mRNA_E-fasciculatus_F_contig15158.3653.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15158.3653.1
Unique NamemRNA_E-fasciculatus_F_contig15158.3653.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15158.3653.1 vs. uniprot
Match: A0A6H5JEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG7_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 2.970e-71
Identity = 140/187 (74.87%), Postives = 144/187 (77.01%), Query Frame = 1 
Query:    1 MGAGGYGGQGRSGXXXXXXXGMQGHYLRESDFPLEMGGAASRAEKSPQLRPRGGTGPDTINNQDKGDPPPSASPSGGPREGQQTXXXXXXXXXXXXXXXXNSPSXXXXXXSYAMAPSSGPRDHDGMPSPLGGGRYGDGGDHYGHHGPPSVPSRLSGRGGGGSSFGSRLAGYGGTANESARGEYTRGG 561
            MGAGGYGGQGR G       GMQGHYLRESDFPLEMGG ASRAEK+PQLRPRGGTGPDT   Q KGDPPP ASPSGG REGQQT                 SPS      S+AMAPSSGPRD DGMPSPLGGGRYGDGGDH+GHHGPPSVPSRLSGRG   S FGSRLAGYGGTANESARG+YTRGG
Sbjct:  245 MGAGGYGGQGRLGGGPPGGGGMQGHYLRESDFPLEMGGGASRAEKAPQLRPRGGTGPDTS--QGKGDPPPFASPSGGSREGQQTRAAAAVGRAGGNGNNSPSPS------SHAMAPSSGPRDLDGMPSPLGGGRYGDGGDHFGHHGPPSVPSRLSGRGA--SPFGSRLAGYGGTANESARGDYTRGG 421
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15158.3653.1 vs. uniprot
Match: D8LL01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL01_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 2.170e-62
Identity = 155/189 (82.01%), Postives = 157/189 (83.07%), Query Frame = 1 
Query:    1 MGAGGYGGQGRSGXXXXXXXGMQGHYLRESDFPLEMGGAASRAEKSPQLRPRGGTGPDTINNQDKGDPPPSASPSGGPREGQQTXXXXXXXXXXXXXXXX--NSPSXXXXXXSYAMAPSSGPRDHDGMPSPLGGGRYGDGGDHYGHHGPPSVPSRLSGRGGGGSSFGSRLAGYGGTANESARGEYTRGG 561
            MGAGGY GQGRS XXXXXXXGMQGHYLRESDFPLEMGG ASRAEKSPQLRPRGGTGPDT   Q KGDPP               XXXXXXXXXXXXXXXX  NSPS      S+AMAPSSGPRDHDGMPSPLGGGRYGDGGDHYGHHGPPSVPSRLSGRGG  SSFGSRLAGYGGTANESARG+YTRGG
Sbjct:  245 MGAGGYVGQGRSXXXXXXXXGMQGHYLRESDFPLEMGGGASRAEKSPQLRPRGGTGPDTS--QGKGDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPSPS----SFAMAPSSGPRDHDGMPSPLGGGRYGDGGDHYGHHGPPSVPSRLSGRGG--SSFGSRLAGYGGTANESARGDYTRGG 425
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15158.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEG7_9PHAE2.970e-7174.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL01_ECTSI2.170e-6282.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15158contigE-fasciculatus_F_contig15158:1316..2940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size617
Cds size615
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927996.042823-CDS-E-fasciculatus_F_contig15158:1315..17731622927996.042823-CDS-E-fasciculatus_F_contig15158:1315..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15158 1316..1773 -
1695995782.238727-CDS-E-fasciculatus_F_contig15158:1315..17731695995782.238727-CDS-E-fasciculatus_F_contig15158:1315..1773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15158 1316..1773 -
1622927996.0700674-CDS-E-fasciculatus_F_contig15158:2783..29401622927996.0700674-CDS-E-fasciculatus_F_contig15158:2783..2940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15158 2784..2940 -
1695995782.2505503-CDS-E-fasciculatus_F_contig15158:2783..29401695995782.2505503-CDS-E-fasciculatus_F_contig15158:2783..2940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15158 2784..2940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15158.3653.1prot_E-fasciculatus_F_contig15158.3653.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15158 1316..2940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15158.3653.1

>prot_E-fasciculatus_F_contig15158.3653.1 ID=prot_E-fasciculatus_F_contig15158.3653.1|Name=mRNA_E-fasciculatus_F_contig15158.3653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=205bp
MGAGGYGGQGRSGGGPPGGGGMQGHYLRESDFPLEMGGAASRAEKSPQLR
PRGGTGPDTINNQDKGDPPPSASPSGGPREGQQTRSAAAAAGGRAGGGGN
NSPSPSPSPSSYAMAPSSGPRDHDGMPSPLGGGRYGDGGDHYGHHGPPSV
PSRLSGRGGGGSSFGSRLAGYGGTANESARGEYTRGGGGGYGHNHNGDFR
SGGGG
back to top

mRNA from alignment at E-fasciculatus_F_contig15158:1316..2940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15158.3653.1 ID=mRNA_E-fasciculatus_F_contig15158.3653.1|Name=mRNA_E-fasciculatus_F_contig15158.3653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1625bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15158:1316..2940- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGCGGGGGGGTACGGGGGTCAAGGTAGGTCTGGCGGCGGGCCCCC
TGGGGGAGGCGGGATGCAGGGCCACTACCTGAGGGAGAGCGACTTCCCCC
TGGAGATGGGCGGCGCCGCTTCGAGGGCAGAGAAATCGCCGCAGCTGAGG
CCGAGAGGTGAGGTGGTGACCGGCGTGGTTGGAGGATTCGATTTAAGCTC
CCAGCCGTAACCGTGTTGGGTGAAACGAGTACGGAGGTACCGGAGGTGTA
CGTTGCAAACAGGTGTTGTACGAGGTCTCGGGGTTACGTTTGTGTTACGT
TTGTGTAGGGCCCGTACAGTAGAGTAGAGCACGTAGGGGGGCACATGTCC
CAAACTGCGGTGAGCTGTCTCTTTGAGAGCGGGGAGTAGCAAGCTCGCCA
TGTTTGCTGATCAAACTGTACCCATCATGTATCATGTTCGTAGAGGTGGT
GGTGCTGCTTGTAGGGACTTGCTTGGTGCACACAAGGACGTACGGTTCTA
TCCGTACGTTTCACACCATGGTTGGCGCACTCACAGTTGGCAAGTCGTGG
TTGACCAGTTGCACAAAGTGTCTTTTAAGAAAACGAAGCGACTGACCCAA
TGGGCGACAACCCTAAGTTAAAAAAATGAGTGAGTGTGCGGGGTTGCTCC
TGCTGTTCTTTACCGAACAGCTGTTGGCTACGAGCCTCATTTTGGAACCT
CTCGAAAGGCTTTGTAACCCACCTTGTGACTGCCTGTGTTGTTGTGCAGG
AGTCAGGAGTGCCAGTGGCCAGGGTACACGGTTCACAGTCAGTGAGAACA
AGTACAGTGGTAGCTGCGACTTGCTCCTCTCCTTTATATTCCTGTCCCGA
AGTGTGTGCTAGGCGTTGTTGGATCTTGTTCGGCTGTGTTTGCTACATAA
ATTTGGATGTTGTCTCCTCGTACGGAAGGAAAATATAGATACATTGATGG
GGTGCTGTGATTGGTTTTGCAAGAGATGCCACCCTCCCTCCTCCCTCCCC
CTTTTGTTTCCATGGCGTGACTGGTGCAAGACCAAGACCGGCCTGTTCGC
GCTTGCAAACTCCCCCTCTCTTTCTCTCTCTATCTTTCTGCGACTGTATT
TTACTCCAATACTGATTTCTTCACGACCTTGTTCGAACGATCGTTGAATC
GTCTGTTCTCTCATCAGGCGGAACCGGGCCTGACACTATTAATAACCAAG
ACAAAGGAGACCCGCCCCCGTCCGCTTCCCCTTCAGGCGGGCCGCGGGAG
GGACAGCAAACTCGATCAGCAGCAGCAGCAGCAGGTGGACGGGCAGGAGG
GGGTGGCAATAACTCGCCCTCGCCCTCGCCCTCTCCCTCCTCCTACGCAA
TGGCACCCTCCTCGGGCCCGCGAGATCACGACGGCATGCCTAGCCCCCTC
GGCGGGGGAAGGTACGGCGACGGCGGTGACCACTACGGCCACCACGGCCC
GCCGTCAGTTCCGTCCCGGTTGTCCGGGAGAGGGGGAGGGGGATCTTCCT
TCGGCTCTCGCCTCGCCGGGTACGGCGGTACGGCGAACGAATCGGCTAGG
GGGGAGTACACCCGCGGCGGCGGGGGCGGCTACGGGCACAATCACAACGG
AGACTTCCGGAGCGGGGGAGGGGGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15158:1316..2940-

>mRNA_E-fasciculatus_F_contig15158.3653.1 ID=mRNA_E-fasciculatus_F_contig15158.3653.1|Name=mRNA_E-fasciculatus_F_contig15158.3653.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1230bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15158:1316..2940- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGCGGGGGGGTACGGGGGTCAAGGTAGGTCTGGCGGCGGGCCCCC
TGGGGGAGGCGGGATGCAGGGCCACTACCTGAGGGAGAGCGACTTCCCCC
TGGAGATGGGCGGCGCCGCTTCGAGGGCAGAGAAATCGCCGCAGCTGAGG
CCGAGAGATGGGGGCGGGGGGGTACGGGGGTCAAGGTAGGTCTGGCGGCG
GGCCCCCTGGGGGAGGCGGGATGCAGGGCCACTACCTGAGGGAGAGCGAC
TTCCCCCTGGAGATGGGCGGCGCCGCTTCGAGGGCAGAGAAATCGCCGCA
GCTGAGGCCGAGAGGCGGAACCGGGCCTGACACTATTAATAACCAAGACA
AAGGAGACCCGCCCCCGTCCGCTTCCCCTTCAGGCGGGCCGCGGGAGGGA
CAGCAAACTCGATCAGCAGCAGCAGCAGCAGGTGGACGGGCAGGAGGGGG
TGGCAATAACTCGCCCTCGCCCTCGCCCTCTCCCTCCTCCTACGCAATGG
CACCCTCCTCGGGCCCGCGAGATCACGACGGCATGCCTAGCCCCCTCGGC
GGGGGAAGGTACGGCGACGGCGGTGACCACTACGGCCACCACGGCCCGCC
GTCAGTTCCGTCCCGGTTGTCCGGGAGAGGGGGAGGGGGATCTTCCTTCG
GCTCTCGCCTCGCCGGGTACGGCGGTACGGCGAACGAATCGGCTAGGGGG
GAGTACACCCGCGGCGGCGGGGGCGGCTACGGGCACAATCACAACGGAGA
CTTCCGGAGCGGGGGAGGGGGTGCGGAACCGGGCCTGACACTATTAATAA
CCAAGACAAAGGAGACCCGCCCCCGTCCGCTTCCCCTTCAGGCGGGCCGC
GGGAGGGACAGCAAACTCGATCAGCAGCAGCAGCAGCAGGTGGACGGGCA
GGAGGGGGTGGCAATAACTCGCCCTCGCCCTCGCCCTCTCCCTCCTCCTA
CGCAATGGCACCCTCCTCGGGCCCGCGAGATCACGACGGCATGCCTAGCC
CCCTCGGCGGGGGAAGGTACGGCGACGGCGGTGACCACTACGGCCACCAC
GGCCCGCCGTCAGTTCCGTCCCGGTTGTCCGGGAGAGGGGGAGGGGGATC
TTCCTTCGGCTCTCGCCTCGCCGGGTACGGCGGTACGGCGAACGAATCGG
CTAGGGGGGAGTACACCCGCGGCGGCGGGGGCGGCTACGGGCACAATCAC
AACGGAGACTTCCGGAGCGGGGGAGGGGGT
back to top