mRNA_E-fasciculatus_F_contig15105.3619.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15105.3619.1
Unique NamemRNA_E-fasciculatus_F_contig15105.3619.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15105.3619.1 vs. uniprot
Match: D8LD64_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD64_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 4.550e-99
Identity = 274/344 (79.65%), Postives = 281/344 (81.69%), Query Frame = 1 
Query:    1 ASEVSPDGKIGFNTKFQAENAALRMALYEADKTNPTGANRLHQPKQDRGMEGGAAGAGSRLGKSPAGMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SLPQHLTSTATDSKVNVVSINGGSRVGGXXXXXXXXXXXXXXXXXXXXXX--TRMIAPAGIGAPFMSGGGLGVLASLTGGGRDGTGTSQPSSGGRSLHPKSMSTFVSVPGGVAGTAAGRSTAPPHSQSASSYGPPGYRMDAAAGAGGRKLHREXXXXXXXXXXXXTAGGLDYAELMARASANAAMVRAR 1020
            ASEVSPDGKIGFNTKF+AENAALRMALYEADKT+ + +NRLHQPKQD  MEGGAAGAGSRLGKSP GMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SLPQHL+ST  D KVN  SING SRVGG                         RMIAPAGIGAPFMSGGGLGVLASLTGGGRDGTGTSQPSSGGRSLHPKSMSTFVSVPGG  G AAGRSTAPPH QS+SSYGPPGYR DAA GAGGRKL RE              GGLDYA +MARASANAAM   R
Sbjct:  106 ASEVSPDGKIGFNTKFRAENAALRMALYEADKTHGSSSNRLHQPKQD--MEGGAAGAGSRLGKSPTGMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPQHLSST--DGKVNGGSINGSSRVGGGTCSLLDGPGAAGAAGSGGVSGGGNRMIAPAGIGAPFMSGGGLGVLASLTGGGRDGTGTSQPSSGGRSLHPKSMSTFVSVPGGAVGAAAGRSTAPPHPQSSSSYGPPGYRTDAA-GAGGRKLDREERGEGGGP------GGLDYA-MMARASANAAMCYQR 437
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BLAST of mRNA_E-fasciculatus_F_contig15105.3619.1 vs. uniprot
Match: A0A6H5JZ57_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ57_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 7.100e-93
Identity = 273/345 (79.13%), Postives = 284/345 (82.32%), Query Frame = 1 
Query:    1 ASEVSPDGKIGFNTKFQAENAALRMALYEADKTNPTGANRLHQPKQDRGMEGGAAGAGSRLGKSPAGMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--LPQHLTSTATDSKVNVVSINGGSRVGGXXXXXXXXXXXXXXXXXXXXXXTRMIAPAGIGAPFMSGGGLGVLASLTGGGRDGTGTSQPSSGGRSLHPKSMSTFVSVPGGVAGTAAGRSTAPPHSQSASSYGPPGYRMDAAAGAGGRKLHREXXXXXXXXXXXXTAGGLDYAELMARASANAAMVRARSIQ 1029
            ASEVS DGKIGFNTKF+AENAALRMALYEADKT+ + +NRLHQPKQD  M+GGAAGAGSRLGKSP GMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS  LP+HL+ST  D KVN  S         X         XXXXXXX      RMIAPAG+GAPFMSGGGLGVLASLTGG RDGTGTSQPSSGGRSL+PKSMSTFVSVP GVAG AAGRST PPH QS+SSYGPP YR DAA GAGGRKL RE              GG DYAE+MARASANAAMVRARSIQ
Sbjct:   56 ASEVSMDGKIGFNTKFRAENAALRMALYEADKTHGSSSNRLHQPKQD--MDGGAAGAGSRLGKSPTGMSLSEHPMSGPVPSLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSNLPRHLSST--DGKVNGGSXXXXXXXXXXRLLDGPGAAXXXXXXXVSGGGNRMIAPAGMGAPFMSGGGLGVLASLTGGRRDGTGTSQPSSGGRSLNPKSMSTFVSVPSGVAGAAAGRSTVPPHPQSSSSYGPPEYRTDAA-GAGGRKLDREGEGGGP--------GGSDYAEMMARASANAAMVRARSIQ 387
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15105.3619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD64_ECTSI4.550e-9979.65BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZ57_9PHAE7.100e-9379.13BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15105contigE-fasciculatus_F_contig15105:1160..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper transcription factor
Ec32 orthologEc-11_000630.1
Exons2
Model size1116
Cds size1116
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927991.4233053-CDS-E-fasciculatus_F_contig15105:1159..12491622927991.4233053-CDS-E-fasciculatus_F_contig15105:1159..1249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15105 1160..1249 +
1695995780.682583-CDS-E-fasciculatus_F_contig15105:1159..12491695995780.682583-CDS-E-fasciculatus_F_contig15105:1159..1249Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15105 1160..1249 +
1622927991.4386308-CDS-E-fasciculatus_F_contig15105:2094..31201622927991.4386308-CDS-E-fasciculatus_F_contig15105:2094..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15105 2095..3120 +
1695995780.6904094-CDS-E-fasciculatus_F_contig15105:2094..31201695995780.6904094-CDS-E-fasciculatus_F_contig15105:2094..3120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15105 2095..3120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15105.3619.1prot_E-fasciculatus_F_contig15105.3619.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15105 1160..3120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15105.3619.1

>prot_E-fasciculatus_F_contig15105.3619.1 ID=prot_E-fasciculatus_F_contig15105.3619.1|Name=mRNA_E-fasciculatus_F_contig15105.3619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=372bp
ASEVSPDGKIGFNTKFQAENAALRMALYEADKTNPTGANRLHQPKQDRGM
EGGAAGAGSRLGKSPAGMSLSEHPMSGPVPSLAAAAAAVGNAQPSSSSSG
MSSSSHSLLASLPPPPLSGGGGGGGGGDKMSSSPTSSLHSSPSTSAASMM
MSSSLPQHLTSTATDSKVNVVSINGGSRVGGGSLLDGPGAAGAAGGGGVS
GGGTRMIAPAGIGAPFMSGGGLGVLASLTGGGRDGTGTSQPSSGGRSLHP
KSMSTFVSVPGGVAGTAAGRSTAPPHSQSASSYGPPGYRMDAAAGAGGRK
LHREEGGEGGGGGGGGTAGGLDYAELMARASANAAMVRARSIQQQQQQQQ
QQQQQQQQHSDSGGGGAGPGGG
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mRNA from alignment at E-fasciculatus_F_contig15105:1160..3120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15105.3619.1 ID=mRNA_E-fasciculatus_F_contig15105.3619.1|Name=mRNA_E-fasciculatus_F_contig15105.3619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1961bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15105:1160..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTCCGAGGTGTCGCCAGACGGGAAGATAGGCTTCAACACCAAGTTTCA
GGCGGAAAACGCGGCTCTTCGGATGGCGTTGTACGAGGCGGTAAGACTTT
TGTCCCTAAGCAGCCATTTTCTCGTCGAGGTGCAATGTTCATATAGCCGA
TCTAGATCCGACGTGCCCCGGTAGGCCAGAGAAGTACGGCGAGACACAAG
AGAGTTCCTTCCGTTGATGGCAAGCAGCGTCGGAATACCGTAAGAGTGCT
GGTGAACGCACAGAGTTGGTGTGCGATCGATTGTTAGAGGTCCATTTCTC
TTTCTCCACAACCGAGAGAGACTGCCAGTGCCGGAAAGGGTGGCGGTGGC
CTTGGAGAGATGTTACCTCGCCGAGAGCTCGTGTCGTCGGGTGTTGTGCG
TTCCGGTTGTTGAGCCGTCGATCTTCCAAAATCGATCGATCGCACACCTC
TGCCTTCGCCCGCGCTGTTACGGTACTTCCAAGCCGAAAGACCATGTCTT
CGGCGCTCCTCGTGCCTGCGTAGGTCTTGATTTGCCTTCGATGTATAAAA
AAAGGCGATTTTATGTGCTATTGAAGGCTCCAAGTCTCGCTTCGTGTTCA
AGGCTCTCTTTCGCGTGGTTTATTTTGCTCGCAATTTCGACTGCATAGCT
ACCTACCAGTGACGGCGGTGTGCCCAAAACGGCGGCGTTGGAACGATTTT
TGTCGAGAGAATGAGGCTTCCGAAACGTCTCCTTTAAAAAAAAAAAAAAA
AAAAAAATCGGCCCAGGGAGTGGGGTATCTTACGCATGCGACGGTAGTAG
ATGAAATGAAGTAGGTGTTAATCCAGCGATTCCCCGTCGGATCTTCAGTC
AGCTGGTCTCGAGCACGAAGCAGCACCTGTGTCATTATGTGCCCCGTCCT
TACCTCTTGCTCCAACGCGCGTTTCTTTGTGCTAGGATAAGACGAACCCC
ACGGGGGCAAATCGGCTGCACCAGCCGAAACAAGACAGGGGTATGGAAGG
AGGCGCAGCAGGCGCGGGCTCGCGCTTAGGCAAGAGCCCCGCCGGCATGT
CTCTATCGGAACACCCCATGTCTGGACCCGTCCCTTCTCTGGCCGCGGCC
GCGGCCGCTGTCGGCAACGCTCAGCCTTCTTCCTCTTCCTCCGGGATGTC
GTCTTCGTCGCACTCCTTGCTGGCGTCTCTCCCGCCGCCGCCACTGTCTG
GCGGCGGCGGCGGCGGCGGCGGCGGCGACAAGATGTCGTCGTCGCCGACG
TCCTCGCTCCACAGCTCTCCTTCCACGTCCGCCGCTTCCATGATGATGTC
GTCCTCCCTCCCGCAGCACCTGACGTCTACCGCTACGGACAGCAAGGTTA
ACGTCGTCAGCATCAACGGCGGCAGCCGGGTAGGTGGTGGGAGCTTGCTG
GATGGGCCGGGGGCGGCGGGGGCGGCCGGAGGCGGTGGTGTGTCCGGCGG
CGGGACTCGCATGATCGCGCCCGCCGGCATCGGCGCTCCCTTCATGAGCG
GCGGGGGCCTCGGCGTACTGGCGAGCCTAACGGGGGGAGGGAGGGACGGC
ACCGGTACGTCGCAGCCGAGCAGCGGCGGGAGATCCTTGCACCCCAAGTC
TATGTCCACTTTTGTCAGTGTCCCCGGAGGCGTTGCAGGTACGGCGGCGG
GAAGGTCGACCGCACCCCCCCACTCCCAGTCGGCGTCGAGCTACGGGCCC
CCCGGGTACAGGATGGATGCCGCCGCCGGTGCCGGCGGTCGGAAGTTGCA
TCGAGAAGAAGGAGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAACGGCGG
GCGGATTGGACTACGCGGAGCTGATGGCGAGAGCGTCGGCGAACGCAGCC
ATGGTGAGGGCGCGGTCGATCCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCACAGCGATAGCGGTGGTGGTGGTGCCGGTC
CCGGCGGTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15105:1160..3120+

>mRNA_E-fasciculatus_F_contig15105.3619.1 ID=mRNA_E-fasciculatus_F_contig15105.3619.1|Name=mRNA_E-fasciculatus_F_contig15105.3619.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2232bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15105:1160..3120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTTCCGAGGTGTCGCCAGACGGGAAGATAGGCTTCAACACCAAGTTTCA
GGCGGAAAACGCGGCTCTTCGGATGGCGTTGTACGAGGCGGCTTCCGAGG
TGTCGCCAGACGGGAAGATAGGCTTCAACACCAAGTTTCAGGCGGAAAAC
GCGGCTCTTCGGATGGCGTTGTACGAGGCGGATAAGACGAACCCCACGGG
GGCAAATCGGCTGCACCAGCCGAAACAAGACAGGGGTATGGAAGGAGGCG
CAGCAGGCGCGGGCTCGCGCTTAGGCAAGAGCCCCGCCGGCATGTCTCTA
TCGGAACACCCCATGTCTGGACCCGTCCCTTCTCTGGCCGCGGCCGCGGC
CGCTGTCGGCAACGCTCAGCCTTCTTCCTCTTCCTCCGGGATGTCGTCTT
CGTCGCACTCCTTGCTGGCGTCTCTCCCGCCGCCGCCACTGTCTGGCGGC
GGCGGCGGCGGCGGCGGCGGCGACAAGATGTCGTCGTCGCCGACGTCCTC
GCTCCACAGCTCTCCTTCCACGTCCGCCGCTTCCATGATGATGTCGTCCT
CCCTCCCGCAGCACCTGACGTCTACCGCTACGGACAGCAAGGTTAACGTC
GTCAGCATCAACGGCGGCAGCCGGGTAGGTGGTGGGAGCTTGCTGGATGG
GCCGGGGGCGGCGGGGGCGGCCGGAGGCGGTGGTGTGTCCGGCGGCGGGA
CTCGCATGATCGCGCCCGCCGGCATCGGCGCTCCCTTCATGAGCGGCGGG
GGCCTCGGCGTACTGGCGAGCCTAACGGGGGGAGGGAGGGACGGCACCGG
TACGTCGCAGCCGAGCAGCGGCGGGAGATCCTTGCACCCCAAGTCTATGT
CCACTTTTGTCAGTGTCCCCGGAGGCGTTGCAGGTACGGCGGCGGGAAGG
TCGACCGCACCCCCCCACTCCCAGTCGGCGTCGAGCTACGGGCCCCCCGG
GTACAGGATGGATGCCGCCGCCGGTGCCGGCGGTCGGAAGTTGCATCGAG
AAGAAGGAGGAGAGGGAGGAGGAGGAGGAGGAGGAGGAACGGCGGGCGGA
TTGGACTACGCGGAGCTGATGGCGAGAGCGTCGGCGAACGCAGCCATGGT
GAGGGCGCGGTCGATCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACAGCGATAGCGGTGGTGGTGGTGCCGGTCCCGGC
GGTGGCGATAAGACGAACCCCACGGGGGCAAATCGGCTGCACCAGCCGAA
ACAAGACAGGGGTATGGAAGGAGGCGCAGCAGGCGCGGGCTCGCGCTTAG
GCAAGAGCCCCGCCGGCATGTCTCTATCGGAACACCCCATGTCTGGACCC
GTCCCTTCTCTGGCCGCGGCCGCGGCCGCTGTCGGCAACGCTCAGCCTTC
TTCCTCTTCCTCCGGGATGTCGTCTTCGTCGCACTCCTTGCTGGCGTCTC
TCCCGCCGCCGCCACTGTCTGGCGGCGGCGGCGGCGGCGGCGGCGGCGAC
AAGATGTCGTCGTCGCCGACGTCCTCGCTCCACAGCTCTCCTTCCACGTC
CGCCGCTTCCATGATGATGTCGTCCTCCCTCCCGCAGCACCTGACGTCTA
CCGCTACGGACAGCAAGGTTAACGTCGTCAGCATCAACGGCGGCAGCCGG
GTAGGTGGTGGGAGCTTGCTGGATGGGCCGGGGGCGGCGGGGGCGGCCGG
AGGCGGTGGTGTGTCCGGCGGCGGGACTCGCATGATCGCGCCCGCCGGCA
TCGGCGCTCCCTTCATGAGCGGCGGGGGCCTCGGCGTACTGGCGAGCCTA
ACGGGGGGAGGGAGGGACGGCACCGGTACGTCGCAGCCGAGCAGCGGCGG
GAGATCCTTGCACCCCAAGTCTATGTCCACTTTTGTCAGTGTCCCCGGAG
GCGTTGCAGGTACGGCGGCGGGAAGGTCGACCGCACCCCCCCACTCCCAG
TCGGCGTCGAGCTACGGGCCCCCCGGGTACAGGATGGATGCCGCCGCCGG
TGCCGGCGGTCGGAAGTTGCATCGAGAAGAAGGAGGAGAGGGAGGAGGAG
GAGGAGGAGGAGGAACGGCGGGCGGATTGGACTACGCGGAGCTGATGGCG
AGAGCGTCGGCGAACGCAGCCATGGTGAGGGCGCGGTCGATCCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAGCGATA
GCGGTGGTGGTGGTGCCGGTCCCGGCGGTGGC
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