mRNA_E-fasciculatus_F_contig1511.3624.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1511.3624.1
Unique NamemRNA_E-fasciculatus_F_contig1511.3624.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1511.3624.1 vs. uniprot
Match: D7FJZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ7_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 4.110e-78
Identity = 135/168 (80.36%), Postives = 140/168 (83.33%), Query Frame = 1 
Query:    1 MDCLPELVVAKRKTISSAKMAKRLRRFVNENQRPDAPEEGDGDVVDDDVRNATKPAASGELLCRIPEETLFQLQQIYEALEGASGVKSASSAPSLTDLIAASAGNSGEAEPESGGNETSVVTPEKTSKQKRARGDEDPATASKANXXXXXXXXXXXXXXXXXRKSNAT 504
            MDCLPELVVAKRKTISSAKMAKRLRRFV ENQRPDAPE GDGDV DDDV+ ATKPAASGELLCRIPEETLFQLQQIYEALEGASGVK ASSAPSLTDLIAASAG+ GEAEP SGG E SVVTPEKT+KQKR RG E+PATASKA+                 RKSNAT
Sbjct:    1 MDCLPELVVAKRKTISSAKMAKRLRRFVGENQRPDAPEGGDGDVGDDDVQTATKPAASGELLCRIPEETLFQLQQIYEALEGASGVKPASSAPSLTDLIAASAGDGGEAEPMSGGTEASVVTPEKTTKQKRVRGGEEPATASKASGGSSIGTSPKIKKKKSRRKSNAT 168
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BLAST of mRNA_E-fasciculatus_F_contig1511.3624.1 vs. uniprot
Match: A0A6H5JU48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU48_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 2.830e-62
Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:    1 MDCLPELVVAKRKTISSAKMAKRLRRFVNENQRPDAPEEGDGDVVDDDVRNATKPAASGELLCRIPEETLFQLQQIYEALEGASGVKSASSAPSLTDLIAASAGNSGEAEPESGGNETSVVTP 369
            MDCLPELVVAKRKTISS+KMAKRLRRFV ENQRPDAPE GDGDV DDDV NATKPAA+GELLCRIPEETLFQLQQIYEALEGASGVK AS APSLTD+IAASAG++GE EP SGGNE SVVTP
Sbjct:    1 MDCLPELVVAKRKTISSSKMAKRLRRFVGENQRPDAPEGGDGDVGDDDVTNATKPAATGELLCRIPEETLFQLQQIYEALEGASGVKPASRAPSLTDIIAASAGDNGETEP-SGGNEASVVTP 122
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BLAST of mRNA_E-fasciculatus_F_contig1511.3624.1 vs. uniprot
Match: A0A835YPI2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPI2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.020e-5
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 MDCLPELVVAKRKTISSAKMAKRLRRFVNENQRPDAPEEGDGDVVDDDVRNATKPAASGELLCRIPEETLFQLQQIYEALEGASGV 258
            M+  PE+ V   + +S  K AK+LRRF+ E++    PE  DG+   DD           EL  R+PE+ LFQ+QQIY+A+ GA+ V
Sbjct:    1 MNPFPEIRVLSSRPLSEHKAAKKLRRFLKEHK---PPEHADGE---DD--------GGEELYARVPEDKLFQIQQIYDAITGAAPV 72
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1511.3624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJZ7_ECTSI4.110e-7880.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU48_9PHAE2.830e-6288.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPI2_9STRA2.020e-540.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1511contigE-fasciculatus_F_contig1511:8190..11550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003050.1
Exons3
Model size507
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1511.3624.1prot_E-fasciculatus_F_contig1511.3624.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1511 8190..11550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.7291987-CDS-E-fasciculatus_F_contig1511:8189..83121622927991.7291987-CDS-E-fasciculatus_F_contig1511:8189..8312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 8190..8312 -
1695995780.808908-CDS-E-fasciculatus_F_contig1511:8189..83121695995780.808908-CDS-E-fasciculatus_F_contig1511:8189..8312Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 8190..8312 -
1622927991.7387896-CDS-E-fasciculatus_F_contig1511:9905..102121622927991.7387896-CDS-E-fasciculatus_F_contig1511:9905..10212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 9906..10212 -
1695995780.8176036-CDS-E-fasciculatus_F_contig1511:9905..102121695995780.8176036-CDS-E-fasciculatus_F_contig1511:9905..10212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 9906..10212 -
1622927992.5307517-CDS-E-fasciculatus_F_contig1511:11473..115501622927992.5307517-CDS-E-fasciculatus_F_contig1511:11473..11550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 11474..11550 -
1695995780.8261466-CDS-E-fasciculatus_F_contig1511:11473..115501695995780.8261466-CDS-E-fasciculatus_F_contig1511:11473..11550Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1511 11474..11550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1511.3624.1

>prot_E-fasciculatus_F_contig1511.3624.1 ID=prot_E-fasciculatus_F_contig1511.3624.1|Name=mRNA_E-fasciculatus_F_contig1511.3624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
MDCLPELVVAKRKTISSAKMAKRLRRFVNENQRPDAPEEGDGDVVDDDVR
NATKPAASGELLCRIPEETLFQLQQIYEALEGASGVKSASSAPSLTDLIA
ASAGNSGEAEPESGGNETSVVTPEKTSKQKRARGDEDPATASKANSSGGG
TSSKMMKKKKARRKSNAT*
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mRNA from alignment at E-fasciculatus_F_contig1511:8190..11550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1511.3624.1 ID=mRNA_E-fasciculatus_F_contig1511.3624.1|Name=mRNA_E-fasciculatus_F_contig1511.3624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3361bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1511:8190..11550- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACTGCTTACCTGAGCTGGTCGTGGCGAAGAGGAAAACGATATCCAG
TGCCAAGATGGCCAAACGATTACGAAGGTACAGAGACCTTACATGTTAGG
CGTTGGTGGGTGTGGTACAGCAGTAGATGCCGTTTTTTGCATCAGTGGAT
GTGGGCCGCTCGCAGGCCCTCTCTCTACACATTCAGCTCCTGTACCGTAA
ACATGAGTTCCCCGACGTAGGTTGCTACCTCCTGGTCTAGGAGTCGTGCC
TCCTTCTTTGCGCGTGCAGGCTCTGCAAGCAAACAACAATTCTCTCCTAC
TTGAAAATCGATGCTGAAACCACGGCTGCTGGGTCGTTCCATGGCCAGCC
GCCCACCCGCCACCCCAGATGTAGATCGTGTTGCAAAGCTTCGCAGCTTG
TAACACTGGTGGCGAATGCCCGAGAATCCACGTGGTGCCCTAAACTCCCC
TGAAGAAAACGTCCATGGGCTGGGTGGCGTCTCCTGTAGCGGTTGTCACC
GTTTTCAGTCCTTTCTGATCAGCATCGGATGAGCACAGCCAGCCATCGAA
TTCTGGACATCAGCAGGTGGTGTGCCGTAAACTCATGACGTGAGATACCA
TACCCCCTGGACCGAGTTTCAAAGCTCGACTTGCCCACGAGGAAGATGAT
GCCAAGATCAAATGACATTTTTTCGGATTAGGTGTCGATGAGACGGTCCT
AATGCCGCCATATCGGCACCGTGACTCTTTCCACTGCTCTGGAGTAATCG
AGCTTTGAAATAGTCGGGTCCACGGGGTGTGGGATCTCTCTTGTGTCCCC
TACGGTACAGCAGCCTGCTTCTGTGTTGAGCGCACCTTCGTGGGCATACC
CTTACCCTGGATACGCCGATGTACATGTGTAGCGTCGGAGCATAGCGTGA
TTCAAACTTCGCACACCCGCATTGAATGCCGGGTAGTGTTCTCTCGTTAA
GCCTTGCGGCTACATAGTGGTCCACAAGAGCAGCTCCCTGCTGCTGTGAG
GTGTAGATTCGTGATCAGTCTACTGTCGTTTTGTCCAAAAGCTCGGGTGC
ACTTACACCAACAACCGAATCCCATGTTTTTTGTTTTCACAACACATTTT
TGCGACCCGGGCACACACCACAAATACCCCCTGCATTTCGAGCACAGCCG
GCAAGTGACTCGTGGTGTTGTGTAGCTGCTTTCGGACACGTGTCCGTCTT
CGGATGATCGTGAATTTACCCCCCCCCTGCAGCAGTGCAAGCGCAAAGCC
GACCCCGTGAGCTTATCAACTTATGCCTGTTCGGTTGTCCCATCTCTGTT
ACCAACAACGTACTACCGCACACCACACACAAAGGCAGGTTTGTTAATGA
AAACCAGCGGCCGGACGCCCCGGAGGAGGGGGATGGCGACGTGGTGGATG
ACGATGTCCGAAACGCAACCAAACCCGCCGCGTCGGGAGAACTCCTCTGC
CGCATCCCTGAAGAGACCCTGTTCCAGCTCCAGCAGATCTACGAGGCCCT
CGAGGGTGCCAGCGGCGTCAAGTCGGCGTCGAGTGCGCCAAGCTTGACGG
ATCTCATTGCTGCAAGTGCTGGTAACAGCGGTGAAGCAGAGCCGGAGAGC
GGAGGGAACGAGACTTCTGTGGTGACTCCGGAGAAGACGTCCAAGGTTAG
TTTGTGCGCGTTTTTTCGGGCGGGTGCTTGAGTCGTTCGGGTTTTGCTGG
TGGTGAGCATGCCTCGTGCATGAAGCACGAGGTCTTGAGGGTCTGCAACG
ACCACTGTTGTCGAAAAGATTATTGCCTTCCCGGGATGAGGTTGCCGACG
CCTTAAAAAAAGTCGCCCCACACGATTGGCCGGTGTTCTTGTATTTTCAG
AATCACAGAAAGAGTACAGTTCGAGGCGTTACCATTCATGTCCCAACAAC
CGAATTTTTGTGGAAGGCGAAGCCCATAGCTGCATGTATTCGGGCGGAAA
CATGTGTTTTTGCTCAAGTGTGTCTCGCCTCCCGGGATATGCTGCCCTCT
ACGTCGCCCGGTTAACACTAGAGTCCAGCAGGCTGCTCAATGCTCCACCT
AGGCAACCACTGGCCTCCTTTCATAGCTTTCGTCCCTGTCTGATGCCGTA
TCAGGCGCGGTAGTGCGTCCCCCATTCGATATGCGGTAGGGCGATGCTCG
AAGTTAAGAACTCATGCTGCTTGATTACGAGTTTCTGATACTTTTGCCGC
GTTCGCTGCTGTCACTTGGCATCATTTACCTGCGAGCATGAACATCATCA
TTTACCTGCGAGCATGAAAATATCATGGTGCTGTTTGTAGCCCTCTCGTT
TTTTTTGCATTTTGTTGATTGGAATGCAAGTGGTGAAACGGTGCGCAGCC
ATCGACCACGTGAATTTCTCAAAAGGGAAACCCAAACCTTGTCAAATTCT
CTTCATTCCTGACCATGAGTGAAAGAAGCCGGTGCTTTGGGATAGCAATT
AACCTTATGTTTTATGGTTCGGACACTAGGCGCAGATTCAAAATCACCGC
AGACCGTGGCGCAGCAATGCGCCGCAACTTGCAACGATCCCGTGGGATCT
GCTCTCCGTTCTGGCCCACATTTCTAGTCTGTGGACTCCCGTAGCTGACG
CGATGTACCACATCCCCTGGAGTGACTTTCTTTGCTCGATTTCTCTCCAG
CAGAAAGAGTGGCCGTTGCCGAAAACGGCGGCGTTGAAGCCATGTCGTCG
GTAGCTTTCCGAAGACGCATGGTGTCGTTGATGCGTCCTCTCTCATCGTG
GAGTAATCAAGCTTTGAAAACCCGTCCGGAGGGTGGCATCTTGTGTTTAC
CCGCGGTATTTCCCGGTGTAATCATTATTCAGCTATGCCCGACCTTGACC
CCCCGACTCCCTTTCTTTGCTTCGATGGAATTCGTAGGCATTGGTTCTGG
TAAGCGTGTTGGGTGCGCCGTTATTTGGGCGGTATATGCGTTGCTGTGTA
GCTTGAGAGGAGTTTTGTTGGAGGCAGGCTCCCGCCGCTTGCTCCCCCTT
CGAGGACATGGGGAACTTGGTGTCATCAGTTTTCTATCTCTCGCATCTGT
TCACACCCGACACACACGTGCTGATGCAAAAATGCTGTCTATCCCGATGC
CGCCATATTGGCGGACGCCACGGCCAGCAGATGAGAGGCTTGCCAACTCC
CGTTGATCATTGACACCACTCCACCACGCACTTTTTTGGTCTGGTGTTGA
CCCACCGCTGTCGTTTTTGTCACTGATCACGATGCCAGCAGAAGAGAGCA
CGAGGGGACGAGGATCCCGCCACGGCCTCCAAGGCTAACAGCAGCGGCGG
AGGGACGAGCTCGAAGATGATGAAGAAAAAGAAGGCCAGAAGAAAGAGCA
ACGCGACATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1511:8190..11550-

>mRNA_E-fasciculatus_F_contig1511.3624.1 ID=mRNA_E-fasciculatus_F_contig1511.3624.1|Name=mRNA_E-fasciculatus_F_contig1511.3624.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1511:8190..11550- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACTGCTTACCTGAGCTGGTCGTGGCGAAGAGGAAAACGATATCCAG
TGCCAAGATGGCCAAACGATTACGAAGATGGACTGCTTACCTGAGCTGGT
CGTGGCGAAGAGGAAAACGATATCCAGTGCCAAGATGGCCAAACGATTAC
GAAGGTTTGTTAATGAAAACCAGCGGCCGGACGCCCCGGAGGAGGGGGAT
GGCGACGTGGTGGATGACGATGTCCGAAACGCAACCAAACCCGCCGCGTC
GGGAGAACTCCTCTGCCGCATCCCTGAAGAGACCCTGTTCCAGCTCCAGC
AGATCTACGAGGCCCTCGAGGGTGCCAGCGGCGTCAAGTCGGCGTCGAGT
GCGCCAAGCTTGACGGATCTCATTGCTGCAAGTGCTGGTAACAGCGGTGA
AGCAGAGCCGGAGAGCGGAGGGAACGAGACTTCTGTGGTGACTCCGGAGA
AGACGTCCAAGGTTTGTTAATGAAAACCAGCGGCCGGACGCCCCGGAGGA
GGGGGATGGCGACGTGGTGGATGACGATGTCCGAAACGCAACCAAACCCG
CCGCGTCGGGAGAACTCCTCTGCCGCATCCCTGAAGAGACCCTGTTCCAG
CTCCAGCAGATCTACGAGGCCCTCGAGGGTGCCAGCGGCGTCAAGTCGGC
GTCGAGTGCGCCAAGCTTGACGGATCTCATTGCTGCAAGTGCTGGTAACA
GCGGTGAAGCAGAGCCGGAGAGCGGAGGGAACGAGACTTCTGTGGTGACT
CCGGAGAAGACGTCCAAGCAGAAGAGAGCACGAGGGGACGAGGATCCCGC
CACGGCCTCCAAGGCTAACAGCAGCGGCGGAGGGACGAGCTCGAAGATGA
TGAAGAAAAAGAAGGCCAGAAGAAAGAGCAACGCGACATGACAGAAGAGA
GCACGAGGGGACGAGGATCCCGCCACGGCCTCCAAGGCTAACAGCAGCGG
CGGAGGGACGAGCTCGAAGATGATGAAGAAAAAGAAGGCCAGAAGAAAGA
GCAACGCGACATGA
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