mRNA_E-fasciculatus_F_contig15110.3626.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15110.3626.1
Unique NamemRNA_E-fasciculatus_F_contig15110.3626.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15110.3626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15110contigE-fasciculatus_F_contig15110:1320..2196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005730.1
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927993.0793464-CDS-E-fasciculatus_F_contig15110:1320..14441622927993.0793464-CDS-E-fasciculatus_F_contig15110:1320..1444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 1321..1444 -
1695995780.8946078-CDS-E-fasciculatus_F_contig15110:1320..14441695995780.8946078-CDS-E-fasciculatus_F_contig15110:1320..1444Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 1321..1444 -
1622927993.094992-CDS-E-fasciculatus_F_contig15110:2032..21961622927993.094992-CDS-E-fasciculatus_F_contig15110:2032..2196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 2033..2196 -
1695995780.9060705-CDS-E-fasciculatus_F_contig15110:2032..21961695995780.9060705-CDS-E-fasciculatus_F_contig15110:2032..2196Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15110 2033..2196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15110.3626.1prot_E-fasciculatus_F_contig15110.3626.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15110 1321..2196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15110.3626.1

>prot_E-fasciculatus_F_contig15110.3626.1 ID=prot_E-fasciculatus_F_contig15110.3626.1|Name=mRNA_E-fasciculatus_F_contig15110.3626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp
SAQRHSKQVTRPHQNQSCTHRQEHMQAMSDGCGGTMSTSHLCSLRDEKRR
ERLEWLGDVVMEEAIVRLVARRALSALDCEEERQQQQQQQQRELKG
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mRNA from alignment at E-fasciculatus_F_contig15110:1320..2196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15110.3626.1 ID=mRNA_E-fasciculatus_F_contig15110.3626.1|Name=mRNA_E-fasciculatus_F_contig15110.3626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=877bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15110:1320..2196- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGCACAGCGTCACAGCAAGCAGGTCACACGGCCACACCAAAATCAGAG
TTGCACACACCGGCAGGAGCACATGCAGGCGATGAGCGACGGGTGTGGTG
GCACAATGTCCACTTCCCACCTTTGTTCGCTTCGTGACGAGAAAAGAAGA
GAGCGCCTCGAATGGTGAGACGGCAGCATAGTCTATACTACAATCACCTA
CAATATAGTCTATATCTATCCATCATTGCTTTACAGATGCATGCATTGTC
AAACGCATGCTACAGCAGCAAACAGCGCAACAGCAGTACACAGCCAAAAG
CGTTATGGCAGTATGTATGCATGTTACGACTTCCTGTTGATCAGGTTGTT
TGTGGTCTACCTTCTGTTGCTCAGGTAGAGCGTCTAGGCTTCTGGGGTTG
TGCGGATGCGGCGTAATGCTCTGAATGGGCTGGTACGTTGTGCTCTTGGG
CAAAAACCTGGTGCGGAGAGTGCTGGCTACGTTTTACTGCTGTCGTTGCC
ACCCACAATAGCCGCATGATAGTATCACCAACAAGGCTGTCGACGCCAGT
TTACAGTTTACAGACAGACGTGTTGGTTGTACGCCCGGCTACAGATGAGG
TGTGGACAACATTAACATTTGCGTTTCACACGTGTTCGTTGTGTACCCAG
CTTACGCTCTGTCTGTCTGTCGGCCTGTCCGTGTGTCTGAGTGTATCTCT
CCTCCCCCCCCTATCTCTCTCGCCACCTCCTCTCCAACTGTACCCAACCA
AGGCTCGGGGATGTCGTGATGGAAGAGGCGATCGTTCGACTCGTTGCCCG
CCGAGCTCTCTCTGCCCTGGACTGTGAAGAGGAGCGGCAGCAGCAGCAGC
AGCAGCAGCAGCGAGAACTGAAGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15110:1320..2196-

>mRNA_E-fasciculatus_F_contig15110.3626.1 ID=mRNA_E-fasciculatus_F_contig15110.3626.1|Name=mRNA_E-fasciculatus_F_contig15110.3626.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15110:1320..2196- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCGCACAGCGTCACAGCAAGCAGGTCACACGGCCACACCAAAATCAGAG
TTGCACACACCGGCAGGAGCACATGCAGGCGATGAGCGACGGGTGTGGTG
GCACAATGTCCACTTCCCACCTTTGTTCGCTTCGTGACGAGAAAAGAAGA
GAGCGCCTCGAATGAGCGCACAGCGTCACAGCAAGCAGGTCACACGGCCA
CACCAAAATCAGAGTTGCACACACCGGCAGGAGCACATGCAGGCGATGAG
CGACGGGTGTGGTGGCACAATGTCCACTTCCCACCTTTGTTCGCTTCGTG
ACGAGAAAAGAAGAGAGCGCCTCGAATGGCTCGGGGATGTCGTGATGGAA
GAGGCGATCGTTCGACTCGTTGCCCGCCGAGCTCTCTCTGCCCTGGACTG
TGAAGAGGAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAACTGAAGG
GGGCTCGGGGATGTCGTGATGGAAGAGGCGATCGTTCGACTCGTTGCCCG
CCGAGCTCTCTCTGCCCTGGACTGTGAAGAGGAGCGGCAGCAGCAGCAGC
AGCAGCAGCAGCGAGAACTGAAGGGG
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