mRNA_E-fasciculatus_F_contig15110.3627.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15110.3627.1
Unique NamemRNA_E-fasciculatus_F_contig15110.3627.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15110.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15110contigE-fasciculatus_F_contig15110:2348..3121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size774
Cds size735
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.1295934-UTR-E-fasciculatus_F_contig15110:2347..23861622927993.1295934-UTR-E-fasciculatus_F_contig15110:2347..2386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15110 2348..2386 +
1695995780.9185443-UTR-E-fasciculatus_F_contig15110:2347..23861695995780.9185443-UTR-E-fasciculatus_F_contig15110:2347..2386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15110 2348..2386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.1441436-CDS-E-fasciculatus_F_contig15110:2386..31211622927993.1441436-CDS-E-fasciculatus_F_contig15110:2386..3121Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 2387..3121 +
1695995780.927515-CDS-E-fasciculatus_F_contig15110:2386..31211695995780.927515-CDS-E-fasciculatus_F_contig15110:2386..3121Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 2387..3121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15110.3627.1prot_E-fasciculatus_F_contig15110.3627.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15110 2387..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15110.3627.1

>prot_E-fasciculatus_F_contig15110.3627.1 ID=prot_E-fasciculatus_F_contig15110.3627.1|Name=mRNA_E-fasciculatus_F_contig15110.3627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=245bp
MGSKRARPWSRQPSGGVTGSAVATAAAAFALATLSVQGAGALSFHYHNNR
CLSAAAASSAPACTGSTTAGTSSSSGGGSRGERDDARAAAAAAARAAAHS
AVRRRNKQRNRRREALLSSATAAGSGGTSGGGAAVPATTALMPPPYDNQE
DSRGSSSSSSSRVRFIDSAPGTAVPGSATATAADTSALAAAAAAAHVLEP
PPRSRGGNADNTRAARPWTAVPSPRGRGTVTSTATATAAATATTC
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mRNA from alignment at E-fasciculatus_F_contig15110:2348..3121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15110.3627.1 ID=mRNA_E-fasciculatus_F_contig15110.3627.1|Name=mRNA_E-fasciculatus_F_contig15110.3627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=774bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15110:2348..3121+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCACATGAGAGCAGCACGCGGGACAGGCTGTAGTTGCGATGGGGAGCAA
GCGAGCGAGGCCGTGGAGCCGCCAACCCAGCGGTGGAGTTACGGGTTCAG
CTGTAGCGACCGCAGCCGCAGCCTTCGCGCTCGCGACTCTCTCCGTACAG
GGCGCAGGTGCCCTCTCTTTTCACTACCACAACAATCGATGCCTATCTGC
TGCTGCTGCCTCATCTGCACCCGCATGCACGGGCAGCACCACGGCGGGCA
CCAGCAGCAGCAGCGGCGGCGGAAGCAGAGGGGAGAGGGATGATGCCAGG
GCTGCTGCTGCTGCTGCTGCCAGAGCAGCTGCCCACAGCGCGGTGAGACG
ACGAAACAAGCAACGCAATCGAAGGAGAGAGGCCCTTCTGAGTAGTGCTA
CTGCTGCCGGCAGCGGAGGCACCAGCGGCGGCGGTGCAGCCGTTCCTGCT
ACTACCGCTCTCATGCCACCGCCGTACGACAACCAAGAAGACAGCAGGGG
GTCGAGCAGCAGCAGCAGCAGCAGGGTCAGGTTTATAGATTCTGCCCCTG
GCACTGCTGTGCCGGGTTCGGCCACAGCAACAGCAGCAGACACATCGGCG
CTTGCAGCAGCGGCAGCAGCAGCACACGTACTTGAACCACCACCGAGAAG
CAGGGGAGGCAACGCCGACAACACGAGAGCAGCTCGACCATGGACGGCGG
TGCCATCACCAAGAGGGAGAGGCACCGTGACTTCCACGGCTACGGCTACG
GCTGCTGCTACGGCTACCACGTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15110:2348..3121+

>mRNA_E-fasciculatus_F_contig15110.3627.1 ID=mRNA_E-fasciculatus_F_contig15110.3627.1|Name=mRNA_E-fasciculatus_F_contig15110.3627.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1470bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15110:2348..3121+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGAGCAAGCGAGCGAGGCCGTGGAGCCGCCAACCCAGCGGTGGAGT
TACGGGTTCAGCTGTAGCGACCGCAGCCGCAGCCTTCGCGCTCGCGACTC
TCTCCGTACAGGGCGCAGGTGCCCTCTCTTTTCACTACCACAACAATCGA
TGCCTATCTGCTGCTGCTGCCTCATCTGCACCCGCATGCACGGGCAGCAC
CACGGCGGGCACCAGCAGCAGCAGCGGCGGCGGAAGCAGAGGGGAGAGGG
ATGATGCCAGGGCTGCTGCTGCTGCTGCTGCCAGAGCAGCTGCCCACAGC
GCGGTGAGACGACGAAACAAGCAACGCAATCGAAGGAGAGAGGCCCTTCT
GAGTAGTGCTACTGCTGCCGGCAGCGGAGGCACCAGCGGCGGCGGTGCAG
CCGTTCCTGCTACTACCGCTCTCATGCCACCGCCGTACGACAACCAAGAA
GACAGCAGGGGGTCGAGCAGCAGCAGCAGCAGCAGGGTCAGGTTTATAGA
TTCTGCCCCTGGCACTGCTGTGCCGGGTTCGGCCACAGCAACAGCAGCAG
ACACATCGGCGCTTGCAGCAGCGGCAGCAGCAGCACACGTACTTGAACCA
CCACCGAGAAGCAGGGGAGGCAACGCCGACAACACGAGAGCAGCTCGACC
ATGGACGGCGGTGCCATCACCAAGAGGGAGAGGCACCGTGACTTCCACGG
CTACGGCTACGGCTGCTGCTACGGCTACCACGTGTATGGGGAGCAAGCGA
GCGAGGCCGTGGAGCCGCCAACCCAGCGGTGGAGTTACGGGTTCAGCTGT
AGCGACCGCAGCCGCAGCCTTCGCGCTCGCGACTCTCTCCGTACAGGGCG
CAGGTGCCCTCTCTTTTCACTACCACAACAATCGATGCCTATCTGCTGCT
GCTGCCTCATCTGCACCCGCATGCACGGGCAGCACCACGGCGGGCACCAG
CAGCAGCAGCGGCGGCGGAAGCAGAGGGGAGAGGGATGATGCCAGGGCTG
CTGCTGCTGCTGCTGCCAGAGCAGCTGCCCACAGCGCGGTGAGACGACGA
AACAAGCAACGCAATCGAAGGAGAGAGGCCCTTCTGAGTAGTGCTACTGC
TGCCGGCAGCGGAGGCACCAGCGGCGGCGGTGCAGCCGTTCCTGCTACTA
CCGCTCTCATGCCACCGCCGTACGACAACCAAGAAGACAGCAGGGGGTCG
AGCAGCAGCAGCAGCAGCAGGGTCAGGTTTATAGATTCTGCCCCTGGCAC
TGCTGTGCCGGGTTCGGCCACAGCAACAGCAGCAGACACATCGGCGCTTG
CAGCAGCGGCAGCAGCAGCACACGTACTTGAACCACCACCGAGAAGCAGG
GGAGGCAACGCCGACAACACGAGAGCAGCTCGACCATGGACGGCGGTGCC
ATCACCAAGAGGGAGAGGCACCGTGACTTCCACGGCTACGGCTACGGCTG
CTGCTACGGCTACCACGTGT
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