mRNA_E-fasciculatus_F_contig1508.3603.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3603.1
Unique NamemRNA_E-fasciculatus_F_contig1508.3603.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:8790..9117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.14459-CDS-E-fasciculatus_F_contig1508:8789..91161622927987.14459-CDS-E-fasciculatus_F_contig1508:8789..9116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 8790..9116 +
1695995779.4340544-CDS-E-fasciculatus_F_contig1508:8789..91161695995779.4340544-CDS-E-fasciculatus_F_contig1508:8789..9116Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 8790..9116 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3603.1prot_E-fasciculatus_F_contig1508.3603.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1508 8790..9116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1508.3603.1

>prot_E-fasciculatus_F_contig1508.3603.1 ID=prot_E-fasciculatus_F_contig1508.3603.1|Name=mRNA_E-fasciculatus_F_contig1508.3603.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
HDRHPGSSPWGEPTDQMDASPSAPTAESSTVATEYVSRARAEGATTSVPN
PAPRQQHTRALFSSSPSSSPSPSPTGRSLSTPPRRATLILSDSLALKPPD
EEGSCPPKT
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mRNA from alignment at E-fasciculatus_F_contig1508:8790..9117+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1508.3603.1 ID=mRNA_E-fasciculatus_F_contig1508.3603.1|Name=mRNA_E-fasciculatus_F_contig1508.3603.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:8790..9117+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACCGACATCCCGGCTCTTCACCGTGGGGGGAACCAACAGATCAAAT
GGATGCCTCACCGTCAGCTCCTACTGCGGAATCCTCAACCGTCGCCACGG
AATACGTGTCTCGCGCTCGAGCCGAGGGAGCTACTACTAGTGTTCCAAAC
CCGGCGCCGCGGCAACAACATACGAGGGCATTATTTTCATCATCTCCATC
TTCATCACCATCGCCGTCGCCCACGGGTAGATCGCTCAGTACGCCACCCC
GTCGGGCTACCCTTATCCTTTCGGACAGTTTGGCGTTGAAACCGCCCGAT
GAGGAAGGAAGCTGCCCTCCAAAAACAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1508:8790..9117+

>mRNA_E-fasciculatus_F_contig1508.3603.1 ID=mRNA_E-fasciculatus_F_contig1508.3603.1|Name=mRNA_E-fasciculatus_F_contig1508.3603.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:8790..9117+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGACCGACATCCCGGCTCTTCACCGTGGGGGGAACCAACAGATCAAAT
GGATGCCTCACCGTCAGCTCCTACTGCGGAATCCTCAACCGTCGCCACGG
AATACGTGTCTCGCGCTCGAGCCGAGGGAGCTACTACTAGTGTTCCAAAC
CCGGCGCCGCGGCAACAACATACGAGGGCATTATTTTCATCATCTCCATC
TTCATCACCATCGCCGTCGCCCACGGGTAGATCGCTCAGTACGCCACCCC
GTCGGGCTACCCTTATCCTTTCGGACAGTTTGGCGTTGAAACCGCCCGAT
GAGGAAGGAAGCTGCCCTCCAAAAACACATGACCGACATCCCGGCTCTTC
ACCGTGGGGGGAACCAACAGATCAAATGGATGCCTCACCGTCAGCTCCTA
CTGCGGAATCCTCAACCGTCGCCACGGAATACGTGTCTCGCGCTCGAGCC
GAGGGAGCTACTACTAGTGTTCCAAACCCGGCGCCGCGGCAACAACATAC
GAGGGCATTATTTTCATCATCTCCATCTTCATCACCATCGCCGTCGCCCA
CGGGTAGATCGCTCAGTACGCCACCCCGTCGGGCTACCCTTATCCTTTCG
GACAGTTTGGCGTTGAAACCGCCCGATGAGGAAGGAAGCTGCCCTCCAAA
AACA
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