mRNA_E-fasciculatus_F_contig15171.3660.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15171.3660.1
Unique NamemRNA_E-fasciculatus_F_contig15171.3660.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5JK57_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK57_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 6.050e-42
Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 2
Query:    2 EPRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            EP ++RR  KGSAR GC FEV VR HAK+HP P ITNMKL HN  V R+A+ VK RLAG+ TEEQR QVE+ T  GMKPKA+ EA QALHE+S IEIN+ A +N AASVHGA++PRDAADAYEE
Sbjct:   91 EPGVIRRNRKGSARTGCQFEVSVR-HAKSHPRPKITNMKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSKGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEE 213          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5L586_9PHAE (FAR1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L586_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 5.410e-40
Identity = 78/123 (63.41%), Postives = 96/123 (78.05%), Query Frame = 2
Query:    5 PRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            P + RR  KGSAR GCPFEV VR HAK+H WP I+NMKL HN  V R+AI+VK RLA + TEEQ  QV++ T  GMKPK +T+A +A+HE+S I+INK A +N AA+VHGA++PRDAADAYEE
Sbjct:   89 PGVQRRNVKGSARTGCPFEVSVR-HAKSHRWPRISNMKLTHNHSVDRKAIDVKLRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKAIHEDSDIDINKRAVQNAAATVHGAEKPRDAADAYEE 210          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5JAS6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS6_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.690e-39
Identity = 83/124 (66.94%), Postives = 97/124 (78.23%), Query Frame = 2
Query:    2 EPRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            EP ++RR  KGSAR GC FEV VR HA +HP P ITN+KL HN  V R+A+ VK RLAG+ TEEQR QVE+ T  GMKPKA+ EA QALHE+S IEIN+ A +N AASVHGA++PRDAADAYEE
Sbjct:   91 EPGVIRRNRKGSARTGCQFEVSVR-HANSHPRPKITNIKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSKGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEE 213          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5JNB0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.450e-38
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 EPRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGD----GMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            EP ++RR  KGSAR GC FEV VR HAK+HP P ITNMKL HN  V R+A+ VK RLAG+ TEEQR QVE+ T +    GMKPKA+ EA QALHE+S IEIN+ A +N AASVHGA++PRDAADAYEE
Sbjct:   91 EPGVIRRNRKGSARTGCQFEVSVR-HAKSHPRPKITNMKLGHNHVVDRQAMAVKLRLAGKLTEEQRGQVEKMTSEEIERGMKPKAVHEAIQALHEDSDIEINRRAVQNVAASVHGAEKPRDAADAYEE 217          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.330e-37
Identity = 78/123 (63.41%), Postives = 95/123 (77.24%), Query Frame = 2
Query:    5 PRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            P ++RR  KGSAR GCPFEV VR HAKTH WP I+NMKL+HN  V R AI+V+ RLA + TEEQ  QV + T  GMKPK +T+A +ALHE+  I+INK A +N AA+VHGA++PRDAADAYEE
Sbjct:   87 PGVLRRNVKGSARTGCPFEVSVR-HAKTHRWPKISNMKLKHNHSVDRNAIDVQLRLASKLTEEQLGQVNQMTSHGMKPKEVTKAMKALHEDGDIDINKRAVQNAAATVHGAEKPRDAADAYEE 208          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5KZF1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF1_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.540e-31
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 2
Query:   77 HAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            HA+TH WP I+NMKLEHN  V+REAI+VK RLAG+ TEE+R QVE+    GMKPKA+TEA +ALHE+S ++INK A +N AASVHGA++P DAADAYEE
Sbjct:  146 HARTHQWPKISNMKLEHNHVVNREAIDVKLRLAGKLTEERRGQVEKMISKGMKPKAVTEAMKALHEDSDVDINKRAVQNAAASVHGAEKPGDAADAYEE 244          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5JDU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.050e-30
Identity = 66/116 (56.90%), Postives = 85/116 (73.28%), Query Frame = 2
Query:    5 PRIVRRRSKGSARIGCPFEVVVRLHAKTHPWPMITNMKLEHNQ*VSREAIEVKRRLAGQRTEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRD 352
            P ++RR  KGSAR GCPFEV VR HAKTH WP I+NMKL+HN  V R AI+V+ RLA + TEEQ  QV++ T  GMKPK +T+A +ALHE+  I+INK A +N AA+V   ++ R+
Sbjct:  101 PGVLRRNVKGSARTGCPFEVSVR-HAKTHRWPKISNMKLKHNHSVDRNAIDVQVRLASKLTEEQLGQVKQMTSHGMKPKEVTKAMKALHEDGDIDINKRAVQNAAATVRTGRRSRE 215          
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.370e-13
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  185 TEEQREQVERTTGDGMKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE 373
            TEEQ  QV++ T  GMKPK +T+A +ALHE+  I+INK A +N AA+VHGAK+PRDAAD+YEE
Sbjct:  474 TEEQLGQVKQMTSHGMKPKEVTKAMKALHEDGDIDINKRAVQNAAATVHGAKKPRDAADSYEE 536          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15171.3660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JK57_9PHAE6.050e-4268.55MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L586_9PHAE5.410e-4063.41FAR1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAS6_9PHAE1.690e-3966.94MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JNB0_9PHAE2.450e-3866.41SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KUA5_9PHAE2.330e-3763.41MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KZF1_9PHAE1.540e-3167.68MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDU5_9PHAE1.050e-3056.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LMZ3_9PHAE5.370e-1363.49SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15171contigE-fasciculatus_F_contig15171:1331..2125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size373
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15171.3660.1prot_E-fasciculatus_F_contig15171.3660.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15171 1331..1474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.9404776-CDS-E-fasciculatus_F_contig15171:1330..14741622927996.9404776-CDS-E-fasciculatus_F_contig15171:1330..1474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15171 1331..1474 -
1695995782.6854706-CDS-E-fasciculatus_F_contig15171:1330..14741695995782.6854706-CDS-E-fasciculatus_F_contig15171:1330..1474Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15171 1331..1474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.9546304-UTR-E-fasciculatus_F_contig15171:1474..14821622927996.9546304-UTR-E-fasciculatus_F_contig15171:1474..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 1475..1482 -
1695995782.705045-UTR-E-fasciculatus_F_contig15171:1474..14821695995782.705045-UTR-E-fasciculatus_F_contig15171:1474..1482Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 1475..1482 -
1622927996.9735806-UTR-E-fasciculatus_F_contig15171:1626..17861622927996.9735806-UTR-E-fasciculatus_F_contig15171:1626..1786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 1627..1786 -
1695995782.7188082-UTR-E-fasciculatus_F_contig15171:1626..17861695995782.7188082-UTR-E-fasciculatus_F_contig15171:1626..1786Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 1627..1786 -
1622927996.9912426-UTR-E-fasciculatus_F_contig15171:2064..21251622927996.9912426-UTR-E-fasciculatus_F_contig15171:2064..2125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 2065..2125 -
1695995782.7301624-UTR-E-fasciculatus_F_contig15171:2064..21251695995782.7301624-UTR-E-fasciculatus_F_contig15171:2064..2125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15171 2065..2125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15171.3660.1

>prot_E-fasciculatus_F_contig15171.3660.1 ID=prot_E-fasciculatus_F_contig15171.3660.1|Name=mRNA_E-fasciculatus_F_contig15171.3660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
MKPKAMTEATQALHEESGIEINKHAAKNEAASVHGAKQPRDAADAYEE
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mRNA from alignment at E-fasciculatus_F_contig15171:1331..2125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15171.3660.1 ID=mRNA_E-fasciculatus_F_contig15171.3660.1|Name=mRNA_E-fasciculatus_F_contig15171.3660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=795bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15171:1331..2125- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAACCGAGGATAGTACGGCGGCGCAGCAAGGGAAGCGCGAGGATTGGTT GTCCGTTTGAGGTGGGTGCTGCTCTCCCGCGGAACATGTTTTGTTGCAGT GGACAAAGACAGGGATGAGCAGATGGCGGAGGTCTTCGACCGCGAGGTGA ATTGAAAAGGATGGCCGAGCTGCGGATTTGGAAATGAAAGGGGGGGGGGA GGAGGATCGGTCGGGTGTGTTGTGCTCCATGTTTCCATGCTTTGATCCAT GACACACATGTATCCCACGTTCCATATCTTCAGTACTATTGTAACCCTCC TCTCTCCTTCTTCGTGGACCTACCGTTCCGTTGTTTCAGGTTGTCGTACG ACTGCACGCGAAGACCCACCCATGGCCCATGATTACCAACATGAAGCTTG AGCACAACCAATAGGTCAGTCGCGAGGCTATCGAGGTGAAGCGCCGCCTC GCCGGACAACGAACGGAGGAGCAGCGGGAACAAGTGGAGAGGACGACAGG TGAGAAGATCGAACGCGTTGGCGTAGGTCGGTTGTCACGACGTCGAATGA CGAACGGTCTTTAAGCGTCGCGTACGCCTTGCCTGTGGGCGCTCTGTGAC ACACGACTCTAACTGTTGCTCCGGGTCCTCCCATATGACGCAGGTGACGG GATGAAGCCCAAAGCTATGACTGAAGCAACGCAGGCGTTGCACGAGGAGA GCGGCATCGAGATCAACAAGCACGCAGCGAAGAACGAGGCTGCCAGCGTG CATGGGGCCAAGCAGCCGAGAGATGCTGCCGATGCGTACGAAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15171:1331..2125-

>mRNA_E-fasciculatus_F_contig15171.3660.1 ID=mRNA_E-fasciculatus_F_contig15171.3660.1|Name=mRNA_E-fasciculatus_F_contig15171.3660.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15171:1331..2125- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGCCCAAAGCTATGACTGAAGCAACGCAGGCGTTGCACGAGGAGAG
CGGCATCGAGATCAACAAGCACGCAGCGAAGAACGAGGCTGCCAGCGTGC
ATGGGGCCAAGCAGCCGAGAGATGCTGCCGATGCGTACGAAGAGATGAAG
CCCAAAGCTATGACTGAAGCAACGCAGGCGTTGCACGAGGAGAGCGGCAT
CGAGATCAACAAGCACGCAGCGAAGAACGAGGCTGCCAGCGTGCATGGGG
CCAAGCAGCCGAGAGATGCTGCCGATGCGTACGAAGAG
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