E-fasciculatus_F_contig15183:195..766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15183.3667.1 ID=mRNA_E-fasciculatus_F_contig15183.3667.1|Name=mRNA_E-fasciculatus_F_contig15183.3667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=572bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15183:195..766+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCACTTCCCCGCGCAGTTGACTTTTCGTACTTGGAAGGCGTGTGCCA
GCTGTGCCGGGTGGCGGGGGTAGACCACTTCTCGCTGGTGTCGAGCCAGG
GGGCGTCGGCTTCGAGCCCGCTGCTCTACCCGAAGGTCAAGGGCCAGTGC
GAGCAGGTGCCATAATGTGTGTCTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTCGTCGTTGTCGTCGTCATTCTCGTTCTTGTGGTTATCG
TTGTCGTTGGTTGCCGTGCAGAGGCATCCAGACGACGAAAAGAAACCCTG
GTTTTGAGGTTTGGGTTCTCCTCCATGCGTCAAGACATGGGTTTACTTAT
TATTTTCTTCCGCCGAAACGTTGTTGCTGCTGTTGATGTCCCCACTTGTT
CCTCGGGGGGAAGCTTGTTCGATCAGCCGGCTACCCGCACACGAGCATCT
GGAGGCCGGGGCTTCTTGGGAGGGGCAGCAAGGCTAGAGGTGTGGAGAAG
ATGGCCCGCTTCTTGGTTACCCCGGTGAGAGTGGGAGGTATTACCCCGAC
GTATGGGAGAGGAGTGAATTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15183:195..766+

>mRNA_E-fasciculatus_F_contig15183.3667.1 ID=mRNA_E-fasciculatus_F_contig15183.3667.1|Name=mRNA_E-fasciculatus_F_contig15183.3667.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15183:195..766+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCACTTCCCCGCGCAGTTGACTTTTCGTACTTGGAAGGCGTGTGCCA
GCTGTGCCGGGTGGCGGGGGTAGACCACTTCTCGCTGGTGTCGAGCCAGG
GGGCGTCGGCTTCGAGCCCGCTGCTCTACCCGAAGGTCAAGGGCCAGTGC
GAGCAGGCTGCACTTCCCCGCGCAGTTGACTTTTCGTACTTGGAAGGCGT
GTGCCAGCTGTGCCGGGTGGCGGGGGTAGACCACTTCTCGCTGGTGTCGA
GCCAGGGGGCGTCGGCTTCGAGCCCGCTGCTCTACCCGAAGGTCAAGGGC
CAGTGCGAGCAGCTTGTTCGATCAGCCGGCTACCCGCACACGAGCATCTG
GAGGCCGGGGCTTCTTGGGAGGGGCAGCAAGGCTAGAGGTGTGGAGAAGA
TGGCCCGCTTCTTGGTTACCCCGGTGAGAGTGGGAGGTATTACCCCGACG
TATGGGAGAGGAGTGAATTAGCTTGTTCGATCAGCCGGCTACCCGCACAC
GAGCATCTGGAGGCCGGGGCTTCTTGGGAGGGGCAGCAAGGCTAGAGGTG
TGGAGAAGATGGCCCGCTTCTTGGTTACCCCGGTGAGAGTGGGAGGTATT
ACCCCGACGTATGGGAGAGGAGTGAATTAG
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