mRNA_E-fasciculatus_F_contig151.3613.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig151.3613.1
Unique NamemRNA_E-fasciculatus_F_contig151.3613.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig151.3613.1 vs. uniprot
Match: D7FT70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT70_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 4.110e-46
Identity = 93/105 (88.57%), Postives = 96/105 (91.43%), Query Frame = 2 
Query:  317 MALAKGQSLASLQKEKAAAPGSAAAPAASAAADTPGSVINLAGDDGMPPATAAAVPQGQAAVAGRSAGVSPAMASASGAGAAPPPVAARPRGGKGLNYLQQRAEP 631
            MALAKGQSLASLQKEKAAAPGS  APA +AAAD PGSVINLAGDDG+PPA AAAVPQGQA VAGR+AGVSPAMA ASG GAAPPPVA RPRGGKGLNYLQQRAEP
Sbjct:    1 MALAKGQSLASLQKEKAAAPGSTTAPATNAAADAPGSVINLAGDDGIPPAAAAAVPQGQATVAGRAAGVSPAMAGASGGGAAPPPVATRPRGGKGLNYLQQRAEP 105
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig151.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT70_ECTSI4.110e-4688.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig151contigE-fasciculatus_F_contig151:4197..6874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003390.1
Exons5
Model size699
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig151.3613.1prot_E-fasciculatus_F_contig151.3613.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig151 4197..5556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927990.3198047-CDS-E-fasciculatus_F_contig151:4196..42621622927990.3198047-CDS-E-fasciculatus_F_contig151:4196..4262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 4197..4262 -
1695995779.9007428-CDS-E-fasciculatus_F_contig151:4196..42621695995779.9007428-CDS-E-fasciculatus_F_contig151:4196..4262Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 4197..4262 -
1622927990.335794-CDS-E-fasciculatus_F_contig151:4596..48001622927990.335794-CDS-E-fasciculatus_F_contig151:4596..4800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 4597..4800 -
1695995779.9091108-CDS-E-fasciculatus_F_contig151:4596..48001695995779.9091108-CDS-E-fasciculatus_F_contig151:4596..4800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 4597..4800 -
1622927990.3513072-CDS-E-fasciculatus_F_contig151:5445..55561622927990.3513072-CDS-E-fasciculatus_F_contig151:5445..5556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 5446..5556 -
1695995779.9196255-CDS-E-fasciculatus_F_contig151:5445..55561695995779.9196255-CDS-E-fasciculatus_F_contig151:5445..5556Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig151 5446..5556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927990.361973-UTR-E-fasciculatus_F_contig151:5556..57071622927990.361973-UTR-E-fasciculatus_F_contig151:5556..5707Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 5557..5707 -
1695995779.9297585-UTR-E-fasciculatus_F_contig151:5556..57071695995779.9297585-UTR-E-fasciculatus_F_contig151:5556..5707Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 5557..5707 -
1622927990.376822-UTR-E-fasciculatus_F_contig151:5912..59801622927990.376822-UTR-E-fasciculatus_F_contig151:5912..5980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 5913..5980 -
1695995779.9405541-UTR-E-fasciculatus_F_contig151:5912..59801695995779.9405541-UTR-E-fasciculatus_F_contig151:5912..5980Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 5913..5980 -
1622927990.3897755-UTR-E-fasciculatus_F_contig151:6777..68741622927990.3897755-UTR-E-fasciculatus_F_contig151:6777..6874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 6778..6874 -
1695995779.9514618-UTR-E-fasciculatus_F_contig151:6777..68741695995779.9514618-UTR-E-fasciculatus_F_contig151:6777..6874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig151 6778..6874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig151.3613.1

>prot_E-fasciculatus_F_contig151.3613.1 ID=prot_E-fasciculatus_F_contig151.3613.1|Name=mRNA_E-fasciculatus_F_contig151.3613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
MALAKGQSLASLQKEKAAAPGSAAAPAASAAADTPGSVINLAGDDGMPPA
TAAAVPQGQAAVAGRSAGVSPAMASASGAGAAPPPVAARPRGGKGLNYLQ
QRAEPARVAQPAVAASMPQQAALQVAQ
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mRNA from alignment at E-fasciculatus_F_contig151:4197..6874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig151.3613.1 ID=mRNA_E-fasciculatus_F_contig151.3613.1|Name=mRNA_E-fasciculatus_F_contig151.3613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig151:4197..6874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGATAGACCGCAGGGATGGAAAGCTCTGCATGAGAGGGAACTGTCGG
TTGCTCGTGGCTAGAGGATATCTATCGACTGCGGCAGGTGAGCTGTGGTC
GGACCGTGGGACGAGAACCTCAGTCGTTGATGACTTGATGACGTTAGTTA
GCGGCGCCTCTCTTTGTCAACCTGCTCTCTCGCTCTCTCGCTCTCTCTCT
CTCGCTGCCGTCTGTCCGCTCGCTCGCCAGACAGCAGCAGGAGGTAAGGA
GGTAGCATGGAAGTGGTGCATGTGACGTATGATGATACCGCTCGGCTGCT
GTGTCAATTGCTTGTGTCCAACCAAAGCCGTATGTATTGATCGGGTCTTT
CCGTATTCGCGGAGAGCGGGGCGATATCGCCGTTGTTTGCTTGCTCCCTC
GGTTTTGGGGAGCAAAATGATGAAATCAAATAATATAATCCATGTTTTGA
TGTCAGGCGCCTCGGCGGCAAGAGATGCCTGCCTACGCCTGGGCCGACTT
ATTTCCATCAGCTCCGGTGTTTGGCGCGATCTGCGCGATTGCAAGAGCAC
TCGATGGTTGTGCTGGCTCCGTTCCCAATTTGAGTGTTGTTGTTTTTTAT
TCCCGCCGCTTTACATGGACCGCGCTTGAGGGCTGCTGCTGTATGCGTGA
GGAACTTCTGTCGTCAAAACAACCTTCGTGGGCTGCTGTACTGTATGCTT
ACGTGCTCTGTAGATCCATCATGCACCACCGCTGCTATTTCAAGCACCAG
CCCCACGTGCAAGCCACCGCGTTTGCGTATTCATTCATACACAAAAGCCG
TCGTCTTTTTTATTTAGTGCACTCAAGCGCAATCGACTGCGGCACTTTTT
TGACAAACTCCGATCCTCTCTGCAATGTTGGTACAAATGCAAAGGTGTTG
GTGACGGTGCTGGGGCTGGCGGCAGGTCAACGCGCCCGCGGGTATACCCA
CTGGGTAGACAGGTAACCCGTCCAAAGGTTGCTGACTCTGCCAACGAACC
GCCGCCGGAAACATGGTGCTGCAGCACGGTCCTACCTCTCTCTCTCTCTC
TCTCTCTCTCCCTCTCTCGTTCTCTCTCTCTCTCTCTGTCTTAACTCTCT
TTGTTTATCTCCCTCATCTAACCCTCTTAACTCCCTTCCCTCGTGCCACT
CCCGTCACGCGCGGCAGAGCTTGCCCACCGCGAGTGTGTGGTAGTGTCGT
CCCTTAAGCGGTCGGGGGCGCGCCGAGAGGACACGAAAGAGCCTTTTCAT
AGGCCAAGCATTCCGAATAGACCGAACCGACCGGCCAGCAGGAGGCCAGT
CCTCGGGCCAGACCGACCATGGCGCTTGCCAAGGGCCAATCTCTAGCGTC
GCTGCAGAAAGAGAAGGCGGCGGCGCCAGGCAGCGCAGCGGCGCCCGCAG
CAAGCGCGGCGGCTGACACGCCCGGTTCGGTGAGAGTCGAATAGGAGAAC
GTGCTGGGTGCTTTGCATACTCTGACAGCACGTGTGATAGAAAGGAGAGA
GAGGGAGGGTGAGCTTACGGGCACTTCTTCGCGCCGTGGACGTGGCGGAC
CCGAAGTTTGTTGATCGAAGCGGCGTAGAGCAGTGCGGGGCTCACCCCTG
TCTGTGAAGAAGGGTTGGCGATGGGGGATTCTGAGCCGGACGGTTGCTCG
CCCGGCATTCCCACACTGCTGTGCTCCAACAGGCCAGCAGGAACTGTTTT
TCGGTTGTTTCCGAAGCCATCGGTCTCTGCCTAACCTGCTCGTGTTACCT
TTCTGTGGTCATTCTCTTTCGAAGGATGAGAAACCGAGGAGTTTGCGAGG
AAAGCTCCACCTGAGCAGGCATTCTCGTCCACAATACCAGCGGTGGTCAT
GTTGATTTTTCTTTGCGTGCCTGTCGACGGCTGGCTGTGGAACGGTGCAG
CGGAGAGGGGGGGGATTTGGTCAGGCAAAACCCCTGATCCGCACGCAGGA
ACATTGCCGTGCACCATGGGTGTTGTTCGAGTGACGTCGAAGGGGGCACG
AGAGAGTTATCGCGTAGCCCCCCCCCCCCCCCCACCCAACACCTATCCGC
CGCCCCCCGCTTTGCGACGAACAGGTGATCAACTTAGCTGGCGACGATGG
GATGCCGCCGGCCACTGCGGCGGCTGTACCCCAGGGGCAGGCAGCAGTGG
CCGGTCGATCTGCTGGTGTCTCCCCAGCGATGGCGAGCGCAAGCGGAGCA
GGCGCCGCCCCTCCCCCCGTCGCTGCGCGCCCGCGGGGGGGCAAGGGGCT
GAACTACCTCCAGCAGCGCGCGGAGCCGGTGTGTTATTGTTGTAGCCCAT
TTTTTCGGCAGCAGTCAACAGCATTCGTTCTTCGCCTCTCTCTCTGTTCT
CTTGACTCGTTCTCTCCCTCTGTCTGTCTGTCTGTCTCTCTCTGTCTTTC
TGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTC
TGTCTTCCTGCTCGACGACGTTGTCATCGAACATGTTGGCTTGTGCCATG
GCATGTGATTCCTCGTGGCGTGCCAACTGCTGCTTGACGTTTGGTTTGAC
GCTCATACTTGTGAGTCGGTGCGACTTTTTGTTTTGCTCTCGATTCTCAT
GTCCCTGGTCAGGCAAGAGTTGCGCAGCCGGCCGTGGCCGCGAGTATGCC
GCAGCAGGCCGCTCTTCAAGTGGCACAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig151:4197..6874-

>mRNA_E-fasciculatus_F_contig151.3613.1 ID=mRNA_E-fasciculatus_F_contig151.3613.1|Name=mRNA_E-fasciculatus_F_contig151.3613.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig151:4197..6874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCTTGCCAAGGGCCAATCTCTAGCGTCGCTGCAGAAAGAGAAGGC
GGCGGCGCCAGGCAGCGCAGCGGCGCCCGCAGCAAGCGCGGCGGCTGACA
CGCCCGGTTCGATGGCGCTTGCCAAGGGCCAATCTCTAGCGTCGCTGCAG
AAAGAGAAGGCGGCGGCGCCAGGCAGCGCAGCGGCGCCCGCAGCAAGCGC
GGCGGCTGACACGCCCGGTTCGGTGATCAACTTAGCTGGCGACGATGGGA
TGCCGCCGGCCACTGCGGCGGCTGTACCCCAGGGGCAGGCAGCAGTGGCC
GGTCGATCTGCTGGTGTCTCCCCAGCGATGGCGAGCGCAAGCGGAGCAGG
CGCCGCCCCTCCCCCCGTCGCTGCGCGCCCGCGGGGGGGCAAGGGGCTGA
ACTACCTCCAGCAGCGCGCGGAGCCGGTGATCAACTTAGCTGGCGACGAT
GGGATGCCGCCGGCCACTGCGGCGGCTGTACCCCAGGGGCAGGCAGCAGT
GGCCGGTCGATCTGCTGGTGTCTCCCCAGCGATGGCGAGCGCAAGCGGAG
CAGGCGCCGCCCCTCCCCCCGTCGCTGCGCGCCCGCGGGGGGGCAAGGGG
CTGAACTACCTCCAGCAGCGCGCGGAGCCGGCAAGAGTTGCGCAGCCGGC
CGTGGCCGCGAGTATGCCGCAGCAGGCCGCTCTTCAAGTGGCACAGGCAA
GAGTTGCGCAGCCGGCCGTGGCCGCGAGTATGCCGCAGCAGGCCGCTCTT
CAAGTGGCACAG
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