mRNA_E-fasciculatus_F_contig1508.3601.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3601.1
Unique NamemRNA_E-fasciculatus_F_contig1508.3601.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 5.050e-138
Identity = 201/225 (89.33%), Postives = 206/225 (91.56%), Query Frame = 1 
Query:    1 PLLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLADARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYFSDGVTWNSRRAGPAEYSGCRSETQT 675
            PLLWSLTFRQCQL SLLPVAGLLHHLDGLIGLG HGID L LAGVERVLADARCLCTLTIRHC L RLPRLQSGSIEVLD+SNNAIESAAGLETLFRLKELNLAGNRIRTL GLRPLVPLGTGRLRELNL+SNPVQNTPRYRESVLAVFPSIQ LDGIAKSQ WR R+ATKTNTVG  GH+RRAC TPP VRNAF+EGYFSDG TWNSRRAG AEYS C SET T
Sbjct:    4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVGEEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAGLAEYSTCGSETHT 228
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 376 bits (966), Expect = 2.280e-129
Identity = 192/224 (85.71%), Postives = 199/224 (88.84%), Query Frame = 1 
Query:    4 LLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLADARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYFSDGVTWNSRRAGPAEYSGCRSETQT 675
            LLWSLTFRQCQL SLLPVAGLLHHLDGLIGLG HG D LALAG+ERVLADARCLCTLTIR CGL RLPRLQSGSIEVLD SNNAIESAAGLETLFRL+ELNLAGNRIRTL  LRPL+PLGTGRLRELNLE+NPVQ++PRYRESVLAVFPSIQ LDGIAKSQ WR R+ATK N  G  GHNRRAC TPP VRNAFAEGYFSDG TWNSRRAG  EYS C SE QT
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSPRYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAGEEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAGLKEYSKCGSEAQT 312
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A074ZR27_9TREM (Uncharacterized protein n=2 Tax=Opisthorchiidae TaxID=6196 RepID=A0A074ZR27_9TREM)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-6
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  163 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 495
            L  L I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +  L      +     +L++LNL+ NP +     R  V A  PSI+ +DG   + N R
Sbjct:  699 LTVLFINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNILTNLFQDVITISNSCTKLQDLNLQFNPWKVPTEVRLFVAAYLPSIETIDGYLVTANDR 809
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A4S2MFB7_OPIFE (Uncharacterized protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MFB7_OPIFE)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-6
Identity = 39/111 (35.14%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:  163 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 495
            L  L+I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +         +     +LR+LNL+ NP +     R  V A  PSI  +DG     N R
Sbjct:  703 LTILSINHCRLRVLPTLANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNAFPDVIAISNACTKLRDLNLQFNPWKAPTEVRLFVAAYVPSINTIDGYMVPDNDR 813
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BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Match: A0A3R7D324_CLOSI (Poly(A)-specific ribonuclease (Fragment) n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A3R7D324_CLOSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.790e-5
Identity = 38/111 (34.23%), Postives = 56/111 (50.45%), Query Frame = 1 
Query:  163 LCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKELNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFPSIQFLDGIAKSQNWR 495
            L  L+I HC L  LP L +  ++ LDLS+N + +   L +L RLK LN+  N +  L      +     +L++LNL+ NP +        V A  PSI+ +DG     N R
Sbjct: 1808 LTVLSINHCRLRVLPALANLPLQSLDLSHNLLPTLTNLNSLPRLKVLNVNYNMLTNLFLDVITISNSCTKLQDLNLQFNPWKALTEVHLFVAAYLPSIKTVDGYLVPDNDR 1918
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G481_ECTSI5.050e-13889.33Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE2.280e-12985.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A074ZR27_9TREM8.140e-635.14Uncharacterized protein n=2 Tax=Opisthorchiidae Ta... [more]
A0A4S2MFB7_OPIFE8.140e-635.14Uncharacterized protein n=1 Tax=Opisthorchis felin... [more]
A0A3R7D324_CLOSI2.790e-534.23Poly(A)-specific ribonuclease (Fragment) n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:4789..6198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-02_001650.1
Exons3
Model size678
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3601.1prot_E-fasciculatus_F_contig1508.3601.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1508 4789..6198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.1895204-CDS-E-fasciculatus_F_contig1508:4788..52071622927987.1895204-CDS-E-fasciculatus_F_contig1508:4788..5207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 4789..5207 +
1695995779.4447384-CDS-E-fasciculatus_F_contig1508:4788..52071695995779.4447384-CDS-E-fasciculatus_F_contig1508:4788..5207Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 4789..5207 +
1622927987.2034042-CDS-E-fasciculatus_F_contig1508:5585..56871622927987.2034042-CDS-E-fasciculatus_F_contig1508:5585..5687Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 5586..5687 +
1695995779.4523883-CDS-E-fasciculatus_F_contig1508:5585..56871695995779.4523883-CDS-E-fasciculatus_F_contig1508:5585..5687Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 5586..5687 +
1622927987.2172675-CDS-E-fasciculatus_F_contig1508:6041..61981622927987.2172675-CDS-E-fasciculatus_F_contig1508:6041..6198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 6042..6198 +
1695995779.4601986-CDS-E-fasciculatus_F_contig1508:6041..61981695995779.4601986-CDS-E-fasciculatus_F_contig1508:6041..6198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 6042..6198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1508.3601.1

>prot_E-fasciculatus_F_contig1508.3601.1 ID=prot_E-fasciculatus_F_contig1508.3601.1|Name=mRNA_E-fasciculatus_F_contig1508.3601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
PLLWSLTFRQCQLASLLPVAGLLHHLDGLIGLGFHGIDRLALAGVERVLA
DARCLCTLTIRHCGLTRLPRLQSGSIEVLDLSNNAIESAAGLETLFRLKE
LNLAGNRIRTLLGLRPLVPLGTGRLRELNLESNPVQNTPRYRESVLAVFP
SIQFLDGIAKSQNWRTRSATKTNTVGGGGHNRRACRTPPSVRNAFAEGYF
SDGVTWNSRRAGPAEYSGCRSETQTN
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mRNA from alignment at E-fasciculatus_F_contig1508:4789..6198+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1508.3601.1 ID=mRNA_E-fasciculatus_F_contig1508.3601.1|Name=mRNA_E-fasciculatus_F_contig1508.3601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1410bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:4789..6198+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTTGCTTTGGTCGTTGACCTTCCGGCAGTGCCAGCTGGCGTCATTGCT
GCCCGTGGCAGGCTTGCTGCACCACCTGGACGGTTTGATTGGCCTCGGGT
TTCACGGGATAGATAGGCTAGCCCTTGCTGGGGTCGAGCGCGTGCTGGCC
GATGCAAGGTGCCTATGCACGCTCACTATTCGACACTGTGGCCTGACACG
ACTGCCTCGCCTTCAAAGTGGATCGATCGAGGTTTTAGATTTAAGTAACA
ACGCCATTGAAAGCGCAGCGGGCCTAGAGACCCTGTTCCGCCTCAAAGAG
CTGAATCTGGCAGGCAACCGCATACGCACGCTATTGGGTTTACGACCGTT
GGTGCCACTAGGGACTGGTCGCCTACGGGAGCTGAACTTGGAAAGCAATC
CTGTGCAAAATACCCCAAGGTCAGTGCGACTGACTCCTCCAAAAAGGGTG
TGTGTGTGTCGTCCTTATGCCGACAGTCCCCCAATTTTCCGTGGTGAGAC
GTGTACCACATTTTTCAGTGTATGAAGAGTACATACTACACTTTTCTGTG
TATTTTTTCGTACACCTACAACCATCCAGGGTCACACATGTGCAACATCC
AATTGAATCCATTTTCGTATCATCCTCCGCACCAATAAACTAAGCGCATG
CTTGTTGTTGGCGAACTTTCAGACCGTTGGAGGGTATGCTACTTTCAGCT
TTAGGGTCACGAACATGTATATTCTCGTAGATCTTCCTGACTGACCAGCT
TTCTATGAAAGTCGTTTTCCGCTTCGCATGTGTGTTTGCGTATGCAGGTA
TAGGGAATCGGTCTTGGCGGTCTTCCCATCTATCCAATTTCTCGACGGGA
TCGCAAAAAGCCAAAATTGGCGGACGCGGTCGGCAACAAAGACAAACACG
TGAGCAAACGAATAAACGGTGTCTTGAAGAAGACGGTACCGATTTGCAAC
CTTGCCAAAATTTCGAGCACCCTACAAGATACCTTCCTCTGCCGTATCAC
CGTGGCAACGACCGCCTACAAAAACTCTACCAGAGAGACACAAGTATAGA
TGGCGGCACTATTACAAGTGCTGTTACGGAAACGACGGGTCGAAGTCGCG
TGTAGCGTCTGTGGCAAGCGCCAATGCTGGCAAGGATTCCGTTTGAACCG
TGTAGGATAGTTGTATGACCTGCCAATTGTATTTTCCTCGTTTTACCGTT
GGAGAAAAATGACTTGATGCCTCGATGGGGTTGGAACCGTGCCCCTGTCG
CAGGGTGGGGGGAGGAGGTCACAACAGGCGAGCGTGCCGTACACCACCGA
GTGTCAGGAATGCCTTCGCGGAAGGGTATTTCAGCGATGGTGTGACTTGG
AACTCAAGGAGGGCAGGGCCGGCGGAGTATTCGGGGTGCCGCTCGGAAAC
CCAAACTAAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1508:4789..6198+

>mRNA_E-fasciculatus_F_contig1508.3601.1 ID=mRNA_E-fasciculatus_F_contig1508.3601.1|Name=mRNA_E-fasciculatus_F_contig1508.3601.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:4789..6198+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTTGCTTTGGTCGTTGACCTTCCGGCAGTGCCAGCTGGCGTCATTGCT
GCCCGTGGCAGGCTTGCTGCACCACCTGGACGGTTTGATTGGCCTCGGGT
TTCACGGGATAGATAGGCTAGCCCTTGCTGGGGTCGAGCGCGTGCTGGCC
GATGCAAGGTGCCTATGCACGCTCACTATTCGACACTGTGGCCTGACACG
ACTGCCTCGCCTTCAAAGTGGATCGATCGAGGTTTTAGATTTAAGTAACA
ACGCCATTGAAAGCGCAGCGGGCCTAGAGACCCTGTTCCGCCTCAAAGAG
CTGAATCTGGCAGGCAACCGCATACGCACGCTATTGGGTTTACGACCGTT
GGTGCCACTAGGGACTGGTCGCCTACGGGAGCTGAACTTGGAAAGCAATC
CTGTGCAAAATACCCCAAGCCGTTGCTTTGGTCGTTGACCTTCCGGCAGT
GCCAGCTGGCGTCATTGCTGCCCGTGGCAGGCTTGCTGCACCACCTGGAC
GGTTTGATTGGCCTCGGGTTTCACGGGATAGATAGGCTAGCCCTTGCTGG
GGTCGAGCGCGTGCTGGCCGATGCAAGGTGCCTATGCACGCTCACTATTC
GACACTGTGGCCTGACACGACTGCCTCGCCTTCAAAGTGGATCGATCGAG
GTTTTAGATTTAAGTAACAACGCCATTGAAAGCGCAGCGGGCCTAGAGAC
CCTGTTCCGCCTCAAAGAGCTGAATCTGGCAGGCAACCGCATACGCACGC
TATTGGGTTTACGACCGTTGGTGCCACTAGGGACTGGTCGCCTACGGGAG
CTGAACTTGGAAAGCAATCCTGTGCAAAATACCCCAAGGTATAGGGAATC
GGTCTTGGCGGTCTTCCCATCTATCCAATTTCTCGACGGGATCGCAAAAA
GCCAAAATTGGCGGACGCGGTCGGCAACAAAGACAAACACGTATAGGGAA
TCGGTCTTGGCGGTCTTCCCATCTATCCAATTTCTCGACGGGATCGCAAA
AAGCCAAAATTGGCGGACGCGGTCGGCAACAAAGACAAACACGGTGGGGG
GAGGAGGTCACAACAGGCGAGCGTGCCGTACACCACCGAGTGTCAGGAAT
GCCTTCGCGGAAGGGTATTTCAGCGATGGTGTGACTTGGAACTCAAGGAG
GGCAGGGCCGGCGGAGTATTCGGGGTGCCGCTCGGAAACCCAAACTAACG
GTGGGGGGAGGAGGTCACAACAGGCGAGCGTGCCGTACACCACCGAGTGT
CAGGAATGCCTTCGCGGAAGGGTATTTCAGCGATGGTGTGACTTGGAACT
CAAGGAGGGCAGGGCCGGCGGAGTATTCGGGGTGCCGCTCGGAAACCCAA
ACTAAC
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