prot_E-fasciculatus_F_contig1508.3601.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3601.1
Unique Nameprot_E-fasciculatus_F_contig1508.3601.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length226
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 5.050e-138
Identity = 201/225 (89.33%), Postives = 206/225 (91.56%), Query Frame = 0 
Query:    1 PLLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLADARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYFSDGVTWNSRRAGPAEYSGCRSETQT 225
            PLLWSLTFRQCQL SLLPVAGLLHHLDGLIGLG HGID L LAGVERVLADARCLCTLTIRHC L RLPRLQSGSIEVLD+SNNAIESAAGLETLFRLKELNLAGNRIRTL GLRPLVPLGTGRLRELNL+SNPVQNTPRYRESVLAVFPSIQ LDGIAKSQ WR R+ATKTNTVG  GH+RRAC TPP VRNAF+EGYFSDG TWNSRRAG AEYS C SET T
Sbjct:    4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVGEEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAGLAEYSTCGSETHT 228
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 2.280e-129
Identity = 192/224 (85.71%), Postives = 199/224 (88.84%), Query Frame = 0 
Query:    2 LLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLADARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYFSDGVTWNSRRAGPAEYSGCRSETQT 225
            LLWSLTFRQCQL SLLPVAGLLHHLDGLIGLG HG D LALAG+ERVLADARCLCTLTIR CGL RLPRLQSGSIEVLD SNNAIESAAGLETLFRL+ELNLAGNRIRTL  LRPL+PLGTGRLRELNLE+NPVQ++PRYRESVLAVFPSIQ LDGIAKSQ WR R+ATK N  G  GHNRRAC TPP VRNAFAEGYFSDG TWNSRRAG  EYS C SE QT
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAGEEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAGLKEYSKCGSEAQT 312
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A074ZR27_9TREM (Uncharacterized protein n=2 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZR27_9TREM)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-6
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 0 
Query:   55 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 165
            L  L I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +  L      +     +L++LNL+ NP +     R  V A  PSI+ +DG   + N R
Sbjct:  699 LTVLFINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNILTNLFQDVITISNSCTKLQDLNLQFNPWKVPTEVRLFVAAYLPSIETIDGYLVTANDR 809
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A4S2MFB7_OPIFE (Uncharacterized protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MFB7_OPIFE)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-6
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = 0 
Query:   55 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 165
            L  L+I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +         +     +LR+LNL+ NP +     R  V A  PSI  +DG     N R
Sbjct:  703 LTILSINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNAFPDVIAISNACTKLRDLNLQFNPWKAPTEVRLFVAAYVPSINTIDGYMVPDNDR 813
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A3R7D324_CLOSI (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A3R7D324_CLOSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.790e-5
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 0 
Query:   55 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 165
            L  L+I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +  L      +     +L++LNL+ NP +        V A  PSI+ +DG     N R
Sbjct: 1808 LTVLSINHCRLRVLPALANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNLFLDVITISNSCTKLQDLNLQFNPWKALTEVHLFVAAYLPSIKTVDGYLVPDNDR 1918
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G481_ECTSI5.050e-13889.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE2.280e-12985.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A074ZR27_9TREM8.140e-635.14Uncharacterized protein n=2 Tax=Opisthorchiidae Ta... [more]
A0A4S2MFB7_OPIFE8.140e-635.14Uncharacterized protein n=1 Tax=Opisthorchis felin... [more]
A0A3R7D324_CLOSI2.790e-534.23Poly(A)-specific ribonuclease (Fragment) n=1 Tax=C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14580LRR_9coord: 76..156
e-value: 1.1E-7
score: 31.5
NoneNo IPR availablePANTHERPTHR15454NISCHARIN RELATEDcoord: 42..170
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.46
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 47..162
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 41..166
e-value: 4.5E-23
score: 83.2
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 54..73
score: 4.508
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 97..118
score: 8.22
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 124..145
score: 5.748
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 75..96
score: 7.774

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:4789..6198 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3601.1mRNA_E-fasciculatus_F_contig1508.3601.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1508 4789..6198 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1508.3601.1 ID=prot_E-fasciculatus_F_contig1508.3601.1|Name=mRNA_E-fasciculatus_F_contig1508.3601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
PLLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLA
DARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKE
LNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFP
SIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYF
SDGVTWNSRRAGPAEYSGCRSETQTN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf