prot_E-fasciculatus_F_contig15107.3621.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-fasciculatus_F_contig15107.3621.1
Unique Name	prot_E-fasciculatus_F_contig15107.3621.1
Type	polypeptide
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length	117

Homology

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 5.040e-72
Identity = 105/116 (90.52%), Postives = 110/116 (94.83%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSILDFLH 116
            MGPDYIGPAVDHFQEISARFPEFW+FSLL +ALIEYNTITKAYAEPSF TGEGGLR++YSPGDLGFDPLNLKP DQ  LETMQTKELNNGRLAMIGIAG LVQELVNPT+ILDFLH
Sbjct:   63 MGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.080e-71
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSILDFLH 116
            MGPDYIGPAVDHFQEISARFPEFW+FSLL M LIEYNTITKAYAEPSF TGEGGLR+DYS GDLGFDPLNLKPKDQA LETMQTKELNNGRLAMIGIAGMLVQELVN  +ILDFLH
Sbjct:    1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINILDFLH 116

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.980e-65
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEISA+FPEFW+FSLL MA IEYNTITKAYAEPS  TGEGGLR++YSPGDLGFDPLNLKPKDQA LE MQTKELNNGRLAMIGIAGMLVQELVNP  IL
Sbjct:  109 MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 2.220e-58
Identity = 89/112 (79.46%), Postives = 97/112 (86.61%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEISA+FPEFW+FSLL MA +EYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:   84 MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.310e-58
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEISA++PEFW FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP+D+A L+ M+TKELNNGRLAMIGIAGMLVQEL+NP  IL
Sbjct:  108 MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.410e-58
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEI+A+FP+FW++SLL MA IEYNTI KAYAEPS  TGEGGLR++YSPGDLGFDP  +KPKDQA LE MQ KELNNGRLAMIGI GMLVQELVN   IL
Sbjct:  106 MGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.790e-56
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEISA+FPEFW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:  280 MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.600e-55
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPE------------------FWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MGPDYIGPAVDHFQEISA+FPE                  FW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:    1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 130

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.080e-52
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 0

Query:    1 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MG D+IGPA+ HFQEISA+FPEFW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP  +A L+ M+TKELNNGRLAMIGIAGML QELVN   IL
Sbjct:  108 MGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

[Close]

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5JG14_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.540e-44
Identity = 74/82 (90.24%), Postives = 75/82 (91.46%), Query Frame = 0

Query:   31 MALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 112
            MA IEYNTITKAYAEPS  TGEGGLRE+YSPGDLGFDPLNLKPKDQA LE MQTKELNNGRLAMIGIAGMLVQELVNP  IL
Sbjct:    1 MAFIEYNTITKAYAEPSPVTGEGGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 82

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q7_ECTSI	5.040e-72	90.52	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5L7D2_9PHAE	1.080e-71	91.38	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S1_ECTSI	4.980e-65	89.29	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	2.220e-58	79.46	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	3.310e-58	79.46	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	4.410e-58	80.36	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	2.790e-56	80.36	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JVY1_9PHAE	3.600e-55	69.23	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q9_ECTSI	3.080e-52	75.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5JG14_9PHAE	1.540e-44	90.24	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 21..104 e-value: 1.0E-20 score: 74.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 2..116 e-value: 1.0E-21 score: 79.7
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 8..107
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 15..115
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 8..107

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig15107	contig	E-fasciculatus_F_contig15107:1591..2701 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig15107.3621.1	mRNA_E-fasciculatus_F_contig15107.3621.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	mRNA	E-fasciculatus_F_contig15107 1591..2716 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-fasciculatus_F_contig15107.3621.1 ID=prot_E-fasciculatus_F_contig15107.3621.1|Name=mRNA_E-fasciculatus_F_contig15107.3621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFAT
GEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGM
LVQELVNPTSILDFLH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind