mRNA_E-fasciculatus_F_contig15141.3646.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15141.3646.1
Unique NamemRNA_E-fasciculatus_F_contig15141.3646.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15141.3646.1 vs. uniprot
Match: A0A6H5L9J7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9J7_9PHAE)

HSP 1 Score: 716 bits (1847), Expect = 5.860e-246
Identity = 476/644 (73.91%), Postives = 503/644 (78.11%), Query Frame = 1 
Query:    1 KVASIIEHGGDDPQIPRDVIDGCGTLPAGAQDETATDTSNRVDSKSHPGEARGGSVEVVEGAAAVLMEAAVGAGEGGSAAPAAAGRVKTADRSSLRSPSAISITADGVPVVARADEDENAXXXXXXXXXXCPRCGARVPCACGGARGXXXXXXXXXXNATPGRRFGSPQQSKGLRNVMSWATGGSITPPAGRGSEGDDGDSQDGSRSSNDGNRNGIERRRRRLADDEKGTTGWNSESSGGSVRSFSSAESFNKSSSSHGSRWRDRRKTGDGGKYSSSSPRDSGGASVVSSGGVRKRSSSRGTGFRKSQEGDDGVGGGSDHETDSVDRSDNCLAAPARXXXXXXXXAHSSTRLKRVSGSSSAEASGCPDGGESEGEGMAAAVGAATTKDGDSMRRRGSSNTGVTDNGYEDQGEGTARLARSQPRGVDERTPASATLAGTTESKAALHEASPTEEAGIAPTRRRQGDGAETEFSSKGTSPGSPHLVAVESGASEKETRQSGSSTSPAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLDRLALTPRTPRSPRIVGSDSEPFKSAKRLSEALTFAASSSEEDFLTGTATAAAAGSTGPTPRRESGALEGALAIVEEARGVHEGMTIGGRVAEGRGNSAAVLGAPS 1932
            +VASIIEHGGDDPQIP DV DGCGTLPAG QDETATDT NR DSKSHPGEARGGSVE VEGAA V ME A G GEGG AA AAAGR +T DR+S+RSPSAISITA+GVPV  RADEDEN  XXXXXXXXX                 XXXXXXXXXXNATPGRRFGSPQQSKGLRNVMSWATGGSITPPAGRGSEGDDGDSQDGSRSSND  R+GIERRRR   D EKGTT W+S SSGGSV+SFSSAESFNKSSSSHGSRWRDRRKTGDG KYSS SPR SG +S+V +GG RK  S RGTGF+KS+EGDDGV  G DHE                XXXXXXXX       KRVSGSSSAEASGCPDGGESEGEGMAAAV   TT+D DSMRRRGSSNTGV+D GYED+GEGT RLA SQP GVD+ + A +  A TT+S AALHEASPTE AG APTRRRQGDGAET+ SSKGTSPGSPH+VAVE GASEK  RQSGSSTSPAIR                            + LDR ALTPRTPRSPRIVGSDSEPFKS++RLSEALTFAASSSEED +T TATAAA GSTG TPRRESGAL GALA VEEA+ V E MTIG RVAEGRGN AAVLGAPS
Sbjct:  394 QVASIIEHGGDDPQIPPDVTDGCGTLPAGTQDETATDTLNRADSKSHPGEARGGSVEGVEGAAGVPMETAGGVGEGGFAAVAAAGRTRTVDRNSVRSPSAISITANGVPVGGRADEDENVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATPGRRFGSPQQSKGLRNVMSWATGGSITPPAGRGSEGDDGDSQDGSRSSNDVKRDGIERRRR-STDYEKGTTEWHSASSGGSVKSFSSAESFNKSSSSHGSRWRDRRKTGDGVKYSSRSPRGSG-SSIVGNGGDRKHRS-RGTGFQKSEEGDDGVXXGGDHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRVSGSSSAEASGCPDGGESEGEGMAAAVXXXTTEDSDSMRRRGSSNTGVSDKGYEDKGEGTPRLAPSQPPGVDDESTAVSVQADTTKSNAALHEASPTE-AGTAPTRRRQGDGAETQDSSKGTSPGSPHIVAVEGGASEKGIRQSGSSTSPAIRRSSTAAAA--------------------IALDRFALTPRTPRSPRIVGSDSEPFKSSRRLSEALTFAASSSEEDIITATATAAA-GSTGHTPRRESGALGGALATVEEAKSVREEMTIGRRVAEGRGNPAAVLGAPS 1012
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15141.3646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9J7_9PHAE5.860e-24673.91Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15141contigE-fasciculatus_F_contig15141:1087..3021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score774.2
Seed ortholog evalue4.6e-221
Seed eggNOG ortholog2880.D7FHW8
KEGG koko:K08857
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSerine/threonine/dual specificity protein kinase, catalytic domain
Ec32 orthologEc-12_006180.1
Exons1
Model size1935
Cds size1935
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927995.0165446-CDS-E-fasciculatus_F_contig15141:1086..30211622927995.0165446-CDS-E-fasciculatus_F_contig15141:1086..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15141 1087..3021 -
1695995781.865636-CDS-E-fasciculatus_F_contig15141:1086..30211695995781.865636-CDS-E-fasciculatus_F_contig15141:1086..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15141 1087..3021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15141.3646.1prot_E-fasciculatus_F_contig15141.3646.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15141 1087..3021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15141.3646.1

>prot_E-fasciculatus_F_contig15141.3646.1 ID=prot_E-fasciculatus_F_contig15141.3646.1|Name=mRNA_E-fasciculatus_F_contig15141.3646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=645bp
KVASIIEHGGDDPQIPRDVIDGCGTLPAGAQDETATDTSNRVDSKSHPGE
ARGGSVEVVEGAAAVLMEAAVGAGEGGSAAPAAAGRVKTADRSSLRSPSA
ISITADGVPVVARADEDENAVAAAAAGGGGCPRCGARVPCACGGARGGGG
GGAGGGGNATPGRRFGSPQQSKGLRNVMSWATGGSITPPAGRGSEGDDGD
SQDGSRSSNDGNRNGIERRRRRLADDEKGTTGWNSESSGGSVRSFSSAES
FNKSSSSHGSRWRDRRKTGDGGKYSSSSPRDSGGASVVSSGGVRKRSSSR
GTGFRKSQEGDDGVGGGSDHETDSVDRSDNCLAAPARPKSPRSPRAHSST
RLKRVSGSSSAEASGCPDGGESEGEGMAAAVGAATTKDGDSMRRRGSSNT
GVTDNGYEDQGEGTARLARSQPRGVDERTPASATLAGTTESKAALHEASP
TEEAGIAPTRRRQGDGAETEFSSKGTSPGSPHLVAVESGASEKETRQSGS
STSPAIRRSSTTAAAAVAASASGPDGTAAAAVGGGVVLDRLALTPRTPRS
PRIVGSDSEPFKSAKRLSEALTFAASSSEEDFLTGTATAAAAGSTGPTPR
RESGALEGALAIVEEARGVHEGMTIGGRVAEGRGNSAAVLGAPS*
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mRNA from alignment at E-fasciculatus_F_contig15141:1087..3021-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15141.3646.1 ID=mRNA_E-fasciculatus_F_contig15141.3646.1|Name=mRNA_E-fasciculatus_F_contig15141.3646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1935bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15141:1087..3021- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGCTTCGATCATCGAGCACGGAGGTGACGATCCTCAGATCCCTCG
GGACGTCATCGACGGCTGCGGGACTCTGCCCGCCGGAGCTCAAGACGAGA
CCGCTACGGACACCTCGAACCGTGTCGACTCCAAGAGCCACCCGGGAGAG
GCACGAGGAGGGAGCGTTGAGGTGGTGGAAGGGGCTGCTGCTGTTCTGAT
GGAAGCGGCGGTGGGGGCAGGGGAAGGTGGGTCTGCGGCGCCTGCTGCCG
CCGGCAGGGTGAAGACGGCCGACAGGAGCTCTTTAAGGAGCCCGAGTGCG
ATCAGCATAACGGCTGACGGTGTCCCGGTGGTGGCAAGAGCGGACGAGGA
CGAAAACGCGGTGGCGGCGGCGGCCGCCGGAGGGGGGGGTTGCCCCCGTT
GCGGGGCGCGGGTACCTTGCGCGTGCGGGGGGGCGCGAGGTGGCGGAGGC
GGCGGAGCAGGCGGGGGCGGAAACGCCACCCCCGGGCGCCGATTCGGCTC
CCCTCAGCAGAGCAAGGGACTGCGAAATGTCATGTCGTGGGCTACGGGCG
GTTCGATCACGCCCCCCGCCGGTAGAGGCAGCGAGGGCGATGACGGCGAC
TCACAAGACGGGTCGCGATCGAGCAATGACGGCAACCGCAACGGGATCGA
AAGAAGACGACGACGGTTGGCGGACGATGAGAAAGGTACCACGGGGTGGA
ATTCAGAGTCCAGCGGCGGCAGCGTCAGATCGTTTTCGTCGGCGGAATCG
TTCAACAAATCGTCCAGCTCGCATGGCTCGCGCTGGAGGGACAGGCGAAA
AACCGGCGATGGCGGCAAGTACTCCAGCAGCAGTCCGAGAGATAGTGGTG
GTGCAAGTGTTGTTAGTAGCGGTGGAGTCAGAAAACGTAGTAGTAGTCGG
GGTACGGGTTTTCGAAAGTCGCAGGAGGGCGACGACGGCGTCGGTGGTGG
CAGTGATCACGAAACCGACAGCGTCGATCGCAGCGACAACTGCCTTGCCG
CGCCCGCCCGCCCGAAGTCTCCGCGCTCCCCGCGGGCTCACAGCTCCACG
AGACTGAAGCGTGTGAGCGGCAGCAGCAGCGCAGAGGCCAGCGGGTGTCC
GGACGGGGGCGAGTCCGAGGGTGAGGGGATGGCGGCGGCGGTGGGGGCGG
CGACAACCAAGGACGGCGACTCCATGCGGAGAAGAGGGAGTAGTAACACT
GGTGTGACGGACAATGGCTACGAAGACCAGGGAGAAGGGACCGCTCGACT
CGCACGGAGTCAACCACGAGGGGTCGACGAGAGGACACCGGCGTCGGCGA
CACTAGCAGGCACCACTGAGTCGAAGGCGGCGCTTCACGAAGCGTCGCCG
ACAGAAGAAGCCGGGATAGCACCCACCAGAAGAAGACAAGGAGACGGAGC
CGAGACGGAATTTTCATCCAAGGGGACGAGTCCGGGCTCACCTCATCTTG
TTGCGGTAGAAAGCGGGGCAAGCGAAAAGGAGACCCGGCAGAGCGGCAGC
TCCACCAGCCCAGCAATACGAAGGAGTTCGACTACAGCCGCGGCCGCGGT
AGCAGCCTCAGCGTCAGGACCCGATGGAACGGCGGCGGCGGCGGTGGGAG
GGGGGGTGGTATTGGATCGCTTAGCGCTCACTCCCCGAACGCCGCGCTCG
CCGCGCATCGTCGGCTCCGACTCTGAGCCGTTCAAGTCGGCCAAGAGGTT
ATCGGAGGCCCTGACGTTCGCCGCTAGCAGCAGCGAGGAAGATTTTCTCA
CGGGCACAGCCACCGCTGCTGCCGCCGGAAGTACAGGCCCTACCCCGAGG
AGGGAGTCTGGCGCTCTCGAAGGGGCGTTGGCCATTGTAGAAGAGGCCAG
GGGCGTGCACGAGGGAATGACCATAGGAGGACGAGTAGCAGAGGGCCGGG
GGAATTCTGCCGCGGTATTAGGGGCTCCGTCGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15141:1087..3021-

>mRNA_E-fasciculatus_F_contig15141.3646.1 ID=mRNA_E-fasciculatus_F_contig15141.3646.1|Name=mRNA_E-fasciculatus_F_contig15141.3646.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3870bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15141:1087..3021- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGGCTTCGATCATCGAGCACGGAGGTGACGATCCTCAGATCCCTCG
GGACGTCATCGACGGCTGCGGGACTCTGCCCGCCGGAGCTCAAGACGAGA
CCGCTACGGACACCTCGAACCGTGTCGACTCCAAGAGCCACCCGGGAGAG
GCACGAGGAGGGAGCGTTGAGGTGGTGGAAGGGGCTGCTGCTGTTCTGAT
GGAAGCGGCGGTGGGGGCAGGGGAAGGTGGGTCTGCGGCGCCTGCTGCCG
CCGGCAGGGTGAAGACGGCCGACAGGAGCTCTTTAAGGAGCCCGAGTGCG
ATCAGCATAACGGCTGACGGTGTCCCGGTGGTGGCAAGAGCGGACGAGGA
CGAAAACGCGGTGGCGGCGGCGGCCGCCGGAGGGGGGGGTTGCCCCCGTT
GCGGGGCGCGGGTACCTTGCGCGTGCGGGGGGGCGCGAGGTGGCGGAGGC
GGCGGAGCAGGCGGGGGCGGAAACGCCACCCCCGGGCGCCGATTCGGCTC
CCCTCAGCAGAGCAAGGGACTGCGAAATGTCATGTCGTGGGCTACGGGCG
GTTCGATCACGCCCCCCGCCGGTAGAGGCAGCGAGGGCGATGACGGCGAC
TCACAAGACGGGTCGCGATCGAGCAATGACGGCAACCGCAACGGGATCGA
AAGAAGACGACGACGGTTGGCGGACGATGAGAAAGGTACCACGGGGTGGA
ATTCAGAGTCCAGCGGCGGCAGCGTCAGATCGTTTTCGTCGGCGGAATCG
TTCAACAAATCGTCCAGCTCGCATGGCTCGCGCTGGAGGGACAGGCGAAA
AACCGGCGATGGCGGCAAGTACTCCAGCAGCAGTCCGAGAGATAGTGGTG
GTGCAAGTGTTGTTAGTAGCGGTGGAGTCAGAAAACGTAGTAGTAGTCGG
GGTACGGGTTTTCGAAAGTCGCAGGAGGGCGACGACGGCGTCGGTGGTGG
CAGTGATCACGAAACCGACAGCGTCGATCGCAGCGACAACTGCCTTGCCG
CGCCCGCCCGCCCGAAGTCTCCGCGCTCCCCGCGGGCTCACAGCTCCACG
AGACTGAAGCGTGTGAGCGGCAGCAGCAGCGCAGAGGCCAGCGGGTGTCC
GGACGGGGGCGAGTCCGAGGGTGAGGGGATGGCGGCGGCGGTGGGGGCGG
CGACAACCAAGGACGGCGACTCCATGCGGAGAAGAGGGAGTAGTAACACT
GGTGTGACGGACAATGGCTACGAAGACCAGGGAGAAGGGACCGCTCGACT
CGCACGGAGTCAACCACGAGGGGTCGACGAGAGGACACCGGCGTCGGCGA
CACTAGCAGGCACCACTGAGTCGAAGGCGGCGCTTCACGAAGCGTCGCCG
ACAGAAGAAGCCGGGATAGCACCCACCAGAAGAAGACAAGGAGACGGAGC
CGAGACGGAATTTTCATCCAAGGGGACGAGTCCGGGCTCACCTCATCTTG
TTGCGGTAGAAAGCGGGGCAAGCGAAAAGGAGACCCGGCAGAGCGGCAGC
TCCACCAGCCCAGCAATACGAAGGAGTTCGACTACAGCCGCGGCCGCGGT
AGCAGCCTCAGCGTCAGGACCCGATGGAACGGCGGCGGCGGCGGTGGGAG
GGGGGGTGGTATTGGATCGCTTAGCGCTCACTCCCCGAACGCCGCGCTCG
CCGCGCATCGTCGGCTCCGACTCTGAGCCGTTCAAGTCGGCCAAGAGGTT
ATCGGAGGCCCTGACGTTCGCCGCTAGCAGCAGCGAGGAAGATTTTCTCA
CGGGCACAGCCACCGCTGCTGCCGCCGGAAGTACAGGCCCTACCCCGAGG
AGGGAGTCTGGCGCTCTCGAAGGGGCGTTGGCCATTGTAGAAGAGGCCAG
GGGCGTGCACGAGGGAATGACCATAGGAGGACGAGTAGCAGAGGGCCGGG
GGAATTCTGCCGCGGTATTAGGGGCTCCGTCGTAGAAGGTGGCTTCGATC
ATCGAGCACGGAGGTGACGATCCTCAGATCCCTCGGGACGTCATCGACGG
CTGCGGGACTCTGCCCGCCGGAGCTCAAGACGAGACCGCTACGGACACCT
CGAACCGTGTCGACTCCAAGAGCCACCCGGGAGAGGCACGAGGAGGGAGC
GTTGAGGTGGTGGAAGGGGCTGCTGCTGTTCTGATGGAAGCGGCGGTGGG
GGCAGGGGAAGGTGGGTCTGCGGCGCCTGCTGCCGCCGGCAGGGTGAAGA
CGGCCGACAGGAGCTCTTTAAGGAGCCCGAGTGCGATCAGCATAACGGCT
GACGGTGTCCCGGTGGTGGCAAGAGCGGACGAGGACGAAAACGCGGTGGC
GGCGGCGGCCGCCGGAGGGGGGGGTTGCCCCCGTTGCGGGGCGCGGGTAC
CTTGCGCGTGCGGGGGGGCGCGAGGTGGCGGAGGCGGCGGAGCAGGCGGG
GGCGGAAACGCCACCCCCGGGCGCCGATTCGGCTCCCCTCAGCAGAGCAA
GGGACTGCGAAATGTCATGTCGTGGGCTACGGGCGGTTCGATCACGCCCC
CCGCCGGTAGAGGCAGCGAGGGCGATGACGGCGACTCACAAGACGGGTCG
CGATCGAGCAATGACGGCAACCGCAACGGGATCGAAAGAAGACGACGACG
GTTGGCGGACGATGAGAAAGGTACCACGGGGTGGAATTCAGAGTCCAGCG
GCGGCAGCGTCAGATCGTTTTCGTCGGCGGAATCGTTCAACAAATCGTCC
AGCTCGCATGGCTCGCGCTGGAGGGACAGGCGAAAAACCGGCGATGGCGG
CAAGTACTCCAGCAGCAGTCCGAGAGATAGTGGTGGTGCAAGTGTTGTTA
GTAGCGGTGGAGTCAGAAAACGTAGTAGTAGTCGGGGTACGGGTTTTCGA
AAGTCGCAGGAGGGCGACGACGGCGTCGGTGGTGGCAGTGATCACGAAAC
CGACAGCGTCGATCGCAGCGACAACTGCCTTGCCGCGCCCGCCCGCCCGA
AGTCTCCGCGCTCCCCGCGGGCTCACAGCTCCACGAGACTGAAGCGTGTG
AGCGGCAGCAGCAGCGCAGAGGCCAGCGGGTGTCCGGACGGGGGCGAGTC
CGAGGGTGAGGGGATGGCGGCGGCGGTGGGGGCGGCGACAACCAAGGACG
GCGACTCCATGCGGAGAAGAGGGAGTAGTAACACTGGTGTGACGGACAAT
GGCTACGAAGACCAGGGAGAAGGGACCGCTCGACTCGCACGGAGTCAACC
ACGAGGGGTCGACGAGAGGACACCGGCGTCGGCGACACTAGCAGGCACCA
CTGAGTCGAAGGCGGCGCTTCACGAAGCGTCGCCGACAGAAGAAGCCGGG
ATAGCACCCACCAGAAGAAGACAAGGAGACGGAGCCGAGACGGAATTTTC
ATCCAAGGGGACGAGTCCGGGCTCACCTCATCTTGTTGCGGTAGAAAGCG
GGGCAAGCGAAAAGGAGACCCGGCAGAGCGGCAGCTCCACCAGCCCAGCA
ATACGAAGGAGTTCGACTACAGCCGCGGCCGCGGTAGCAGCCTCAGCGTC
AGGACCCGATGGAACGGCGGCGGCGGCGGTGGGAGGGGGGGTGGTATTGG
ATCGCTTAGCGCTCACTCCCCGAACGCCGCGCTCGCCGCGCATCGTCGGC
TCCGACTCTGAGCCGTTCAAGTCGGCCAAGAGGTTATCGGAGGCCCTGAC
GTTCGCCGCTAGCAGCAGCGAGGAAGATTTTCTCACGGGCACAGCCACCG
CTGCTGCCGCCGGAAGTACAGGCCCTACCCCGAGGAGGGAGTCTGGCGCT
CTCGAAGGGGCGTTGGCCATTGTAGAAGAGGCCAGGGGCGTGCACGAGGG
AATGACCATAGGAGGACGAGTAGCAGAGGGCCGGGGGAATTCTGCCGCGG
TATTAGGGGCTCCGTCGTAG
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