mRNA_E-fasciculatus_F_contig15148.3648.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15148.3648.1
Unique NamemRNA_E-fasciculatus_F_contig15148.3648.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15148.3648.1 vs. uniprot
Match: A0A6H5K070_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K070_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 8.410e-111
Identity = 220/345 (63.77%), Postives = 232/345 (67.25%), Query Frame = 1 
Query:    1 QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRSSVSRNNRRAVASNSPSRRS--AEAATAGTNARRGVSAEEGRRGAFGDESPIERPRSVERGSIRQQRQRRWRXRRLYSNDGIGSEXXXXXXXXXXEGEXXXXXECEXXXXXXXXXXXDSQAQEEGVAEGVSYGLHPGRRWTSERGEGNGGHAXXXXXXXXXXXXXXXXXXXXXX-DGGGSLGTRKSREANRLRCTRGYQQHLEGRLELTQRHLRELERLESSYHETLRRDRQEREMHAQVQKDNAARVVESLGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCGEEREK 1026
            QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRS V +NNRRAVASNSPSRRS  A AATAG NA RG                 +RPR                 RR Y NDGIGS+          EGE                   ++   EE    GVSYGL+PGRRWTSER  GNGGHA                       DGGGSLGTRKSREANRL CTRGYQQHLE RLEL +RHLRELERLE SYHETL RD+QERE+HA+VQ+DNAARVVE+L RR AEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQC E REK
Sbjct:   61 QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRSYVPQNNRRAVASNSPSRRSVAAAAATAGRNAGRGE----------------QRPR-----------------RRRYLNDGIGSDGCSGGEQINMEGER------------------NAGRGEEEATGGVSYGLYPGRRWTSERVGGNGGHADRRRGGREGGVPGSRRRRRPRSGDGGGSLGTRKSREANRL-CTRGYQQHLERRLELNERHLRELERLEGSYHETLTRDKQEREIHARVQRDNAARVVEALERRNAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCREAREK 353
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BLAST of mRNA_E-fasciculatus_F_contig15148.3648.1 vs. uniprot
Match: D8LLH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLH3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 9.950e-57
Identity = 152/343 (44.31%), Postives = 160/343 (46.65%), Query Frame = 1 
Query:    1 QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRSSVSRNNRRAVASNSPSRRS-AEAATAGTNARRGVSAEEGRRGAFGDESPIERPRSVERGSIRQQRQRRWRXRRLYSNDGIGSEXXXXXXXXXXEGEXXXXXECEXXXXXXXXXXXDSQAQEEGVAEGVSYGLHPGRRWTSERGEGNGGHAXXXXXXXXXXXXXXXXXXXXXXDGGGSLGTRKSREANRLRCTRGYQQHLEGRLELTQRHLRELERLESSYHETLRRDRQEREMHAQVQKDNAARVVESLGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCGEEREK 1026
            QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRG+RPLDRSSV +NNRRAV SNSPSRRS A AATAGT+A RG                                                                                                                                                                              RHLRELERLE S+HETL RD+QEREMHA+VQKDNAARV+E+LGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAE QRQCGE REK
Sbjct:   83 QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGSRPLDRSSVPQNNRRAVTSNSPSRRSVAAAATAGTSAGRG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHLRELERLEGSFHETLTRDKQEREMHARVQKDNAARVMEALGRRTAEVEKRLSGATDDYLRLRHKAKEAHAVSAEGQRQCGEAREK 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15148.3648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K070_9PHAE8.410e-11163.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLH3_ECTSI9.950e-5744.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15148contigE-fasciculatus_F_contig15148:287..2874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_004610.1
Exons3
Model size1026
Cds size1026
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15148.3648.1prot_E-fasciculatus_F_contig15148.3648.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15148 287..2874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.2489357-CDS-E-fasciculatus_F_contig15148:286..10511622927995.2489357-CDS-E-fasciculatus_F_contig15148:286..1051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 287..1051 +
1695995781.8973315-CDS-E-fasciculatus_F_contig15148:286..10511695995781.8973315-CDS-E-fasciculatus_F_contig15148:286..1051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 287..1051 +
1622927995.265235-CDS-E-fasciculatus_F_contig15148:1941..20751622927995.265235-CDS-E-fasciculatus_F_contig15148:1941..2075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 1942..2075 +
1695995781.908763-CDS-E-fasciculatus_F_contig15148:1941..20751695995781.908763-CDS-E-fasciculatus_F_contig15148:1941..2075Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 1942..2075 +
1622927995.2793534-CDS-E-fasciculatus_F_contig15148:2747..28741622927995.2793534-CDS-E-fasciculatus_F_contig15148:2747..2874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 2748..2874 +
1695995781.923774-CDS-E-fasciculatus_F_contig15148:2747..28741695995781.923774-CDS-E-fasciculatus_F_contig15148:2747..2874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15148 2748..2874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15148.3648.1

>prot_E-fasciculatus_F_contig15148.3648.1 ID=prot_E-fasciculatus_F_contig15148.3648.1|Name=mRNA_E-fasciculatus_F_contig15148.3648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=342bp
QDRIKIQTLLALSQPITPDITVVFQALAPDACPPPLPPPSRGARPLDRSS
VSRNNRRAVASNSPSRRSAEAATAGTNARRGVSAEEGRRGAFGDESPIER
PRSVERGSIRQQRQRRWRRRRLYSNDGIGSEGGGGGEQTNSEGEQDTDGE
CEEEEGGDDDTGGDSQAQEEGVAEGVSYGLHPGRRWTSERGEGNGGHADG
RGRGRGGGAPRRRRRRPRSRDGGGSLGTRKSREANRLRCTRGYQQHLEGR
LELTQRHLRELERLESSYHETLRRDRQEREMHAQVQKDNAARVVESLGRR
TAEVEKRLSGATDDYLRLRHKAKEAHAVSAEEQRQCGEEREK
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mRNA from alignment at E-fasciculatus_F_contig15148:287..2874+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15148.3648.1 ID=mRNA_E-fasciculatus_F_contig15148.3648.1|Name=mRNA_E-fasciculatus_F_contig15148.3648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15148:287..2874+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACCGGATAAAAATCCAGACTTTACTCGCCCTGTCTCAGCCCATCAC
GCCGGACATCACCGTCGTGTTCCAGGCTCTGGCGCCAGACGCCTGCCCCC
CGCCCCTGCCGCCGCCTTCGAGAGGTGCTCGACCCCTCGATAGGTCGTCC
GTCTCTCGGAACAATCGAAGGGCGGTGGCTTCGAATTCGCCTTCACGCAG
AAGTGCTGAGGCGGCGACAGCCGGGACGAACGCTAGGCGAGGGGTAAGTG
CAGAGGAAGGTAGAAGAGGCGCGTTTGGAGACGAGAGCCCTATCGAACGC
CCAAGAAGTGTTGAACGTGGCAGTATCAGGCAGCAGCGGCAGCGGCGGTG
GCGGCGGCGACGGTTGTACTCAAACGACGGTATTGGAAGCGAGGGCGGCG
GCGGTGGGGAACAAACAAATTCGGAGGGAGAACAGGACACCGACGGAGAG
TGCGAGGAGGAGGAAGGTGGCGACGACGATACCGGTGGTGATAGCCAGGC
ACAGGAAGAGGGGGTAGCAGAAGGAGTGAGCTACGGGTTGCATCCGGGAC
GGCGATGGACCTCGGAGCGAGGGGAGGGAAATGGAGGCCACGCAGACGGG
AGGGGGCGGGGAAGGGGGGGAGGTGCTCCTCGAAGGAGGAGGAGGAGGCC
GAGAAGTCGCGATGGTGGGGGCAGTCTCGGCACTAGAAAAAGCAGGGAGG
CGAACAGGTTGAGGTGTACCCGGGGATATCAACAGCATCTGGAGGGGAGA
TTGGAACTCACCCAGGTGCGTCGGCGGAATACGTTGCCCCCCCGCCGCCC
CCCAGACTATAAGTTCCATAATGAGTGTATGGCAATGAAGATGAATCGCC
CTTGACAGATATTTGGGAATGTATGTAAACAGATTATTTGCAAAGATTTC
TCCACAGTTTTGTGCCACATCGTGGGGTCACCGTCAAACCACCTGGAAGC
CAAAAGCTATACTTGTATTTCACAGAGTCATAAAAGGGAAGAGCGGTCCC
TTGGGCCCTCGTCCGCAAGAGCCTTGATCATGCGAACAGTCTCCACAAGG
TTAGAGGAAGATATGTTGCCATCAGGAGTTTGCTCTCCTTGACATGTGGA
GGTGATCTCAGAGGCGCGACTGCTCTACTGCTGGAACTTGAGAAGTCGCG
GGCGCAATCTGCAAAGGTAGCTCAACTGGAGTGGATTTCAAAAAAGCGAG
ATCGTCCATTCTGTTTTTAAGCGGACCTGATGCGTGCTTTTTGGTCCTGA
AAGCTACGAAGAAGAGGCTTGAAAGCAGCAGGGCTCACAATGGTGATGAC
GTATGCCATTGGTCCACAAACTACCCGCGGATGATACAGAACAGGACGAA
TTTAAAAGCTTCCTGCTGATTTCATGACAGCCGCGGTTTGTCTGAGGTGC
ACCAGCGGTGACGAAAGCCTTGGCCGAATGAATCATGAGCGACAACAGAG
GTGGTATGGTGAAGGAAATGATCCCCCGAAGACGCAACGATGACACCAAC
AAAGCCTTTTTTTTTTTAATTGTGTTCGGCTGAAACAACGCGTAACACAG
ACAGTCTTAGGTCTTCATCCCCGGGGCGGGGTCCAGGGTTAGGTCAACTA
CCTCACACGTCTTTCCTACGCTTCTTTGCACCCTCGATTGCTTCGTGATT
CCCAGCGGCACTTGCGGGAACTGGAGCGCCTCGAAAGTTCGTACCACGAA
ACGCTAAGAAGGGACAGGCAGGAGAGAGAGATGCACGCTCAGGTCCAGAA
GGACAACGCCGCCCGCGTCGTGGAAAGCCTTGGACGGAGGTGAGTCGAAG
CTGTCAAACACAGGAGCGGCATGTACCGTCAGTCTCGGACCGTTCCTTTC
GGCATTGACAGCAAGCCTCTTCGTTGCGGAGCAATCGATGTTTCGCGCAC
TTTTTGACATCGCAACCTTCTCGCTCTCTCGGTTGAGGGTTCGAATGAAT
CCATCCCTCTGGAGTGAAAAATCGCACTAAATTTTTAGAGGTGTCGAGCG
GACTGACTGTTGATCCCTTCTCGCGTTAAAAATTGAAGGCAAAGCGTCGC
AGGGGAACAGGTGGTGAAAAAGAGAAGAAAACTTCTGGTGTTTTAACTTT
CTGCCACCCCGACTAGTGTTAGTTGATACGGTGTGGAAGTAACGAAAGCC
CCAAAAAAACACAGCAACATTGTAGTGACAGTAGTTCCGCGTTTGAGTTT
GTTTTTTCGATCCTTCAGGCAGCGTGTGAAATACTTTTTCGCGTGCATAC
TTGTTGGTATTGATTTTTCTTGTGAGTTTGTGTGTGGTTGTCTTTTCTTA
TTCGCATCGAGCACGTGATAACCCTAGGCTGATAGAATGAAAATACGCCG
TCATCAGTCGCAATGCGGCAGAAAACACAAAGCGCTCCTTAAGGCCACCA
CCTGCTGTGTGCGTGGGTACAATCTTGTTGGTTGTTGATACTGGTACTAT
ATGTACTGCAGGACCGCCGAGGTGGAGAAGCGGTTATCCGGGGCAACCGA
CGACTACCTTCGCCTGAGACACAAGGCCAAAGAAGCACACGCCGTGTCTG
CGGAGGAGCAAAGGCAGTGCGGCGAGGAGCGGGAAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15148:287..2874+

>mRNA_E-fasciculatus_F_contig15148.3648.1 ID=mRNA_E-fasciculatus_F_contig15148.3648.1|Name=mRNA_E-fasciculatus_F_contig15148.3648.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2052bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15148:287..2874+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACCGGATAAAAATCCAGACTTTACTCGCCCTGTCTCAGCCCATCAC
GCCGGACATCACCGTCGTGTTCCAGGCTCTGGCGCCAGACGCCTGCCCCC
CGCCCCTGCCGCCGCCTTCGAGAGGTGCTCGACCCCTCGATAGGTCGTCC
GTCTCTCGGAACAATCGAAGGGCGGTGGCTTCGAATTCGCCTTCACGCAG
AAGTGCTGAGGCGGCGACAGCCGGGACGAACGCTAGGCGAGGGGTAAGTG
CAGAGGAAGGTAGAAGAGGCGCGTTTGGAGACGAGAGCCCTATCGAACGC
CCAAGAAGTGTTGAACGTGGCAGTATCAGGCAGCAGCGGCAGCGGCGGTG
GCGGCGGCGACGGTTGTACTCAAACGACGGTATTGGAAGCGAGGGCGGCG
GCGGTGGGGAACAAACAAATTCGGAGGGAGAACAGGACACCGACGGAGAG
TGCGAGGAGGAGGAAGGTGGCGACGACGATACCGGTGGTGATAGCCAGGC
ACAGGAAGAGGGGGTAGCAGAAGGAGTGAGCTACGGGTTGCATCCGGGAC
GGCGATGGACCTCGGAGCGAGGGGAGGGAAATGGAGGCCACGCAGACGGG
AGGGGGCGGGGAAGGGGGGGAGGTGCTCCTCGAAGGAGGAGGAGGAGGCC
GAGAAGTCGCGATGGTGGGGGCAGTCTCGGCACTAGAAAAAGCAGGGAGG
CGAACAGGTTGAGGTGTACCCGGGGATATCAACAGCATCTGGAGGGGAGA
TTGGAACTCACCCAGCAGGACCGGATAAAAATCCAGACTTTACTCGCCCT
GTCTCAGCCCATCACGCCGGACATCACCGTCGTGTTCCAGGCTCTGGCGC
CAGACGCCTGCCCCCCGCCCCTGCCGCCGCCTTCGAGAGGTGCTCGACCC
CTCGATAGGTCGTCCGTCTCTCGGAACAATCGAAGGGCGGTGGCTTCGAA
TTCGCCTTCACGCAGAAGTGCTGAGGCGGCGACAGCCGGGACGAACGCTA
GGCGAGGGGTAAGTGCAGAGGAAGGTAGAAGAGGCGCGTTTGGAGACGAG
AGCCCTATCGAACGCCCAAGAAGTGTTGAACGTGGCAGTATCAGGCAGCA
GCGGCAGCGGCGGTGGCGGCGGCGACGGTTGTACTCAAACGACGGTATTG
GAAGCGAGGGCGGCGGCGGTGGGGAACAAACAAATTCGGAGGGAGAACAG
GACACCGACGGAGAGTGCGAGGAGGAGGAAGGTGGCGACGACGATACCGG
TGGTGATAGCCAGGCACAGGAAGAGGGGGTAGCAGAAGGAGTGAGCTACG
GGTTGCATCCGGGACGGCGATGGACCTCGGAGCGAGGGGAGGGAAATGGA
GGCCACGCAGACGGGAGGGGGCGGGGAAGGGGGGGAGGTGCTCCTCGAAG
GAGGAGGAGGAGGCCGAGAAGTCGCGATGGTGGGGGCAGTCTCGGCACTA
GAAAAAGCAGGGAGGCGAACAGGTTGAGGTGTACCCGGGGATATCAACAG
CATCTGGAGGGGAGATTGGAACTCACCCAGCGGCACTTGCGGGAACTGGA
GCGCCTCGAAAGTTCGTACCACGAAACGCTAAGAAGGGACAGGCAGGAGA
GAGAGATGCACGCTCAGGTCCAGAAGGACAACGCCGCCCGCGTCGTGGAA
AGCCTTGGACGGAGCGGCACTTGCGGGAACTGGAGCGCCTCGAAAGTTCG
TACCACGAAACGCTAAGAAGGGACAGGCAGGAGAGAGAGATGCACGCTCA
GGTCCAGAAGGACAACGCCGCCCGCGTCGTGGAAAGCCTTGGACGGAGGA
CCGCCGAGGTGGAGAAGCGGTTATCCGGGGCAACCGACGACTACCTTCGC
CTGAGACACAAGGCCAAAGAAGCACACGCCGTGTCTGCGGAGGAGCAAAG
GCAGTGCGGCGAGGAGCGGGAAAAGGACCGCCGAGGTGGAGAAGCGGTTA
TCCGGGGCAACCGACGACTACCTTCGCCTGAGACACAAGGCCAAAGAAGC
ACACGCCGTGTCTGCGGAGGAGCAAAGGCAGTGCGGCGAGGAGCGGGAAA
AG
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