mRNA_E-fasciculatus_F_contig1513.3640.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1513.3640.1
Unique NamemRNA_E-fasciculatus_F_contig1513.3640.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: D7FNM1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.540e-35
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 RIVQQQLAKEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            RIVQQQLAKEEQRLCV+CQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS
Sbjct:  127 RIVQQQLAKEEQRLCVVCQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A482S6W3_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6W3_9ARCH)

HSP 1 Score: 82.0 bits (201), Expect = 2.610e-17
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   22 AKEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            A++EQRLCVICQENE++V+LLPCRHLC+C GCS    L +CPLCR+ I   + V+S
Sbjct:   82 AQKEQRLCVICQENEKTVVLLPCRHLCLCDGCSVHSALDMCPLCREAIVHKISVFS 137
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A7S2C4Y0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4Y0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.110e-15
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   25 KEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            + +QRLCVICQENE++ LLLPCRHLC+C+ CS R+EL  CPLCR  I + + V++
Sbjct:  126 ERDQRLCVICQENEKNTLLLPCRHLCLCKECSRREELDKCPLCRKGIDQKIDVFA 180
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A7S2G914_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G914_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.610e-15
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 RIVQQQLAKE-EQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            R++Q ++  E EQRLCV+CQE E+S L+LPCRHLC+C+ CS R EL  CPLCR  I + + VY+
Sbjct:  135 RLLQARVMNEREQRLCVVCQEREKSCLILPCRHLCLCKDCSRRSELKSCPLCRKPIEQKIDVYA 198
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A7S4DHZ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ0_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 3.290e-15
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 RIVQQQLAK------EEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            +I+++QL +      +EQ  CVICQEN +S+L+LPCRHLC+C+ CSE   L  CPLCR+ I E+L V+S
Sbjct:  132 KIIKEQLERASQNKSDEQNQCVICQENAKSILILPCRHLCLCQSCSENPRLKSCPLCRNDIKETLQVFS 200
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A482S078_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S078_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 4.090e-15
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   31 EQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVY 186
            +QRLC IC E++R+VLL+PCRHLC+C  CSE+  L LCP+CR+ I E + V+
Sbjct:   13 QQRLCTICMEDDRTVLLMPCRHLCLCSKCSEQSMLQLCPICRNRIQEKVTVF 64
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A7S3H223_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H223_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.520e-15
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   25 KEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            ++EQR+CV+CQE+E+SV+LLPCRHLCVC  CS    L +CPLCR+ I   + V+S
Sbjct:   80 QKEQRVCVVCQEHEKSVVLLPCRHLCVCDVCSTHDLLKMCPLCREPIAHKISVFS 134
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: H3GYG0_PHYRM (RING-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GYG0_PHYRM)

HSP 1 Score: 78.6 bits (192), Expect = 2.680e-14
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   25 KEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            + E +LCVIC  NE+S+L LPCRHLC+C+ CS RQE+T CP+CR  I E L VYS
Sbjct:  666 QNELKLCVICLSNEKSILCLPCRHLCLCKTCSSRQEVTKCPICRLEIEEMLAVYS 720
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: M4BY57_HYAAE (RING-type domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BY57_HYAAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.650e-14
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   25 KEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            + E +LCVIC  NE+ +L LPCRHLC+C  C+ RQE+T CP+CR  I E L VYS
Sbjct:   79 QNELKLCVICLANEKRILCLPCRHLCLCETCAYRQEVTKCPICRLEIAEVLAVYS 133
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BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Match: A0A662Y4F7_9STRA (RING-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y4F7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.690e-14
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   25 KEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPLCRDHITESLVVYS 189
            + E +LCVIC  NE+S+L LPCRHLC+C  CS RQE+  CP+CR  I E L VY+
Sbjct:  165 QNELKLCVICLSNEKSILCLPCRHLCLCETCSRRQEVVKCPICRLEIEEMLAVYA 219
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1513.3640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM1_ECTSI1.540e-3598.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A482S6W3_9ARCH2.610e-1762.50RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S2C4Y0_9STRA1.110e-1560.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2G914_9STRA1.610e-1556.25Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4DHZ0_HETAK3.290e-1552.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482S078_9ARCH4.090e-1557.69RING-type domain-containing protein n=1 Tax=archae... [more]
A0A7S3H223_9STRA8.520e-1558.18Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
H3GYG0_PHYRM2.680e-1461.82RING-type domain-containing protein n=1 Tax=Phytop... [more]
M4BY57_HYAAE4.650e-1458.18RING-type domain-containing protein n=1 Tax=Hyalop... [more]
A0A662Y4F7_9STRA9.690e-1458.18RING-type domain-containing protein n=1 Tax=Nothop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1513contigE-fasciculatus_F_contig1513:10774..11923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue9.2e-29
Seed eggNOG ortholog2880.D7FNM1
KEGG koko:K15693
GOsGO:0003674,GO:0005488,GO:0008270,GO:0043167,GO:0043169,GO:0046872,GO:0046914
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG4265@1,KOG4265@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size192
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1513.3640.1prot_E-fasciculatus_F_contig1513.3640.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1513 10994..11923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.5389721-UTR-E-fasciculatus_F_contig1513:10773..109931622927994.5389721-UTR-E-fasciculatus_F_contig1513:10773..10993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1513 10774..10993 -
1695995781.657531-UTR-E-fasciculatus_F_contig1513:10773..109931695995781.657531-UTR-E-fasciculatus_F_contig1513:10773..10993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1513 10774..10993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.5553343-CDS-E-fasciculatus_F_contig1513:10993..111281622927994.5553343-CDS-E-fasciculatus_F_contig1513:10993..11128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 10994..11128 -
1695995781.6712515-CDS-E-fasciculatus_F_contig1513:10993..111281695995781.6712515-CDS-E-fasciculatus_F_contig1513:10993..11128Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 10994..11128 -
1622927994.5679524-CDS-E-fasciculatus_F_contig1513:11866..119231622927994.5679524-CDS-E-fasciculatus_F_contig1513:11866..11923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 11867..11923 -
1695995781.684561-CDS-E-fasciculatus_F_contig1513:11866..119231695995781.684561-CDS-E-fasciculatus_F_contig1513:11866..11923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1513 11867..11923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1513.3640.1

>prot_E-fasciculatus_F_contig1513.3640.1 ID=prot_E-fasciculatus_F_contig1513.3640.1|Name=mRNA_E-fasciculatus_F_contig1513.3640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
RIVQQQLAKEEQRLCVICQENERSVLLLPCRHLCVCRGCSERQELTLCPL
CRDHITESLVVYS*
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mRNA from alignment at E-fasciculatus_F_contig1513:10774..11923-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1513.3640.1 ID=mRNA_E-fasciculatus_F_contig1513.3640.1|Name=mRNA_E-fasciculatus_F_contig1513.3640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1150bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:10774..11923- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAATCGTCCAGCAGCAACTCGCCAAAGAAGAACAGAGACTCTGCGTCAT
TTGCCAGGTGAGCAGTCTGCGTACAGACGAAGCCTATACCCTGTATTGTG
AAAGCATCTGTTCCGTTTCTCGTTTAACTTAAGGGAGGGGACGGGATACC
TTAACAGTGTCAGCACATATGGGACCGGGAGAGCTTAATGGCGCCAAATC
TTCAAACCGCGACGCCCCTCACCGTCCACTTTCCACATCGATACGGACGT
CTTGTCCGCACACATGCCCACGATGTTCGGCGTAGCAAGCGCACAGCACG
TTGGCTGCGTTGAAAAGGCTTAACGTCGAGTGCACAAACGGATTGCTCGA
AGGCATTTGTGCCTCGGAGACTCCTCAATCGAAGTGGGACAAATATCGAC
ATCGCCTTGCTCTCAAACACGATCGTTCGACAGCAATGGGGGGTCCTGAA
ACACCACTTTTCGACTCATACGAGTGGGGAGAAGGGGGGGGTGGAGAGCA
CCATGTGCTAGTGGATTTGTCCGCCTATAACATGATGATACATCGGAGTT
GAACTCGAGACTACAGGTCTGACTTTGGGTGCGTGCGTGGGGTGGCCGAT
CGAAGCCTATCAAACCACCCGAACGAGACACGCCGGAAGAAGGTGGCTTG
TGCATCTCCCACACCGCACTCCCAATGGACCCGTATGTTGACTTAATCGA
CCATGTAGGTATACAACATGCCAAAGATTTTCTAACTGCCACCCTCCTCT
CACACGCACACGCATCACCCCCGCCCCGCCGCCAACGGCCAACAGGAGAA
CGAGCGAAGCGTGCTCCTGCTACCGTGTCGCCATCTTTGCGTTTGCAGGG
GCTGCTCCGAGCGGCAAGAGCTAACCTTGTGTCCGCTATGCCGAGACCAC
ATCACCGAGAGCCTCGTCGTGTACTCCTGAACTCGAATAGTGATACAGCA
AGATGTCTTCTCTAGCGCGAGGCCACTACCACAACGAGACGGGGCACCTC
TCGGGTTTCCATGCGGCGGACAGGCGTCTTCTACAAGAGGATTTGTTCGG
GTAGAGAGAAAGGACAGGCGCGTGCGTCGATGGCTAGTTGTTTGACATCA
TCAGGTCGATGATCGTTTGAAATCGAGGGCTCTGGTAGTGTTCTCCTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1513:10774..11923-

>mRNA_E-fasciculatus_F_contig1513.3640.1 ID=mRNA_E-fasciculatus_F_contig1513.3640.1|Name=mRNA_E-fasciculatus_F_contig1513.3640.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1513:10774..11923- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAATCGTCCAGCAGCAACTCGCCAAAGAAGAACAGAGACTCTGCGTCAT
TTGCCAGAGAATCGTCCAGCAGCAACTCGCCAAAGAAGAACAGAGACTCT
GCGTCATTTGCCAGGAGAACGAGCGAAGCGTGCTCCTGCTACCGTGTCGC
CATCTTTGCGTTTGCAGGGGCTGCTCCGAGCGGCAAGAGCTAACCTTGTG
TCCGCTATGCCGAGACCACATCACCGAGAGCCTCGTCGTGTACTCCTGAG
AGAACGAGCGAAGCGTGCTCCTGCTACCGTGTCGCCATCTTTGCGTTTGC
AGGGGCTGCTCCGAGCGGCAAGAGCTAACCTTGTGTCCGCTATGCCGAGA
CCACATCACCGAGAGCCTCGTCGTGTACTCCTGA
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