mRNA_E-fasciculatus_F_contig1513.3642.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1513.3642.1
Unique NamemRNA_E-fasciculatus_F_contig1513.3642.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1513.3642.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.950e-121
Identity = 263/299 (87.96%), Postives = 271/299 (90.64%), Query Frame = 1 
Query:    1 LTSLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHIPDGMLQRLDTIAQSSGRQTHHRPGISTEATNIGIFTTSPGRGVLDDGGSVPSRRNNSVLGSETLSARATGGGGLENNSGDGRPGWRWRSNTSRIEYHVPLADDAHDGAAGVGPAAISTGDGGRDDVQREERGGGEGRTTFPSISRKAGPTSADSRPSSRVHSAGRAGSNSGDGVRSSDDEHDEL 897
            L  LKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPH+PDGMLQRLDTIAQ SGR+THH  GIST A N   FTTS GR   D GGS+ SRR+N+VL S+TLSARATGGG  ENN GDGR GWRWRSNT RIE+HVPL DDAHDGAAGVGPAAISTGDGGRDD QREERGG EGRTTFPSISRKAG TSADSRPSSRVHSAGRA S+SGDGVRSSDDEHDE 
Sbjct:   14 LDRLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFESQGPHVPDGMLQRLDTIAQRSGRRTHHHLGISTAAINTSTFTTSSGRSAQDGGGSMSSRRSNTVLDSDTLSARATGGGVPENNIGDGRSGWRWRSNTGRIEHHVPLTDDAHDGAAGVGPAAISTGDGGRDDAQREERGGVEGRTTFPSISRKAGSTSADSRPSSRVHSAGRAASSSGDGVRSSDDEHDEF 312
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BLAST of mRNA_E-fasciculatus_F_contig1513.3642.1 vs. uniprot
Match: A0A836CF95_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF95_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.120e-9
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LTSLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLL 129
            L  LKESFL AAAKGGRV+EC SLLE+G D+NW SPE DT LL
Sbjct:   13 LHRLKESFLLAAAKGGRVDECRSLLELGADVNWSSPEQDTCLL 55
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BLAST of mRNA_E-fasciculatus_F_contig1513.3642.1 vs. uniprot
Match: A0A7S1U254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U254_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.230e-9
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 LTSLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDT 120
            L  LKESFLWAAA+GGR EECESLLEMG D+NW    GD+
Sbjct:   11 LERLKESFLWAAARGGREEECESLLEMGADVNWTHQNGDS 50
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BLAST of mRNA_E-fasciculatus_F_contig1513.3642.1 vs. uniprot
Match: A0A8J2SNL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.330e-6
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 LTSLKESFLWAAAKGGRVEECESLLEMGTDINWVS-PEGDTPLL 129
            L  +KESFLWAAAKGGR EE ESLL +G D+NW +  EG+TPL+
Sbjct:    7 LDRMKESFLWAAAKGGREEEVESLLSIGADVNWRNGDEGETPLI 50
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1513.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNM2_ECTSI1.950e-12187.96Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A836CF95_9STRA1.120e-974.42Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A7S1U254_9STRA2.230e-972.50Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2SNL1_9STRA1.330e-665.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1513contigE-fasciculatus_F_contig1513:14721..17388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.6
Seed ortholog evalue1.1e-97
Seed eggNOG ortholog2880.D7FNM2
KEGG koko:K15502
EggNOG free text desc.EP4 subtype prostaglandin E2 receptor binding
EggNOG OGsCOG0666@1,KOG0508@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004960.1
Exons5
Model size1077
Cds size1077
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1513.3642.1prot_E-fasciculatus_F_contig1513.3642.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1513 14721..17388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.600089-CDS-E-fasciculatus_F_contig1513:14720..149061622927994.600089-CDS-E-fasciculatus_F_contig1513:14720..14906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 14721..14906 -
1695995781.6954482-CDS-E-fasciculatus_F_contig1513:14720..149061695995781.6954482-CDS-E-fasciculatus_F_contig1513:14720..14906Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 14721..14906 -
1622927994.6147575-CDS-E-fasciculatus_F_contig1513:15362..155401622927994.6147575-CDS-E-fasciculatus_F_contig1513:15362..15540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 15363..15540 -
1695995781.7098436-CDS-E-fasciculatus_F_contig1513:15362..155401695995781.7098436-CDS-E-fasciculatus_F_contig1513:15362..15540Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 15363..15540 -
1622927994.631606-CDS-E-fasciculatus_F_contig1513:15868..162711622927994.631606-CDS-E-fasciculatus_F_contig1513:15868..16271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 15869..16271 -
1695995781.718821-CDS-E-fasciculatus_F_contig1513:15868..162711695995781.718821-CDS-E-fasciculatus_F_contig1513:15868..16271Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 15869..16271 -
1622927994.6456776-CDS-E-fasciculatus_F_contig1513:16612..168341622927994.6456776-CDS-E-fasciculatus_F_contig1513:16612..16834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 16613..16834 -
1695995781.7277138-CDS-E-fasciculatus_F_contig1513:16612..168341695995781.7277138-CDS-E-fasciculatus_F_contig1513:16612..16834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 16613..16834 -
1622927994.656083-CDS-E-fasciculatus_F_contig1513:17300..173881622927994.656083-CDS-E-fasciculatus_F_contig1513:17300..17388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 17301..17388 -
1695995781.7367945-CDS-E-fasciculatus_F_contig1513:17300..173881695995781.7367945-CDS-E-fasciculatus_F_contig1513:17300..17388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 17301..17388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1513.3642.1

>prot_E-fasciculatus_F_contig1513.3642.1 ID=prot_E-fasciculatus_F_contig1513.3642.1|Name=mRNA_E-fasciculatus_F_contig1513.3642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=359bp
LTSLKESFLWAAAKGGRVEECESLLEMGTDINWVSPEGDTPLLAACRNGH
LQTALSLLSHGASANQVDKDGRTALHVSCLHGKEAVAEALILGGADVSAR
DNGGATAFESQGPHIPDGMLQRLDTIAQSSGRQTHHRPGISTEATNIGIF
TTSPGRGVLDDGGSVPSRRNNSVLGSETLSARATGGGGLENNSGDGRPGW
RWRSNTSRIEYHVPLADDAHDGAAGVGPAAISTGDGGRDDVQREERGGGE
GRTTFPSISRKAGPTSADSRPSSRVHSAGRAGSNSGDGVRSSDDEHDELL
HEDETRRRFLSSAYRGPGIRQRGSLPTRNRSIGNGDEISESMQLISAGEP
VPHAVRTRR
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mRNA from alignment at E-fasciculatus_F_contig1513:14721..17388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1513.3642.1 ID=mRNA_E-fasciculatus_F_contig1513.3642.1|Name=mRNA_E-fasciculatus_F_contig1513.3642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2668bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:14721..17388- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGACAAGCTTGAAGGAAAGTTTCCTCTGGGCTGCGGCGAAAGGCGGCCG
TGTAGAGGAGTGTGAGTCGCTTTTGGAGATGGGGACAGGTGAAAGTGGTC
ACAACAGACAGACAGGGTGTAGACCTTTAGGAGTGTGGTAGACCATAACT
TGCCGGACGTGTCTCCTCTATGCTATTTTCCCATCCCATCTACAGCAGTA
CTGCTGTGGACACAAGATCCTCACCTCTCGGTACGATAGGAGACTACGTA
GTAGACTAGTGTACTTGCGTGAGAGGGTTTTGCAGGCAAGACATGACAGC
ACAACGAGCATGCTGTCTTCCTTGCAGACTAAAGCTGTACGGTATGGTTG
AAAAGAAAGGCCGTAATCTTGACCCCACTTAACCCCATACATCCTTGACC
GCATCGTCATGGTGTGTGGGGCTGCTATCTGTAGGTTTTGTGCGAAAAAT
CACAAGGTTCCACGAACACCGAAGGTGCATCAGAAGCCTCGACGCCCTTT
CATCGTGTTCGCTTCAATTTTGCGCGCTGCGTGATTCGACCTCTATCGTG
CCAGATATAAACTGGGTGAGTCCGGAAGGAGACACTCCGTTGCTAGCCGC
CTGTCGCAACGGGCACCTTCAAACCGCCCTGTCTCTGCTCAGTCACGGCG
CCTCGGCAAACCAGGTGGACAAGGACGGGCGAACTGCCCTGCACGTCTCT
TGCCTCCATGGCAAGGAAGCGGTTGCGGAGGCATTGATCCTGGGGGGAGC
TGATGTATCCGCCAGGGACAACGGCGGTAAGCAAGTCTCGTGGTTGCGAC
TGGAACACGACCCTTGCGGTATCACATCGTACTGTATCTAACAGCCAACT
CCTCGAGAAAGCGATGAGCGCACCGAAAGGGTTATAAATACAAGCGGGGC
CGGGTTGCATGATCTATTGCAGCGATCTTGCTCTTGTCGGTGTTGATGGC
ATGGGTATCGCAGGAGGAGGGAGAGGCGTGGACTTGCCCGGGAGGATGAA
GAGGGCTGAATGGATTAGAGGCTTGTGGGGTACTCGCGACCTACCCGTCG
TTGATCCTCGAAAGTTAAACCGCGAACCCTCAGAAAAAGTTGCATTGTAC
GTACCCTATCAAACCAGGTGCGACGGCATTCGAGAGTCAAGGGCCGCACA
TCCCGGATGGCATGCTACAACGCCTCGACACCATCGCCCAGAGCAGCGGT
AGGCAGACCCACCACCGCCCCGGCATAAGCACCGAAGCCACTAACATCGG
GATATTCACCACTTCTCCTGGCAGGGGCGTTCTAGATGACGGTGGATCAG
TGCCAAGCAGGCGCAACAACTCCGTACTTGGTAGCGAAACGCTCAGCGCT
CGCGCCACCGGCGGGGGTGGGTTAGAAAACAATAGCGGTGACGGCAGGCC
GGGATGGCGCTGGCGGAGTAATACCAGTCGGATCGAGTATCACGTTCCCC
TTGCGGACGACGCCCATGATGGTGCCGCCGGTGTTGGCCCGGCAGCGATT
TCGACGGGCGACGGCGGCAGGTAGGATGTTGGTGCTACGACAATTAATTG
TTCGCGGTGAATTCTGTCTGCCTACGGTATTAGTCGAGAACGGTGATTCA
CCAGATTTCCACGTTTGGACAGGGCACAACACTACCATGTATTGCCTCAG
AGGGAGCTGGGTTTGTTTTAAGGGTAGTGTGCAAACGGCGGAGAGTGGGC
CTGTCGGCTTCCTATGGTCAACAGAATACGACCCAATGCCAATCCGCTTA
TATCTCTGTGGTACGTATATCGTGAGAACAACATCTTGATAACATTGAAC
CACGATCAGGTCGTGACGTTTCGGTTGATCTGTTCTCAATGCCTTCAGAG
ATGATGTCCAGAGAGAGGAGAGGGGGGGAGGGGAGGGAAGGACGACGTTT
CCATCCATTTCACGCAAAGCCGGGCCCACCAGTGCCGACAGCAGGCCATC
GTCGAGGGTCCACAGCGCCGGTCGGGCAGGGTCCAACAGCGGCGACGGAG
TCCGATCCAGCGACGACGAGCATGATGTGAGCGGAAGCCAGTGACAGCAC
AAGAGATTGCCTTGTACATCAATAGCTATAGAGACATGCAAAGAATAGAG
ACTAGCGACGCGAACTTTATGGCGTGAACGCGAATCGAAGCACTGCGGCA
ACAGAAGTTCACTGGTTGGCTGAGTGGCTTCAGCGCGCGAGGGGGGCGGC
GGGGCAGGAATGAGAGGACCAGTTTCGGGGCATTCCCTTGCCAGACAAGG
TGCATATTCAACGACAGTGCCGTGACTCTTTTTTACAAATGTTTAGAAAG
CCGTGTGCATACTCTAGATGCATGGACAAAGTTGGTGCGTTTTCCTCCTG
TTGGTTTCGTTTCGGGAGGACTGGGAAAAGAAGGGAGGGAGGGAACAGGC
TACACCGGCTGCCCAACACACGGACCTCCTCTCCCATGATTGTAAAGGAG
CCGGGCTCTTCATGGCCGTTGGTTTTGCACAGGAACTACTCCACGAAGAC
GAAACAAGACGTCGATTTCTCAGCAGCGCCTACCGCGGGCCCGGTATCAG
GCAACGTGGAAGCTTACCTACCAGAAATCGTAGCATAGGAAACGGTGACG
AGATATCTGAGAGCATGCAGCTCATATCGGCAGGCGAACCCGTTCCACAC
GCGGTAAGAACCCGGCGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1513:14721..17388-

>mRNA_E-fasciculatus_F_contig1513.3642.1 ID=mRNA_E-fasciculatus_F_contig1513.3642.1|Name=mRNA_E-fasciculatus_F_contig1513.3642.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2154bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:14721..17388- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGACAAGCTTGAAGGAAAGTTTCCTCTGGGCTGCGGCGAAAGGCGGCCG
TGTAGAGGAGTGTGAGTCGCTTTTGGAGATGGGGACAGCTGACAAGCTTG
AAGGAAAGTTTCCTCTGGGCTGCGGCGAAAGGCGGCCGTGTAGAGGAGTG
TGAGTCGCTTTTGGAGATGGGGACAGATATAAACTGGGTGAGTCCGGAAG
GAGACACTCCGTTGCTAGCCGCCTGTCGCAACGGGCACCTTCAAACCGCC
CTGTCTCTGCTCAGTCACGGCGCCTCGGCAAACCAGGTGGACAAGGACGG
GCGAACTGCCCTGCACGTCTCTTGCCTCCATGGCAAGGAAGCGGTTGCGG
AGGCATTGATCCTGGGGGGAGCTGATGTATCCGCCAGGGACAACGGCGAT
ATAAACTGGGTGAGTCCGGAAGGAGACACTCCGTTGCTAGCCGCCTGTCG
CAACGGGCACCTTCAAACCGCCCTGTCTCTGCTCAGTCACGGCGCCTCGG
CAAACCAGGTGGACAAGGACGGGCGAACTGCCCTGCACGTCTCTTGCCTC
CATGGCAAGGAAGCGGTTGCGGAGGCATTGATCCTGGGGGGAGCTGATGT
ATCCGCCAGGGACAACGGCGGTGCGACGGCATTCGAGAGTCAAGGGCCGC
ACATCCCGGATGGCATGCTACAACGCCTCGACACCATCGCCCAGAGCAGC
GGTAGGCAGACCCACCACCGCCCCGGCATAAGCACCGAAGCCACTAACAT
CGGGATATTCACCACTTCTCCTGGCAGGGGCGTTCTAGATGACGGTGGAT
CAGTGCCAAGCAGGCGCAACAACTCCGTACTTGGTAGCGAAACGCTCAGC
GCTCGCGCCACCGGCGGGGGTGGGTTAGAAAACAATAGCGGTGACGGCAG
GCCGGGATGGCGCTGGCGGAGTAATACCAGTCGGATCGAGTATCACGTTC
CCCTTGCGGACGACGCCCATGATGGTGCCGCCGGTGTTGGCCCGGCAGCG
ATTTCGACGGGCGACGGCGGCAGGTGCGACGGCATTCGAGAGTCAAGGGC
CGCACATCCCGGATGGCATGCTACAACGCCTCGACACCATCGCCCAGAGC
AGCGGTAGGCAGACCCACCACCGCCCCGGCATAAGCACCGAAGCCACTAA
CATCGGGATATTCACCACTTCTCCTGGCAGGGGCGTTCTAGATGACGGTG
GATCAGTGCCAAGCAGGCGCAACAACTCCGTACTTGGTAGCGAAACGCTC
AGCGCTCGCGCCACCGGCGGGGGTGGGTTAGAAAACAATAGCGGTGACGG
CAGGCCGGGATGGCGCTGGCGGAGTAATACCAGTCGGATCGAGTATCACG
TTCCCCTTGCGGACGACGCCCATGATGGTGCCGCCGGTGTTGGCCCGGCA
GCGATTTCGACGGGCGACGGCGGCAGAGATGATGTCCAGAGAGAGGAGAG
GGGGGGAGGGGAGGGAAGGACGACGTTTCCATCCATTTCACGCAAAGCCG
GGCCCACCAGTGCCGACAGCAGGCCATCGTCGAGGGTCCACAGCGCCGGT
CGGGCAGGGTCCAACAGCGGCGACGGAGTCCGATCCAGCGACGACGAGCA
TGATAGATGATGTCCAGAGAGAGGAGAGGGGGGGAGGGGAGGGAAGGACG
ACGTTTCCATCCATTTCACGCAAAGCCGGGCCCACCAGTGCCGACAGCAG
GCCATCGTCGAGGGTCCACAGCGCCGGTCGGGCAGGGTCCAACAGCGGCG
ACGGAGTCCGATCCAGCGACGACGAGCATGATGAACTACTCCACGAAGAC
GAAACAAGACGTCGATTTCTCAGCAGCGCCTACCGCGGGCCCGGTATCAG
GCAACGTGGAAGCTTACCTACCAGAAATCGTAGCATAGGAAACGGTGACG
AGATATCTGAGAGCATGCAGCTCATATCGGCAGGCGAACCCGTTCCACAC
GCGGTAAGAACCCGGCGTGAACTACTCCACGAAGACGAAACAAGACGTCG
ATTTCTCAGCAGCGCCTACCGCGGGCCCGGTATCAGGCAACGTGGAAGCT
TACCTACCAGAAATCGTAGCATAGGAAACGGTGACGAGATATCTGAGAGC
ATGCAGCTCATATCGGCAGGCGAACCCGTTCCACACGCGGTAAGAACCCG
GCGT
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