mRNA_E-fasciculatus_F_contig15163.3657.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: D8LLR0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR0_ECTSI) HSP 1 Score: 408 bits (1048), Expect = 3.010e-140 Identity = 247/278 (88.85%), Postives = 257/278 (92.45%), Query Frame = 1
Query: 1 VRDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTAEPETGGDGAVRVDATKERLRRAITRRRKALVYLAAAGAIPEPSGRLAXXXXXXXXXXXXXXXXXXXXXXXEAAPSDDSLPSRQQTPAGHLAPHSHTPLPPAPPASFSEPYDGGLFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHPVDCLGAIVLDEDN 834
V+DEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTA+PE GD AVRVDATKERLR+AITRRR+ALVYLAA+GA PEPSGR XXXXXXXXXXXXXXXXXXXXX APS+DSLP RQ TP G LAP SHTPL P+PP +EP+DGGLFCSELVAALYQRLGLLDA FPARHDYVPADFAQSLGHPVDCLGA+ LDEDN
Sbjct: 66 VKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTAKPEMDGDAAVRVDATKERLRQAITRRRRALVYLAASGAAPEPSGR---PXXXXXXXXXXXXXXXXXXXXXXXAPSNDSLPLRQ-TPIGPLAPASHTPLSPSPPPPSAEPFDGGLFCSELVAALYQRLGLLDAGFPARHDYVPADFAQSLGHPVDCLGAVDLDEDN 339
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: A0A6H5L9T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9T0_9PHAE) HSP 1 Score: 364 bits (935), Expect = 3.300e-118 Identity = 231/281 (82.21%), Postives = 238/281 (84.70%), Query Frame = 1
Query: 1 VRDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTAEPETGGDGAVRVDATKERLRRAITRRRKALVYLAAAGAIPEPSGRLAXXXXXXXXXXXXXXXXXXXXXXXEAA----PSDDSLPSRQQTPAGHLAPHSHTPLPPAPPASFSEPYDGGLFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHPVDCLGAIVLDED 831
V+DEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELEL A+PETGGD AVRVDATKERLRRAITR XXXXXXXXXXXXXXXXXXXXXXX PSDDSLPSRQ P G +APHSHTPL P+ +EP+DGGLFCSELVAALYQRLGLLDA FPARHDYVPADFAQSLGHPVDCLGA+ LDED
Sbjct: 52 VKDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELIAKPETGGDAAVRVDATKERLRRAITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSDDSLPSRQ-APIGPVAPHSHTPLSPSXXXXXAEPFDGGLFCSELVAALYQRLGLLDAGFPARHDYVPADFAQSLGHPVDCLGAVDLDED 331
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: A0A7J7IKN1_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKN1_9RHOD) HSP 1 Score: 69.3 bits (168), Expect = 1.700e-9 Identity = 81/269 (30.11%), Postives = 106/269 (39.41%), Query Frame = 1
Query: 1 VRDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAK-EQRRRVHAETVALSASIASLEKELE---LTAEPETGGDGAVRVDATKERLRRAITRRRKALVYLAAAGAIPEPSGRLAXXXXXXXXXXXXXXXXXXXXXXXEAAPSDDSLPSRQQTPAGHLAPHSHTPLPPAPPASFSEPYDGGLFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHP 795
VR E G ++EA+ SGV +RPL ER+RRS +++I RRL RT+ R E F +V PYK +L V HPA ++R R+HA V+ A +E+EL LTA R+ E + RR A AA G E S L+ +FCSELVAA YQRLGLL ++FP YVP DF+ +P
Sbjct: 131 VRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIVRTDRFRRELEHFAEQVLETPYKNDFGAMLVSV-----IHPADMQERERLHALLVSRHAQRMEVERELREAALTAFQRNSLMEQRRLLLQSEEKIEEVLRRELA----AAKGGYFEGSNDLSR-----------------------------------------------------------------VFCSELVAAAYQRLGLL-SSFPPADSYVPKDFSTEQTNP 324
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: M1VD17_CYAM1 (Similar to mitochondrial calcium-dependent solute carrier n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VD17_CYAM1) HSP 1 Score: 69.3 bits (168), Expect = 1.750e-9 Identity = 81/269 (30.11%), Postives = 105/269 (39.03%), Query Frame = 1
Query: 1 VRDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAK-EQRRRVHAETVALSASIASLEKELE---LTAEPETGGDGAVRVDATKERLRRAITRRRKALVYLAAAGAIPEPSGRLAXXXXXXXXXXXXXXXXXXXXXXXEAAPSDDSLPSRQQTPAGHLAPHSHTPLPPAPPASFSEPYDGGLFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHP 795
VR E G ++EA+ SGV +RPL ER+RRS +++I RRL RTE R E F +V PYK +L V HPA ++R R+HA V+ A +E+EL LTA R+ E + RR A A G E S L+ +FCSELVAA YQRLGLL ++FP YVP DF+ +P
Sbjct: 133 VRKEDGSLHLLEANLSGVTLRPLDERIRRSRSNEIAFRRLSIIRTERFRTELLHFAEQVLETPYKNDLGAMLVSV-----IHPADMQERERLHALLVSRRAQRMEVERELREAALTAFQRNSLLEQRRILLQSEEKIEEVLRRELA----ATKGGFFEGSNDLSR-----------------------------------------------------------------VFCSELVAAAYQRLGLL-SSFPPADSYVPKDFSTEQANP 326
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: M2Y5W0_GALSU (Mitochondrial carrier n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y5W0_GALSU) HSP 1 Score: 60.1 bits (144), Expect = 1.930e-6 Identity = 77/284 (27.11%), Postives = 107/284 (37.68%), Query Frame = 1
Query: 1 VRDEKGLNVMVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVSHLPYKEGSEGLLQMVSAAFRFHPAKEQRRRVHAETVALSASIASLEKELELTAEPETGGDGAVRVDATKERLRRAITRRRKALVYLAAAGAIPEPSGRLAXXXXXXXXXXXXXXXXXXXXXXXEAAPSDDSLPSRQQTPAGHLAPHSHTPLPPAPPASFSEPYDGG-----LFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHPVDCL---GAIVLDE 828
VR E G ++EA+ SGV +RPL ER++RS + +I +RRL RTE R + FV+ +LPY+ + LL + K++R R+HA + + ++ EL KE A RR AG + RL Q G P++G +FCSELVAA YQ LGLLD +P Y P DF+ +P L GA + DE
Sbjct: 56 VRKEDGNLFLLEANLSGVKLRPLEERLKRSHSHEIAIRRLSIVRTEVFRGKLLDFVNRTINLPYETSTSSLLSTIIDPVD----KQERERLHALLLEKKTQLNEIDLEL-------------------KEGALTAFQRRSLQAERARVAGNLEALEARL------------------------------------NQVMKG------------------KSPFEGKEDLNRVFCSELVAAAYQHLGLLDK-YPPAGGYAPKDFSSEQVNPAALLLLKGAHLSDE 261
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Match: A0A4D9CVQ8_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVQ8_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 6.490e-5 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 661 EPYDGGLFCSELVAALYQRLGLLDAAFPARHDYVPADFAQSLGHPVDCLG 810
E GLFCSELVAA YQRLGLL +A+PA + Y+P DFA + PV LG
Sbjct: 229 EDMGSGLFCSELVAAAYQRLGLL-SAYPASNTYIPTDFASA--KPVSVLG 275 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15163.3657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15163.3657.1 >prot_E-fasciculatus_F_contig15163.3657.1 ID=prot_E-fasciculatus_F_contig15163.3657.1|Name=mRNA_E-fasciculatus_F_contig15163.3657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=280bp MVEASFSGVAVRPLCERVRRSSASQICVRRLQAHRTEEMREEARRFVSEVback to top mRNA from alignment at E-fasciculatus_F_contig15163:403..2855+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15163.3657.1 ID=mRNA_E-fasciculatus_F_contig15163.3657.1|Name=mRNA_E-fasciculatus_F_contig15163.3657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2453bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15163:403..2855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15163:403..2855+ >mRNA_E-fasciculatus_F_contig15163.3657.1 ID=mRNA_E-fasciculatus_F_contig15163.3657.1|Name=mRNA_E-fasciculatus_F_contig15163.3657.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1680bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15163:403..2855+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |