mRNA_E-fasciculatus_F_contig15107.3621.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15107.3621.1
Unique NamemRNA_E-fasciculatus_F_contig15107.3621.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 1.170e-76
Identity = 110/121 (90.91%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSILDFLH 363
            YHPFFMGPDYIGPAVDHFQEISARFPEFW+FSLL +ALIEYNTITKAYAEPSF TGEGGLR++YSPGDLGFDPLNLKP DQ  LETMQTKELNNGRLAMIGIAG LVQELVNPT+ILDFLH
Sbjct:   58 YHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.890e-71
Identity = 106/116 (91.38%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:   16 MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSILDFLH 363
            MGPDYIGPAVDHFQEISARFPEFW+FSLL M LIEYNTITKAYAEPSF TGEGGLR+DYS GDLGFDPLNLKPKDQA LETMQTKELNNGRLAMIGIAGMLVQELVN  +ILDFLH
Sbjct:    1 MGPDYIGPAVDHFQEISARFPEFWAFSLLGMVLIEYNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINILDFLH 116
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 9.690e-69
Identity = 104/117 (88.89%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHP FMGPDYIGPAVDHFQEISA+FPEFW+FSLL MA IEYNTITKAYAEPS  TGEGGLR++YSPGDLGFDPLNLKPKDQA LE MQTKELNNGRLAMIGIAGMLVQELVNP  IL
Sbjct:  104 YHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 5.260e-63
Identity = 94/117 (80.34%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHPFFMGPDYIGPAVDHFQEISA+FPEFW+FSLL MA +EYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:   79 YHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.060e-62
Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHPFFMGPDYIGPAVDHFQEI+A+FP+FW++SLL MA IEYNTI KAYAEPS  TGEGGLR++YSPGDLGFDP  +KPKDQA LE MQ KELNNGRLAMIGI GMLVQELVN   IL
Sbjct:  101 YHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.470e-62
Identity = 93/117 (79.49%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHP FMGPDYIGPAVDHFQEISA++PEFW FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP+D+A L+ M+TKELNNGRLAMIGIAGMLVQEL+NP  IL
Sbjct:  103 YHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 7.710e-61
Identity = 95/117 (81.20%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHPFFMGPDYIGPAVDHFQEISA+FPEFW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:  275 YHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 6.090e-56
Identity = 88/117 (75.21%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            YHP FMG D+IGPA+ HFQEISA+FPEFW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP  +A L+ M+TKELNNGRLAMIGIAGML QELVN   IL
Sbjct:  103 YHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.260e-55
Identity = 90/130 (69.23%), Postives = 97/130 (74.62%), Query Frame = 1 
Query:   16 MGPDYIGPAVDHFQEISARFPE------------------FWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSIL 351
            MGPDYIGPAVDHFQEISA+FPE                  FW+FSLL MA IEYNTI  A+  PS  TGEGGL+EDY PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVNP  IL
Sbjct:    1 MGPDYIGPAVDHFQEISAQFPEPFPLCTFLPAIPVSPQPQFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.640e-46
Identity = 73/116 (62.93%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 YHPFFMGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFATGEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGMLVQELVNPTSI 348
            +HP F+GPDYIGPA+ HF+EI+ARFP+FW+ +LL +A +EY  I   +AE    TGEGG+R DY PGDLGFDPL L P+D+  L  M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:  154 FHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15107.3621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q7_ECTSI1.170e-7690.91Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5L7D2_9PHAE1.890e-7191.38LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S1_ECTSI9.690e-6988.89Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI5.260e-6380.34Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.060e-6281.20Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI6.470e-6279.49Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE7.710e-6181.20LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q9_ECTSI6.090e-5675.21Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A6H5JVY1_9PHAE6.260e-5569.23LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G5B4_ECTSI5.640e-4662.93Light harvesting complex protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15107contigE-fasciculatus_F_contig15107:1591..2716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue7.2e-56
Seed eggNOG ortholog2880.D7G7Q7
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-06_000730.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15107.3621.1prot_E-fasciculatus_F_contig15107.3621.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15107 1591..2701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.571014-CDS-E-fasciculatus_F_contig15107:1590..18751622927991.571014-CDS-E-fasciculatus_F_contig15107:1590..1875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 1591..1875 -
1695995780.735134-CDS-E-fasciculatus_F_contig15107:1590..18751695995780.735134-CDS-E-fasciculatus_F_contig15107:1590..1875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 1591..1875 -
1622927991.5826461-CDS-E-fasciculatus_F_contig15107:2635..27011622927991.5826461-CDS-E-fasciculatus_F_contig15107:2635..2701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 2636..2701 -
1695995780.745478-CDS-E-fasciculatus_F_contig15107:2635..27011695995780.745478-CDS-E-fasciculatus_F_contig15107:2635..2701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15107 2636..2701 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.6012344-UTR-E-fasciculatus_F_contig15107:2701..27161622927991.6012344-UTR-E-fasciculatus_F_contig15107:2701..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 2702..2716 -
1695995780.753799-UTR-E-fasciculatus_F_contig15107:2701..27161695995780.753799-UTR-E-fasciculatus_F_contig15107:2701..2716Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15107 2702..2716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15107.3621.1

>prot_E-fasciculatus_F_contig15107.3621.1 ID=prot_E-fasciculatus_F_contig15107.3621.1|Name=mRNA_E-fasciculatus_F_contig15107.3621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
MGPDYIGPAVDHFQEISARFPEFWSFSLLIMALIEYNTITKAYAEPSFAT
GEGGLREDYSPGDLGFDPLNLKPKDQATLETMQTKELNNGRLAMIGIAGM
LVQELVNPTSILDFLH*
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mRNA from alignment at E-fasciculatus_F_contig15107:1591..2716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15107.3621.1 ID=mRNA_E-fasciculatus_F_contig15107.3621.1|Name=mRNA_E-fasciculatus_F_contig15107.3621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1126bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15107:1591..2716- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCACCCGTTCTTCATGGGTCCCGACTACATCGGACCCGCCGTGGACCA
CTTCCAGGAGATCAGCGCACGGTTCCCCGAGGTATGAGGAAAGGAGTACA
ACAAATGCGGCAAATCGTTTCCACCCAGCCAGCCTCTTTCGTTCAAAACG
CATCAGCGAGAAGGGAGACTTGGCAGTGCAACTGCTGTCCCTCAGATCGA
CTACCTTCTCCACGGCAGTCACGCTGGTAGTGCTTGAGCTCACAGACGTG
CACATGATCGTAGTCGGTGAGATGTACACTCTCGACAAATCACGAACATG
AACATGGTATGCAGGCATGCAGGCGAGAGCAAGCGATCAGGCATTTATTT
CCGCGCCTGACCCACTGATGAATGTGTTGTCGACATCGAAAGGACAGATT
AGTCCGCCAGCCAGCGACGGCTGTGTGGAAAAACGGCACGTCGTTGCGAA
GAACGAAAAATTACATTTTGGTGCGTTGTTGAAACGCGATAGTTTCACCT
TAGACTATATGATGCCCAACGATGTTGTTTCTGCGTGGTACTGGCACCAG
GAAGGCAGAGTTGTATACAGGAATGTTGCGTGAAATAGATGGCGCGGTAG
TGTTTTCTCTTTCATGTCATAGGCAGACAGCAGTAGCGTGCCCCAGAATA
CCTCCTTTGTTTTTCAATGCTCATTTCGCGATCTTATTTGAGCCATGTCT
GCCAGTCACCGTAAATGAGACCCTCGCCGTTGTGGGCGAGCCTCCATGCA
TGCGGGGGAGATTTCCCCGCCCTCGCCCCGTCGCCCTCGCCCCGTGTCCT
ACACACTTTCTAACGCTAGCCCGCAATCGACCCCACCACAGTTCTGGTCG
TTCTCCCTCCTCATTATGGCGCTCATCGAGTACAACACCATCACCAAGGC
TTACGCTGAGCCGAGCTTCGCGACCGGCGAGGGCGGCCTGAGGGAAGACT
ACAGCCCGGGAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCTAAGGAC
CAGGCGACCCTGGAGACGATGCAGACCAAAGAGCTCAACAACGGGCGCCT
AGCCATGATCGGCATCGCCGGCATGCTGGTGCAGGAACTGGTCAACCCGA
CCAGTATTCTCGATTTCCTTCACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15107:1591..2716-

>mRNA_E-fasciculatus_F_contig15107.3621.1 ID=mRNA_E-fasciculatus_F_contig15107.3621.1|Name=mRNA_E-fasciculatus_F_contig15107.3621.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15107:1591..2716- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCCCGACTACATCGGACCCGCCGTGGACCACTTCCAGGAGATCAG
CGCACGGTTCCCCGAGATGGGTCCCGACTACATCGGACCCGCCGTGGACC
ACTTCCAGGAGATCAGCGCACGGTTCCCCGAGTTCTGGTCGTTCTCCCTC
CTCATTATGGCGCTCATCGAGTACAACACCATCACCAAGGCTTACGCTGA
GCCGAGCTTCGCGACCGGCGAGGGCGGCCTGAGGGAAGACTACAGCCCGG
GAGACCTCGGCTTCGACCCCCTCAACCTCAAGCCTAAGGACCAGGCGACC
CTGGAGACGATGCAGACCAAAGAGCTCAACAACGGGCGCCTAGCCATGAT
CGGCATCGCCGGCATGCTGGTGCAGGAACTGGTCAACCCGACCAGTATTC
TCGATTTCCTTCACTGATTCTGGTCGTTCTCCCTCCTCATTATGGCGCTC
ATCGAGTACAACACCATCACCAAGGCTTACGCTGAGCCGAGCTTCGCGAC
CGGCGAGGGCGGCCTGAGGGAAGACTACAGCCCGGGAGACCTCGGCTTCG
ACCCCCTCAACCTCAAGCCTAAGGACCAGGCGACCCTGGAGACGATGCAG
ACCAAAGAGCTCAACAACGGGCGCCTAGCCATGATCGGCATCGCCGGCAT
GCTGGTGCAGGAACTGGTCAACCCGACCAGTATTCTCGATTTCCTTCACT
GA
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