mRNA_E-fasciculatus_F_contig1509.3609.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1509.3609.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI) HSP 1 Score: 954 bits (2465), Expect = 0.000e+0 Identity = 858/974 (88.09%), Postives = 867/974 (89.01%), Query Frame = 1
Query: 181 MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAAIXXXXXXXXXXXXXXXXXXXXSTGDKGPAVPAKPTRPGSGVSSSAPTRSRTSGVVGVASGGKNSSSRFRS-GAISSSNNSRGTRGGYYPRGRPGAENRGARGPGGRGAGVKRRRVLPDFTKVTKATAGPVVAAVGDEDYDTGLVAAIRATLDQTRAQLAGRKPSTAAAAGGVLPSLTHGATQQGWLRVIGLIRRACGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADLEDYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILASSLAGKWVEARDLALQWRGQAPSPASSSTPADDGGGAVSVGLGISRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATAXXXXXXXXXXXXXXXXXXEQESVRGFVCLDHSSFMAVLSACSKAGSWRAALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGXXXXXXXXKREPPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXQLIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXEMRKAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXHSKLLEEGMSPDPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVGELISSLSDRGRWDDAQRVVEIAEKTGAVPASSLDSDFEVDVSHLPPAIAKVKVR 3099
MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAA XXXXXXXXXXXXXXXXXXXX+ D PA P KPT PGSGVSSSA TRSRTS V VASGGK SSSRFRS GAISS NSRGTRGG YPRGRPGAE+RGARGPGG+G GVKRRRVLPDFTK TKATA PV+AAVGD D DTGLVAAIRATLDQTRAQLAGRKPST+AAAGGVLPSLTHGATQQGWLRVIGLIRRACG XXXX RVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADL+DYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILA SLAGKWVEARDLALQWRGQAPSPAS SRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATA EQ SVRGFVCLDHSSFMAVLSACSKAG W +ALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGG KRE PRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXX LIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXX MR+AGPRTQXXXXXXXXXXXXXXXXXXXXXXXXX SKLLEEGMSPDPAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TVGELISSLSDRGRWDDAQRVVEIAEKTGA+PASSLDSDFEVDVS LPPAIAKVK R
Sbjct: 1 MTMLASSTADEKSLEEAHTSRLEEARMLVRARRQEAKARQAAXXXXXXXXXXXXXXXXXXXXXTAKD--PAAPTKPTLPGSGVSSSASTRSRTSNVD-VASGGKKSSSRFRSSGAISS--NSRGTRGGVYPRGRPGAESRGARGPGGKGFGVKRRRVLPDFTKATKATAVPVLAAVGDGD-DTGLVAAIRATLDQTRAQLAGRKPSTSAAAGGVLPSLTHGATQQGWLRVIGLIRRACGGTEESDRGSSGGPNGAAPGGVESSGVPPXXXXPRVAFELALEVCVLCERPDAGLEVLSLMRSTGLQADLDDYKTVLKGYSANRKQGKALFTVQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAGKWVEARDLALQWRGQAPSPASXXXXXXXXXXXXXXXXXXSRPPPPTVCNTAILKAMGKAGKVDEAIAWLGDTYDAATATATAASGAGTTED-----EQGSVRGFVCLDHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXLIGEMRRKGLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXSKLLEEGMSPDPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKAR 963 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1509.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1509.3609.1 >prot_E-fasciculatus_F_contig1509.3609.1 ID=prot_E-fasciculatus_F_contig1509.3609.1|Name=mRNA_E-fasciculatus_F_contig1509.3609.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1033bp MIIPAVIGGYGISSWSSARTGRNVAFSSAPSAAAGLSWRNHRGSSVTAAAback to top mRNA from alignment at E-fasciculatus_F_contig1509:9482..17274+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1509.3609.1 ID=mRNA_E-fasciculatus_F_contig1509.3609.1|Name=mRNA_E-fasciculatus_F_contig1509.3609.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1509:9482..17274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1509:9482..17274+ >mRNA_E-fasciculatus_F_contig1509.3609.1 ID=mRNA_E-fasciculatus_F_contig1509.3609.1|Name=mRNA_E-fasciculatus_F_contig1509.3609.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1509:9482..17274+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |