mRNA_E-fasciculatus_F_contig1508.3605.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3605.1
Unique NamemRNA_E-fasciculatus_F_contig1508.3605.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A6H5KLM1_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.470e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAGE 243
            LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAGE
Sbjct: 1230 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAGE 1310          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: D7G482_ECTSI (Lipase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G482_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.490e-46
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            LYVTGHSLGGALASLAAYDIDKNFTLPDP TLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG
Sbjct: 1244 LYVTGHSLGGALASLAAYDIDKNFTLPDPTTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 1323          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A835YWF8_9STRA (Lipase_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWF8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.800e-29
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   34 LASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            +A LAAYDI  NF LPD ++LYTFG+PRVGN  FAR+LD+RV+ HFR+VNDGDLI  LP+F GTY+HAG
Sbjct:    1 MACLAAYDIASNFALPDELSLYTFGAPRVGNAAFARRLDARVRQHFRVVNDGDLIAGLPQFLGTYRHAG 69          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A1V9ZIX8_9STRA (Lipase_3 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIX8_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.440e-22
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            +YVTGHS+GGALA LAAYD+  +F++P  + +Y FG PRVGN  F R+ D RV   FR+V DGDL+  +PRF+G Y+H G
Sbjct:  706 VYVTGHSMGGALAVLAAYDVATHFSVP--VHMYNFGGPRVGNPAFVRQYDRRVPDSFRVVFDGDLVAGIPRFWGLYEHVG 783          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A7S2H3L5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3L5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.590e-22
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAGER 246
            L +TGHS GGALA LAA D+  +  LPDP+T+YTFG+P VGN   A + ++ V HHFR+V DGD IT  PR FG Y+H+G +
Sbjct:  165 LVITGHSFGGALAVLAARDLATSLDLPDPITVYTFGAPCVGNLALALETNNLVPHHFRVVVDGDSITHPPRPFGPYQHSGRQ 246          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A4D9DDQ7_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDQ7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.780e-21
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            LY TGHSLGGALA LAAYD+  NF     + +YT GSPRVGN  F+   ++RV   FR+V DGDL+  +P+ FG Y+H+G
Sbjct:  892 LYCTGHSLGGALAQLAAYDLSINFPALRHIEVYTLGSPRVGNPAFSSAYEARVPATFRVVVDGDLVPGMPKIFGMYRHSG 971          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A1W0A2H2_9STRA (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2H2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.440e-20
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            +Y+TGHS+GGALA  AAYD   +F +P+ + +Y FG PRVGN  F R+ +++V + FR+V DGDL+  +PRF+G Y+H G
Sbjct:  703 VYITGHSMGGALAICAAYDCAVHFNIPN-IHMYNFGGPRVGNPAFVRQYNNKVPNSFRIVFDGDLVAGIPRFWGLYEHVG 781          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: W7TMI7_9STRA (Myb family transcription factor n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMI7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.990e-20
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            LY TGHSLGGALA LAAYD+  NF     + +YT G+PRVGN  F+   ++RV   FR+V DGDL+  +P+ FG Y+H+G
Sbjct: 1058 LYCTGHSLGGALAQLAAYDLSINFPALRHIQVYTLGAPRVGNPAFSSAYEARVPATFRVVVDGDLVPGMPKIFGMYRHSG 1137          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A024UCG4_9STRA (Lipase_3 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCG4_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.330e-20
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            LYVTGHS+GGALA LAAYD   +F +   +T+Y FG+PRVGN  F R+ +  V +  R+V DGDL+  +PRF+G Y+H G
Sbjct:  712 LYVTGHSMGGALAVLAAYDCAVHFNIA--ITMYNFGAPRVGNPAFVRQYNRAVPNSHRVVLDGDLVAGIPRFWGLYEHVG 789          
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Match: A0A0P1AQP3_PLAHL (Lipase_3 domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQP3_PLAHL)

HSP 1 Score: 91.7 bits (226), Expect = 9.530e-20
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 1
Query:    1 LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLDSRVKHHFRLVNDGDLITALPRFFGTYKHAG 240
            +Y+TGHS+GGALA LAAYD+  NF++   +T+Y FG PRVGN  F +  DS V   +R+V DGD++   PRF+G Y+H G
Sbjct: 1951 IYITGHSMGGALAVLAAYDLAVNFSIQ--VTMYNFGGPRVGNPSFRQHFDSCVPTSYRVVMDGDIVPGWPRFWGLYQHVG 2028          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLM1_9PHAE1.470e-47100.00Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7G482_ECTSI4.490e-4698.75Lipase domain protein n=1 Tax=Ectocarpus siliculos... [more]
A0A835YWF8_9STRA6.800e-2969.57Lipase_3 domain-containing protein n=1 Tax=Tribone... [more]
A0A1V9ZIX8_9STRA3.440e-2256.25Lipase_3 domain-containing protein n=1 Tax=Achlya ... [more]
A0A7S2H3L5_9STRA7.590e-2256.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DDQ7_9STRA7.780e-2155.00Lipase_3 domain-containing protein n=1 Tax=Nannoch... [more]
A0A1W0A2H2_9STRA1.440e-2051.25Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
W7TMI7_9STRA1.990e-2053.75Myb family transcription factor n=1 Tax=Nannochlor... [more]
A0A024UCG4_9STRA9.330e-2053.75Lipase_3 domain-containing protein n=2 Tax=Aphanom... [more]
A0A0P1AQP3_PLAHL9.530e-2052.50Lipase_3 domain-containing protein n=1 Tax=Plasmop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:17119..17654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.1e-39
Seed eggNOG ortholog2880.D7G482
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.2805626-CDS-E-fasciculatus_F_contig1508:17118..172661622927987.2805626-CDS-E-fasciculatus_F_contig1508:17118..17266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 17119..17266 -
1695995779.4706233-CDS-E-fasciculatus_F_contig1508:17118..172661695995779.4706233-CDS-E-fasciculatus_F_contig1508:17118..17266Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 17119..17266 -
1622927987.2952363-CDS-E-fasciculatus_F_contig1508:17553..176541622927987.2952363-CDS-E-fasciculatus_F_contig1508:17553..17654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 17554..17654 -
1695995779.4846013-CDS-E-fasciculatus_F_contig1508:17553..176541695995779.4846013-CDS-E-fasciculatus_F_contig1508:17553..17654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 17554..17654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3605.1prot_E-fasciculatus_F_contig1508.3605.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1508 17119..17654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1508.3605.1

>prot_E-fasciculatus_F_contig1508.3605.1 ID=prot_E-fasciculatus_F_contig1508.3605.1|Name=mRNA_E-fasciculatus_F_contig1508.3605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
LYVTGHSLGGALASLAAYDIDKNFTLPDPMTLYTFGSPRVGNGVFARKLD
SRVKHHFRLVNDGDLITALPRFFGTYKHAGER*
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mRNA from alignment at E-fasciculatus_F_contig1508:17119..17654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1508.3605.1 ID=mRNA_E-fasciculatus_F_contig1508.3605.1|Name=mRNA_E-fasciculatus_F_contig1508.3605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=536bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:17119..17654- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTATGTGACCGGGCACAGCCTCGGCGGCGCGCTCGCTTCTCTAGCGGC CTACGACATAGACAAGAACTTCACGCTGCCTGACCCAATGACGCTCTACA CGTGAGTGTGACGCTTCCCGCTGCGCCTGTGATGCCACCACGCAACACTC GAAGGGGGGGAGGGGTGTACTCAAGGCCGTTGCGTGACGTTGACTGTAAA CCATCCGTCGACGACAAAGCAATGATCACTACCGTAGGCCCCAGCGACTT TGACCTTCACCCTCAAAATCAATCCAATACGTCTGACAAACCCTTTTTCG CAAAACCGAGTCAACTTGAAGCCCCAGGGTTAAAATCCGAACGGCTTCGC CGTGACCTCCATCTTTGATCCATGGGACGGAATAACAGGTTCGGATCCCC TCGTGTTGGCAACGGGGTGTTTGCGCGCAAGCTGGACAGCAGGGTGAAGC ACCACTTCCGCCTCGTCAACGACGGCGATCTCATCACGGCTCTGCCTCGG TTCTTCGGTACCTACAAACATGCAGGCGAGAGATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1508:17119..17654-

>mRNA_E-fasciculatus_F_contig1508.3605.1 ID=mRNA_E-fasciculatus_F_contig1508.3605.1|Name=mRNA_E-fasciculatus_F_contig1508.3605.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:17119..17654- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGTATGTGACCGGGCACAGCCTCGGCGGCGCGCTCGCTTCTCTAGCGGC
CTACGACATAGACAAGAACTTCACGCTGCCTGACCCAATGACGCTCTACA
CCTGTATGTGACCGGGCACAGCCTCGGCGGCGCGCTCGCTTCTCTAGCGG
CCTACGACATAGACAAGAACTTCACGCTGCCTGACCCAATGACGCTCTAC
ACGTTCGGATCCCCTCGTGTTGGCAACGGGGTGTTTGCGCGCAAGCTGGA
CAGCAGGGTGAAGCACCACTTCCGCCTCGTCAACGACGGCGATCTCATCA
CGGCTCTGCCTCGGTTCTTCGGTACCTACAAACATGCAGGCGAGAGATAG
GTTCGGATCCCCTCGTGTTGGCAACGGGGTGTTTGCGCGCAAGCTGGACA
GCAGGGTGAAGCACCACTTCCGCCTCGTCAACGACGGCGATCTCATCACG
GCTCTGCCTCGGTTCTTCGGTACCTACAAACATGCAGGCGAGAGATAG
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