mRNA_E-fasciculatus_F_contig15156.3652.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15156.3652.1
Unique NamemRNA_E-fasciculatus_F_contig15156.3652.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.710e-125
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR
Sbjct:   79 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 249
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 7.040e-122
Identity = 170/180 (94.44%), Postives = 170/180 (94.44%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ---------AYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ         AYRWIDDSRDDYTKERLE LDDAFKLFR
Sbjct:   34 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQGGVEVGAVEAYRWIDDSRDDYTKERLELLDDAFKLFR 213
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.950e-105
Identity = 141/171 (82.46%), Postives = 159/171 (92.98%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNI+G+NTLACLC I+ +S+ +K+ PLPHM+V KDLVPDMTNFY+QYKSIEPWLKTK  K  D EHLQS++DRKKLDGMYECI+CACCST+CPSYWWN DKYLGPAVLMQAYRWI+DSRD+YT+ERLE LDDAFKL+R
Sbjct:   62 PMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGRNTLACLCYIDRNSSSIKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSVEDRKKLDGMYECIMCACCSTACPSYWWNGDKYLGPAVLMQAYRWIEDSRDEYTRERLEQLDDAFKLYR 232
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA)

HSP 1 Score: 308 bits (790), Expect = 2.420e-104
Identity = 143/171 (83.63%), Postives = 156/171 (91.23%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNING+NTLACL  I++ S+  K+ PLPHM+V KDLVPDMTNFY+QYKSIEPWLKTK  K  D EHLQSI DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+R
Sbjct:   64 PMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGRNTLACLAYIDKSSSSTKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSIADRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIEDSRDEFTRERLEQLDDAFKLYR 234
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA)

HSP 1 Score: 303 bits (775), Expect = 7.960e-102
Identity = 143/173 (82.66%), Postives = 157/173 (90.75%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTK--KDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDAL KIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACL  I +   P KIYPLPHM+V KDLVPDMTNFY+QYKSIEPWL+TK  + KDP+ EHLQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD+YTKERLE+LDD+FKL+R
Sbjct:   78 PMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYR 250
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A7R9W5S4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5S4_9STRA)

HSP 1 Score: 299 bits (765), Expect = 1.140e-100
Identity = 145/178 (81.46%), Postives = 155/178 (87.08%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSA------PMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC IE   +        KIYPLPHM+V KDLVPDM NFYEQY+SIEPWLK KK K+P   E+LQS +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDD+TKERLE LDDAFKL+R
Sbjct:   51 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIEPKGSGDTSGKATKIYPLPHMYVVKDLVPDMGNFYEQYRSIEPWLKKKKGKEPGQAEYLQSREDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTKERLEDLDDAFKLYR 228
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A7S0LTD8_9EUKA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTD8_9EUKA)

HSP 1 Score: 301 bits (771), Expect = 1.340e-100
Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQD TLTFRRSCREGICGSCAMNING NTLACLC I +DS PM IYPLPHM + KDLVPD++NFYEQYKSI+PWL+T  +KDP+ EHLQS++DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI DSRD  T+ERL +LDD +KL+R
Sbjct:  120 PMVLDALIKIKNEQDQTLTFRRSCREGICGSCAMNINGGNTLACLCNITDDSEPMTIYPLPHMEIVKDLVPDLSNFYEQYKSIQPWLQTDVEKDPNQEHLQSVEDRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIADSRDTKTEERLAALDDQWKLYR 290
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA)

HSP 1 Score: 294 bits (753), Expect = 1.220e-98
Identity = 141/173 (81.50%), Postives = 157/173 (90.75%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPM-KIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I++ SA   KIYPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T K+K+    E LQ+ ++R KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD++TKERLE LDDAFKL+R
Sbjct:   66 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIDDKSAAATKIYPLPHMYVVKDLVPDMSNFYEQYRSIEPWLQTTKEKEEGQKEWLQTRENRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDEFTKERLEELDDAFKLYR 238
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A7S2LAL1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAL1_9STRA)

HSP 1 Score: 293 bits (749), Expect = 6.690e-98
Identity = 141/173 (81.50%), Postives = 154/173 (89.02%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIE-EDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I  E S+  KIYPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T + K+P   E LQ+ +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDDY K+RL  LDDAFKL+R
Sbjct:   73 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGSNTLACLCYINNESSSATKIYPLPHMYVIKDLVPDMSNFYEQYRSIEPWLQTVQSKEPGQKEWLQTKEDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDYGKKRLAELDDAFKLYR 245
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Match: A0A482S9J5_9ARCH (Succinate dehydrogenase iron-sulfur subunit n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9J5_9ARCH)

HSP 1 Score: 289 bits (740), Expect = 4.080e-97
Identity = 137/172 (79.65%), Postives = 154/172 (89.53%), Query Frame = 1 
Query:    1 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDV-EHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFR 513
            PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC IE+++    I PLPHM+V KDLV D++NFY+QYKSI+PWL+TK   D +  EHLQS +DRKKLDGMYECILCACCST+CPSYWWNADKYLGPAVLMQAYRWI+DSRD+ TKERLE LDD+FKL+R
Sbjct:   37 PMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIEKNAESTAINPLPHMYVVKDLVTDLSNFYDQYKSIKPWLQTKASHDLNKGEHLQSKEDRKKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDELTKERLEELDDSFKLYR 208
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15156.3652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF5_ECTSI2.710e-125100.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5JQA7_9PHAE7.040e-12294.44Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A836C854_9STRA1.950e-10582.46Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A835Z536_9STRA2.420e-10483.63Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
W7U0Z2_9STRA7.960e-10282.66Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7R9W5S4_9STRA1.140e-10081.46Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0LTD8_9EUKA1.340e-10081.87Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0PK69_9STRA1.220e-9881.50Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S2LAL1_9STRA6.690e-9881.50Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A482S9J5_9ARCH4.080e-9779.65Succinate dehydrogenase iron-sulfur subunit n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15156contigE-fasciculatus_F_contig15156:2..3085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.7
Seed ortholog evalue1.9e-97
Seed eggNOG ortholog2880.D7FWF5
Preferred nameSDHB
KEGG rclassRC00045
KEGG koko:K00235
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0005886,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0048037,GO:0048038,GO:0048039,GO:0051536,GO:0051537,GO:0051538,GO:0051539,GO:0051540,GO:0055086,GO:0055114,GO:0070013,GO:0070469,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.3 iron, 4 sulfur cluster binding
EggNOG OGsCOG0479@1,KOG3049@2759
EC1.3.5.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSDH2, succinate dehydrogenase subunit 2
Ec32 orthologEc-07_007310.1
Exons5
Model size513
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15156.3652.1prot_E-fasciculatus_F_contig15156.3652.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15156 5..3085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.8971572-UTR-E-fasciculatus_F_contig15156:1..41622927995.8971572-UTR-E-fasciculatus_F_contig15156:1..4Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15156 2..4 +
1695995782.1782556-UTR-E-fasciculatus_F_contig15156:1..41695995782.1782556-UTR-E-fasciculatus_F_contig15156:1..4Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15156 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.9147065-CDS-E-fasciculatus_F_contig15156:4..431622927995.9147065-CDS-E-fasciculatus_F_contig15156:4..43Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 5..43 +
1695995782.19076-CDS-E-fasciculatus_F_contig15156:4..431695995782.19076-CDS-E-fasciculatus_F_contig15156:4..43Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 5..43 +
1622927995.931357-CDS-E-fasciculatus_F_contig15156:820..9281622927995.931357-CDS-E-fasciculatus_F_contig15156:820..928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 821..928 +
1695995782.198989-CDS-E-fasciculatus_F_contig15156:820..9281695995782.198989-CDS-E-fasciculatus_F_contig15156:820..928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 821..928 +
1622927995.9519787-CDS-E-fasciculatus_F_contig15156:1374..15271622927995.9519787-CDS-E-fasciculatus_F_contig15156:1374..1527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 1375..1527 +
1695995782.2075684-CDS-E-fasciculatus_F_contig15156:1374..15271695995782.2075684-CDS-E-fasciculatus_F_contig15156:1374..1527Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 1375..1527 +
1622927995.9678702-CDS-E-fasciculatus_F_contig15156:2268..23941622927995.9678702-CDS-E-fasciculatus_F_contig15156:2268..2394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 2269..2394 +
1695995782.216224-CDS-E-fasciculatus_F_contig15156:2268..23941695995782.216224-CDS-E-fasciculatus_F_contig15156:2268..2394Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 2269..2394 +
1622927995.9809499-CDS-E-fasciculatus_F_contig15156:3001..30851622927995.9809499-CDS-E-fasciculatus_F_contig15156:3001..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 3002..3085 +
1695995782.22851-CDS-E-fasciculatus_F_contig15156:3001..30851695995782.22851-CDS-E-fasciculatus_F_contig15156:3001..3085Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15156 3002..3085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15156.3652.1

>prot_E-fasciculatus_F_contig15156.3652.1 ID=prot_E-fasciculatus_F_contig15156.3652.1|Name=mRNA_E-fasciculatus_F_contig15156.3652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
MVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEED
SAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQ
SIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDS
RDDYTKERLESLDDAFKLFR
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mRNA from alignment at E-fasciculatus_F_contig15156:2..3085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15156.3652.1 ID=mRNA_E-fasciculatus_F_contig15156.3652.1|Name=mRNA_E-fasciculatus_F_contig15156.3652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3084bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15156:2..3085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCATGGTTCTGGACGCACTGATCAAGATCAAGAACGAACAGGTGAGTTC
ACCTTCTCCGCTTGCTACATACAAGTATATTTGTTCCCCCTCTGGGCGCT
GGCGACGACATCCAAAGCTTGAGGGCCTAGGTAGTGTGTGCGTTGTGTGT
GTTTGTCTGTGTGAATGCCACCGCCGCAACGTAGTCTCGGAGTTCCGCTA
ATTTTTTTTTGCCCTGCGCTCCTTCGCATGAGGACTGCCGGTAAGCCGTC
CAATTTGGGCGTAGACCCCACGAATTGTGTTGTGCTATTCTCCTCCCCGC
CCCACACCGCTGGTTCTATGCTGTGGTGACCTGACGCGGCGCTGCTTTAT
CGCGGAAGTGCATTTTTCTGCGTTGTCAAGTGCTCCGAGGGCCAAAAACT
GCCGTGGGTGGGGTACGTCTCGCTCTGGAGTGTCTCGTAATCGCGCCCTC
CCTGCCTTGCCCGTGTCTCTGACGGCGGGAGCAGCATGTTTCGGTCTTTG
TTCTTGTCCTGGCACCAATGACAGCCATGCCTGTCCTTGCCCGATTCCCG
TCGCCCCCTTGTGTTTTGGTGCATACATATCTTGAGAGGGTGGAACCTCC
TCCCGCTTTACCCTTGCCCAAAGACACGAAACATGATACGCTTACAATCC
TGCCGGACACAAGACGGGATAACCCCTTCGTTAGACAAGAAGTATGCCGG
GCGGATGACAAAGACAGGGGGTACGATAACAAGCGGTCGTTGGTTGCTGC
CCTGCTCTCCCTGCTTTTCGTTTCGCCCTTGGCTTGTTCCTCTCTTGTTG
TGCGTATTGTACCACGCAGGACCCTACCCTGACGTTCAGGCGATCATGCC
GCGAGGGAATCTGCGGCTCTTGCGCCATGAACATCAACGGGAAGAACACT
CTGGCCTGCCTCTGCGCCATCGAAGAGGTTCGCACGAATGGCCTTCGTCT
GTGGGACAGAAGCAAAAGAACCCGCGTCTGAAACCGTCAACCTTTAAGCA
CCCACGGCCTTCTCACGGTGTACCGGAGAGAGAGAGGCACAAGTAGACCT
GCCGCACTGATTCGCTGTTGCTCTTGGCTCGTGCGTGTGCAGTTGGCACG
AAGCAGCGATGTGTCACCTTCTACTCCATCTCTGCCGTTCGGCTGGTCAC
GTGATTCGAATTCATTTTTCTGGCCCTCGTTTTCTGTTTCCTTCCTTCCC
CGCCCGCCGCTCGCTCGACTTCACCTCCCTCGACAACCCCGGACCTCTCA
CGCATCCATGTCTCCCTGATTCCACGTCATGAACCTAACCAAATCCCCGT
CCCCCTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTTGCTA
TGCATACCTGCATCGATGCGCAGGACTCGGCTCCCATGAAGATCTACCCG
CTGCCGCACATGTTCGTCCAGAAGGACCTCGTGCCAGACATGACCAACTT
CTACGAGCAGTACAAGAGCATCGAGCCGTGGCTCAAGACGAAGAAAGACA
AAGACCCGGACGTTGAACACCTACAGGTGTGGAGTCGTGTCGCGGAGTCG
CGCGGGCAGGCAGCCGTTTTTTGGCGTCGAGAAAAGATGGGATGTGTTGT
GGTCGCTTGGTTCGAGAGTTGAGACGGCTTTCTCGGGGGTCGGCCCACGT
CGTATAGTAGCTGGGAATTGCAGAAGAAATCTCTGGCTTCCCAGGAAGTC
CTGAGAATAAAACTGGCACAGTTCGAGGACCACATAAAAGACAAACAACT
CTCCGGTGTGGTCTGTCTTCCTCCCCTTCCTCCTGCGTGATTGCGGCTGA
TGCGTCCACAGATACCGAAAGGCTTAAACCACTGACACCCGGAATGAAAT
GGGAGAGACGCAACAGATGGTCAGGGTCGAAAGCTCGAGATTAGTATTCT
AGCGCCTTCCGAGTTTCGTAATTCGCGTTTTCCTTGCACCAGTTTACGAC
AATAACCCCGAGCCGGTAGCTGGTTCCTTTCACGGACGGGACCTCCAAGC
ACAGCACGGACGTGTAGGACGAACATTTGTTGCACTCGGATGCCTGGAGA
CTTTGGCGTTCCCACAACGACAAATGCGTTGAACTCGAGGAGGCTCTCTG
GTTGTATCGCGGCAGAGACAAAATACCGTGTTTAGGTACACCATCCTCGT
ACTCTGGTGCAACTTGAGTCATGTGCCGGTGACCCGACGGCAGCGGGCTT
ACGGTATCGCTTGCAACAGTGTAACCTCCGCGGGCATGACGTTTTTTCGA
AAACTCCCCGTTGGCAGTCCATCCAAGATCGCAAGAAGCTGGACGGCATG
TACGAGTGCATCCTGTGCGCCTGCTGCAGCACCTCGTGCCCGTCGTACTG
GTGGAACGCCGACAAGTACCTTGGTCCCGCAGTCCTCATGCAGGTGAAGA
GCGAGATTGTTGGGGAAGCTACTAGTTGGATGTGCAACGGGGCCTGCAAG
CAGTCATGTATGGTGTCAGCCAGTGTTGACTGCATGGCATAGGTAGGGGG
CGGTGGAAATATACTGGCATGTAAACAGGTCATGTTTGTTACCAACCAGT
GTTGACTGCATTGTTGGAGACACTTCTCCGACGTTGTTGTGGTGGTTGTT
GCTGCTTTTTCGTAACAGAGTGGCGGTCTGCTAGCCGCACCCCCTTCCCC
GGGACCTCCGCATAATCGCCGGCGTCTTACCTGTGCTGGGTGTTGCACGA
GACCACTAACTCTTGTTGCACGAGACCATTAACTCTTCCTCCCCAAGGAT
ATGGCGGAGTGGAGAGAGAAAGTGCTAATGATGGGGCTCGGGGTGGGGGT
TTAGCGCCCCTTCGTGTATTTCTCGAAAGTAGTGTTGAGGAGGCACGTAC
GGACAGGACCGGCAGAAATCAAGGCATACAGTGGACATCCTATTTGCACG
CGGTTTGGTACACCATTCGAGCCCCATGCGTTTGCCTCTGTCTATGAATC
TATCAGACGCATTGATGCCTATTTTTCGCCCCCTTGTGGCCGTGTGGCAG
GCATATCGCTGGATCGACGACTCGCGAGACGACTACACCAAGGAGCGCTT
GGAGTCTCTCGATGACGCCTTCAAGCTATTCCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15156:2..3085+

>mRNA_E-fasciculatus_F_contig15156.3652.1 ID=mRNA_E-fasciculatus_F_contig15156.3652.1|Name=mRNA_E-fasciculatus_F_contig15156.3652.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15156:2..3085+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTTCTGGACGCACTGATCAAGATCAAGAACGAACAGATGGTTCTGGA
CGCACTGATCAAGATCAAGAACGAACAGGACCCTACCCTGACGTTCAGGC
GATCATGCCGCGAGGGAATCTGCGGCTCTTGCGCCATGAACATCAACGGG
AAGAACACTCTGGCCTGCCTCTGCGCCATCGAAGAGGACCCTACCCTGAC
GTTCAGGCGATCATGCCGCGAGGGAATCTGCGGCTCTTGCGCCATGAACA
TCAACGGGAAGAACACTCTGGCCTGCCTCTGCGCCATCGAAGAGGACTCG
GCTCCCATGAAGATCTACCCGCTGCCGCACATGTTCGTCCAGAAGGACCT
CGTGCCAGACATGACCAACTTCTACGAGCAGTACAAGAGCATCGAGCCGT
GGCTCAAGACGAAGAAAGACAAAGACCCGGACGTTGAACACCTACAGGAC
TCGGCTCCCATGAAGATCTACCCGCTGCCGCACATGTTCGTCCAGAAGGA
CCTCGTGCCAGACATGACCAACTTCTACGAGCAGTACAAGAGCATCGAGC
CGTGGCTCAAGACGAAGAAAGACAAAGACCCGGACGTTGAACACCTACAG
TCCATCCAAGATCGCAAGAAGCTGGACGGCATGTACGAGTGCATCCTGTG
CGCCTGCTGCAGCACCTCGTGCCCGTCGTACTGGTGGAACGCCGACAAGT
ACCTTGGTCCCGCAGTCCTCATGCAGTCCATCCAAGATCGCAAGAAGCTG
GACGGCATGTACGAGTGCATCCTGTGCGCCTGCTGCAGCACCTCGTGCCC
GTCGTACTGGTGGAACGCCGACAAGTACCTTGGTCCCGCAGTCCTCATGC
AGGCATATCGCTGGATCGACGACTCGCGAGACGACTACACCAAGGAGCGC
TTGGAGTCTCTCGATGACGCCTTCAAGCTATTCCGGGCATATCGCTGGAT
CGACGACTCGCGAGACGACTACACCAAGGAGCGCTTGGAGTCTCTCGATG
ACGCCTTCAAGCTATTCCGG
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