mRNA_E-fasciculatus_F_contig15173.3661.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15173.3661.1
Unique NamemRNA_E-fasciculatus_F_contig15173.3661.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15173.3661.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.020e-19
Identity = 109/153 (71.24%), Postives = 111/153 (72.55%), Query Frame = -3 
Query:   19 RVDRDQASRQSPPGNQAREA-KGKGSSRRADPANGIGGGASPEKHGKNRRPAENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWRKMSVDSNXXXXXXVGRE---RKALSAEGGVYAPADGKGRTSSGKGGXXXXXXXPGRDGGS 465
            RVDRDQASRQSPPGNQAR A KGKG SRRADPANGIGGGASPEK G N RP   XXXXXXXXXXXXXXXXXXXXXXXX           ER RKMSVDSNXXXXXX       RKAL+A  G YAPADGKGR+ SGK         PGRDG S
Sbjct:   65 RVDRDQASRQSPPGNQARAAAKGKGPSRRADPANGIGGGASPEKAGNNCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGG-------ERGRKMSVDSNXXXXXXXXXXXXXRKALAAAEGGYAPADGKGRSWSGKV-DRAVAPPPGRDGSS 209
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BLAST of mRNA_E-fasciculatus_F_contig15173.3661.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-17
Identity = 117/162 (72.22%), Postives = 122/162 (75.31%), Query Frame = -3 
Query:    1 RRNAER-VDRDQASRQSPPGNQAREA-KGKGSSRRADPANGIGGGASPEKHGKNRRPAENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERWRKMSVDSNXXXXXXVGRERKALSAEGGVYAPADGKGRTSSGKGGXXXXXXXPGRDGGSPMPPSK 480
            RR AER VDRDQAS+QSPPGNQAR A KGKG SRR DPANGI GG SPEK GKNRRPAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXX     KAL+A  G YAPADGKGR+ SGK         PGRDG +PMPP+K
Sbjct:  176 RRTAERGVDRDQASQQSPPGNQARAAAKGKGPSRRVDPANGIFGGGSPEKAGKNRRPAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----KALAAAEGGYAPADGKGRSWSGKV-NRAVAPPPGRDGSNPMPPAK 332
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15173.3661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI13_ECTSI1.020e-1971.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ21_9PHAE1.420e-1772.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15173contigE-fasciculatus_F_contig15173:1871..2403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size534
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.0408573-CDS-E-fasciculatus_F_contig15173:1870..22631622927997.0408573-CDS-E-fasciculatus_F_contig15173:1870..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15173 1871..2263 +
1695995782.743643-CDS-E-fasciculatus_F_contig15173:1870..22631695995782.743643-CDS-E-fasciculatus_F_contig15173:1870..2263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15173 1871..2263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927997.0573256-UTR-E-fasciculatus_F_contig15173:2263..24031622927997.0573256-UTR-E-fasciculatus_F_contig15173:2263..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15173 2264..2403 +
1695995782.7544668-UTR-E-fasciculatus_F_contig15173:2263..24031695995782.7544668-UTR-E-fasciculatus_F_contig15173:2263..2403Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15173 2264..2403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15173.3661.1prot_E-fasciculatus_F_contig15173.3661.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15173 1871..2263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15173.3661.1

>prot_E-fasciculatus_F_contig15173.3661.1 ID=prot_E-fasciculatus_F_contig15173.3661.1|Name=mRNA_E-fasciculatus_F_contig15173.3661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
LGGRHRAAPVATGRRRGYRPAAFTARRSALPVRRGVDAAFRGERLTLPAN
AAAATVVAVDRHLPPPFPALPTAAAAAAAAAAADGVGTLRPSPVPRASAA
APVLSRAAVLPVLLGARSAADSVSGVRTAR*
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mRNA from alignment at E-fasciculatus_F_contig15173:1871..2403+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15173.3661.1 ID=mRNA_E-fasciculatus_F_contig15173.3661.1|Name=mRNA_E-fasciculatus_F_contig15173.3661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=533bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15173:1871..2403+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGAGGGCGGCATCGGGCTGCCCCCGTCGCGACCGGGCGGCGGCGGGG
CTACCGCCCCGCCGCCTTTACCGCTCGACGTTCGGCCCTTCCCGTCCGCA
GGGGCGTAGACGCCGCCTTCCGCGGAGAGCGCCTTACGCTCCCTGCCAAC
GCCGCCGCCGCCACTGTTGTTGCTGTCGACAGACATCTTCCGCCACCGTT
CCCCGCCCTTCCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
ACGGTGTCGGCACTCTCCGCCCCTCTCCCGTTCCTCGAGCTTCCGCCGCC
GCCCCCGTTCTCAGCCGGGCGGCGGTTCTTCCCGTGCTTCTCGGGGCTCG
CTCCGCCGCCGATTCCGTTAGCGGGGTCCGCACGGCGCGATGATCCCTTG
CCCTTGGCCTCCCTCGCCTGATTACCCGGCGGCGACTGCCGGGAGGCCTG
ATCTCGGTCAACTCTTTCGGCGTTTCGACGACGCTTCTCGTCCTCGCGCT
GCTGCGAAGTCTTCTTCGTCGCCGCCCCCCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15173:1871..2403+

>mRNA_E-fasciculatus_F_contig15173.3661.1 ID=mRNA_E-fasciculatus_F_contig15173.3661.1|Name=mRNA_E-fasciculatus_F_contig15173.3661.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15173:1871..2403+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTGGAGGGCGGCATCGGGCTGCCCCCGTCGCGACCGGGCGGCGGCGGGG
CTACCGCCCCGCCGCCTTTACCGCTCGACGTTCGGCCCTTCCCGTCCGCA
GGGGCGTAGACGCCGCCTTCCGCGGAGAGCGCCTTACGCTCCCTGCCAAC
GCCGCCGCCGCCACTGTTGTTGCTGTCGACAGACATCTTCCGCCACCGTT
CCCCGCCCTTCCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
ACGGTGTCGGCACTCTCCGCCCCTCTCCCGTTCCTCGAGCTTCCGCCGCC
GCCCCCGTTCTCAGCCGGGCGGCGGTTCTTCCCGTGCTTCTCGGGGCTCG
CTCCGCCGCCGATTCCGTTAGCGGGGTCCGCACGGCGCGATGACTTGGAG
GGCGGCATCGGGCTGCCCCCGTCGCGACCGGGCGGCGGCGGGGCTACCGC
CCCGCCGCCTTTACCGCTCGACGTTCGGCCCTTCCCGTCCGCAGGGGCGT
AGACGCCGCCTTCCGCGGAGAGCGCCTTACGCTCCCTGCCAACGCCGCCG
CCGCCACTGTTGTTGCTGTCGACAGACATCTTCCGCCACCGTTCCCCGCC
CTTCCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGACGGTGT
CGGCACTCTCCGCCCCTCTCCCGTTCCTCGAGCTTCCGCCGCCGCCCCCG
TTCTCAGCCGGGCGGCGGTTCTTCCCGTGCTTCTCGGGGCTCGCTCCGCC
GCCGATTCCGTTAGCGGGGTCCGCACGGCGCGATGA
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