mRNA_E-fasciculatus_F_contig1512.3630.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1512.3630.1
Unique NamemRNA_E-fasciculatus_F_contig1512.3630.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1512.3630.1 vs. uniprot
Match: A0A6H5L688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L688_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 9.120e-55
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 GGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEILRLRTFPQVRLVIGTASRASLREAGASCARMVVVRAGKSFPEQGASDADAESIGQLVE 327
            GGGY+VLVTPTLAQVS LVEAFEAPQVP MGFVVVCPLYDWNQERDQEEI RLR FPQVRLVIG ASRASL+EAGAS ARMVVVRAGKSFPEQGASDADAESIGQLVE
Sbjct:  661 GGGYMVLVTPTLAQVSMLVEAFEAPQVPKMGFVVVCPLYDWNQERDQEEIRRLRAFPQVRLVIGGASRASLKEAGASSARMVVVRAGKSFPEQGASDADAESIGQLVE 768
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BLAST of mRNA_E-fasciculatus_F_contig1512.3630.1 vs. uniprot
Match: D8LPX0_ECTSI (Cation chanel protein, possibly calcium-activated BK potassium channel, alpha subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.580e-43
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 GGGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEILRLRTFPQVRLVIGTASRASLREAGASCARMVVVRA 261
            GGGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEI RLR FPQVRLVIG ASRASLREAGAS ARMVVV A
Sbjct:  673 GGGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEIRRLREFPQVRLVIGAASRASLREAGASSARMVVVTA 759
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1512.3630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L688_9PHAE9.120e-5592.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPX0_ECTSI6.580e-4394.25Cation chanel protein, possibly calcium-activated ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1512contigE-fasciculatus_F_contig1512:22..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue9.1e-37
Seed eggNOG ortholog2880.D8LPX0
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categorysignal peptide
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.4390295-CDS-E-fasciculatus_F_contig1512:21..1981622927993.4390295-CDS-E-fasciculatus_F_contig1512:21..198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1512 22..198 +
1695995781.061685-CDS-E-fasciculatus_F_contig1512:21..1981695995781.061685-CDS-E-fasciculatus_F_contig1512:21..198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1512 22..198 +
1622927993.456446-CDS-E-fasciculatus_F_contig1512:495..6451622927993.456446-CDS-E-fasciculatus_F_contig1512:495..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1512 496..645 +
1695995781.0726843-CDS-E-fasciculatus_F_contig1512:495..6451695995781.0726843-CDS-E-fasciculatus_F_contig1512:495..645Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1512 496..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1512.3630.1prot_E-fasciculatus_F_contig1512.3630.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1512 22..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1512.3630.1

>prot_E-fasciculatus_F_contig1512.3630.1 ID=prot_E-fasciculatus_F_contig1512.3630.1|Name=mRNA_E-fasciculatus_F_contig1512.3630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
GGGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEE
ILRLRTFPQVRLVIGTASRASLREAGASCARMVVVRAGKSFPEQGASDAD
AESIGQLVE
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mRNA from alignment at E-fasciculatus_F_contig1512:22..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1512.3630.1 ID=mRNA_E-fasciculatus_F_contig1512.3630.1|Name=mRNA_E-fasciculatus_F_contig1512.3630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1512:22..647+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGCGGGGGCTATATTGTCCTTGTGACGCCCACGCTTGCTCAGGTTTC
CACGCTGGTTGAGGCGTTTGAGGCCCCGCAGGTGCCGACGATGGGCTTCG
TGGTCGTGTGTCCGCTGTACGACTGGAACCAGGAGCGGGACCAAGAGGAG
ATACTCCGGCTGCGGACGTTCCCGCAGGTACGTTTCGCCGGGGTAGGAGT
TTGGGGTAGAATTGTCGGAGGGTCTAAAGCTTTGTGGAGCTTAGTGTATT
CTCCGTGTGCTTTCTAGTGCTAGGTTTGGCCCGACGGACTTGTAGACGTC
GTCGGCGGCCTTTCGTGGAGGTTGGGTGTCCCTCTCGCAATAGATTGCTA
TCTACTCTTACCCCTGCAAGTCTGCAACGGTTAAACTGTCTTTGGGCCAT
TTCGAACTCACCACAAACCTAGACCCTCAGCGCATAGTGATGATCAATAC
CACGTGTGCTTGTTTCTCGCCCAGGTCCGTCTCGTGATCGGTACGGCCAG
CAGAGCGTCGCTGCGGGAGGCCGGCGCGAGCTGCGCGAGGATGGTCGTCG
TGAGGGCGGGGAAGAGCTTCCCCGAGCAGGGCGCGTCTGATGCCGATGCC
GAAAGCATAGGACAGCTGGTCGAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1512:22..647+

>mRNA_E-fasciculatus_F_contig1512.3630.1 ID=mRNA_E-fasciculatus_F_contig1512.3630.1|Name=mRNA_E-fasciculatus_F_contig1512.3630.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1512:22..647+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGCGGGGGCTATATTGTCCTTGTGACGCCCACGCTTGCTCAGGTTTC
CACGCTGGTTGAGGCGTTTGAGGCCCCGCAGGTGCCGACGATGGGCTTCG
TGGTCGTGTGTCCGCTGTACGACTGGAACCAGGAGCGGGACCAAGAGGAG
ATACTCCGGCTGCGGACGTTCCCGCAGGGGGGCGGGGGCTATATTGTCCT
TGTGACGCCCACGCTTGCTCAGGTTTCCACGCTGGTTGAGGCGTTTGAGG
CCCCGCAGGTGCCGACGATGGGCTTCGTGGTCGTGTGTCCGCTGTACGAC
TGGAACCAGGAGCGGGACCAAGAGGAGATACTCCGGCTGCGGACGTTCCC
GCAGGTCCGTCTCGTGATCGGTACGGCCAGCAGAGCGTCGCTGCGGGAGG
CCGGCGCGAGCTGCGCGAGGATGGTCGTCGTGAGGGCGGGGAAGAGCTTC
CCCGAGCAGGGCGCGTCTGATGCCGATGCCGAAAGCATAGGACAGCTGGT
CGAGGTCCGTCTCGTGATCGGTACGGCCAGCAGAGCGTCGCTGCGGGAGG
CCGGCGCGAGCTGCGCGAGGATGGTCGTCGTGAGGGCGGGGAAGAGCTTC
CCCGAGCAGGGCGCGTCTGATGCCGATGCCGAAAGCATAGGACAGCTGGT
CGAG
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