prot_E-fasciculatus_F_contig1509.3609.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1509.3609.1
Unique Nameprot_E-fasciculatus_F_contig1509.3609.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length1033
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1509.3609.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 954 bits (2465), Expect = 0.000e+0
Identity = 858/974 (88.09%), Postives = 867/974 (89.01%), Query Frame = 0 
Query:   61 MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAAIXXXXXXXXXXXXXXXXXXXXSTGDKGPAVPAKPTRPGSGVSSSAPTRSRTSGVVGVASGGKNSSSRFRS-GAISSSNNSRGTRGGYYPRGRPGAENRGARGPGGRGAGVKRRRVLPDFTKVTKATAGPVVAAVGDEDYDTGLVAAIRATLDQTRAQLAGRKPSTAAAAGGVLPSLTHGATQQGWLRVIGLIRRACGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADLEDYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILASSLAGKWVEARDLALQWRGQAPSPASSSTPADDGGGAVSVGLGISRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATAXXXXXXXXXXXXXXXXXXEQESVRGFVCLDHSSFMAVLSACSKAGSWRAALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGXXXXXXXXKREPPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXQLIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXEMRKAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXHSKLLEEGMSPDPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGELISSLSDRGRWDDAQRVVEIAEKTGAVPASSLDSDFEVDVSHLPPAIAKVKVR 1033
            MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAA XXXXXXXXXXXXXXXXXXXX+  D  PA P KPT PGSGVSSSA TRSRTS V  VASGGK SSSRFRS GAISS  NSRGTRGG YPRGRPGAE+RGARGPGG+G GVKRRRVLPDFTK TKATA PV+AAVGD D DTGLVAAIRATLDQTRAQLAGRKPST+AAAGGVLPSLTHGATQQGWLRVIGLIRRACG                            XXXX RVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADL+DYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILA SLAGKWVEARDLALQWRGQAPSPAS                  SRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATA                  EQ SVRGFVCLDHSSFMAVLSACSKAG W +ALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGG        KRE PRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXX LIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXX MR+AGPRTQXXXXXXXXXXXXXXXXXXXXXXXXX SKLLEEGMSPDPAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TVGELISSLSDRGRWDDAQRVVEIAEKTGA+PASSLDSDFEVDVS LPPAIAKVK R
Sbjct:    1 MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAAXXXXXXXXXXXXXXXXXXXXXTAKD--PAAPTKPTLPGSGVSSSASTRSRTSNVD-VASGGKKSSSRFRSSGAISS--NSRGTRGGVYPRGRPGAESRGARGPGGKGFGVKRRRVLPDFTKATKATAVPVLAAVGDGD-DTGLVAAIRATLDQTRAQLAGRKPSTSAAAGGVLPSLTHGATQQGWLRVIGLIRRACGGTEESDRGSSGGPNGAAPGGVESSGVPPXXXXPRVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADLDDYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAGKWVEARDLALQWRGQAPSPASXXXXXXXXXXXXXXXXXXSRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATATATAASGAGTTED-----EQGSVRGFVCLDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXLIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXSKLLEEGMSPDPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKAR 963
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1509.3609.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLG9_ECTSI0.000e+088.09PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 619..752
e-value: 1.4E-37
score: 131.9
coord: 493..618
e-value: 4.5E-13
score: 51.4
coord: 329..482
e-value: 1.0E-14
score: 56.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 832..1018
e-value: 4.4E-40
score: 139.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 753..825
e-value: 3.4E-15
score: 58.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 561..608
e-value: 1.8E-4
score: 21.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 565..596
e-value: 1.7E-5
score: 22.7
coord: 869..898
e-value: 3.0E-5
score: 21.9
coord: 907..939
e-value: 9.2E-6
score: 23.5
coord: 690..723
e-value: 1.3E-7
score: 29.3
coord: 725..759
e-value: 4.1E-8
score: 30.9
coord: 942..975
e-value: 0.0029
score: 15.7
coord: 763..794
e-value: 7.3E-6
score: 23.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 687..736
e-value: 4.1E-12
score: 46.1
coord: 757..804
e-value: 5.8E-10
score: 39.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 651..680
e-value: 0.021
score: 15.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 688..722
score: 12.759
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 939..973
score: 9.975
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 974..1008
score: 9.284
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 499..533
score: 5.316
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 793..823
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 867..901
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 404..438
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 6.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 649..683
score: 8.988
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..396
score: 5.382
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 828..858
score: 6.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 758..792
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 904..938
score: 11.148
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 723..757
score: 12.342
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 562..596
score: 11.389
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 848..965
e-value: 1.1E-8
score: 34.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 754..874
coord: 629..759
coord: 828..1008
coord: 339..461
coord: 559..680

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1509contigE-fasciculatus_F_contig1509:9482..17274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1509.3609.1mRNA_E-fasciculatus_F_contig1509.3609.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1509 9482..17274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1509.3609.1 ID=prot_E-fasciculatus_F_contig1509.3609.1|Name=mRNA_E-fasciculatus_F_contig1509.3609.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1033bp
MIIPAVIGGYGISSWSSARTGRNVAFSSAPSAAAGLSWRNHRGSSVTAAA
PAARFPRSRAMTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQ
AAIAAAAVDTATAPAGGGGNSSSSTGDKGPAVPAKPTRPGSGVSSSAPTR
SRTSGVVGVASGGKNSSSRFRSGAISSSNNSRGTRGGYYPRGRPGAENRG
ARGPGGRGAGVKRRRVLPDFTKVTKATAGPVVAAVGDEDYDTGLVAAIRA
TLDQTRAQLAGRKPSTAAAAGGVLPSLTHGATQQGWLRVIGLIRRACGGG
EESDRGSSGGPNGAAPGGVDSGGVPPPPPPPRVAFELALEVCVLCERPDA
GLEVLSLMRSTGLQADLEDYKTVLKGYSANRKQGKALFTVQTMSAVQQAG
LVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAS
SLAGKWVEARDLALQWRGQAPSPASSSTPADDGGGAVSVGLGISRPPPPT
VCNTAILKAMGKAGKVDEAIAWLGDTYDAATAAAAAAATAVSGGGSTKDD
EQESVRGFVCLDHSSFMAVLSACSKAGSWRAALSVLREMDRAGVTPETVA
FNTVLAAFEHRAHSGGSSSGGGAAKREPPRWPMALELLADMERRGVEPDV
VTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAACA
SGGEWKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAM
EASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAA
IQACGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALA
LLEQMKANKGGVNAGPDMVTYTSAIMACSSTGKWDRALSLLDEMRKAGPR
TQPNIRSYTAAIAACGRARKWEEAVALHSKLLEEGMSPDPASFNAVIRAA
RRGGQHKLSMKLLASMVEAGLTPDAVTVGELISSLSDRGRWDDAQRVVEI
AEKTGAVPASSLDSDFEVDVSHLPPAIAKVKVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf