mRNA_E-fasciculatus_F_contig1508.3604.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3604.1
Unique NamemRNA_E-fasciculatus_F_contig1508.3604.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1508.3604.1 vs. uniprot
Match: A0A6H5KJJ5_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.050e-35
Identity = 72/90 (80.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:   43 VFNVTLSEEEARYLYQQLDSDHDGALGAEDLLRGATTVASFFANRQRISKDKVGRQRLGQKSALTRLAERNATLQNGEPICTMSTQFRRR 312
            ++ V LS EEAR LYQQLDSD DGALGAEDLLRGA+TVASFFANRQRISKDK GRQR GQKS L RLAERNATLQN EP   MSTQ R R
Sbjct:    4 MYPVDLSGEEARCLYQQLDSDRDGALGAEDLLRGASTVASFFANRQRISKDKAGRQREGQKSTLARLAERNATLQNDEP---MSTQIRSR 90
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJJ5_9PHAE7.050e-3580.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:9366..11051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size623
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.0269837-CDS-E-fasciculatus_F_contig1508:9365..94161622927987.0269837-CDS-E-fasciculatus_F_contig1508:9365..9416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9366..9416 +
1695995779.362666-CDS-E-fasciculatus_F_contig1508:9365..94161695995779.362666-CDS-E-fasciculatus_F_contig1508:9365..9416Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9366..9416 +
1622927987.0439687-CDS-E-fasciculatus_F_contig1508:9679..97851622927987.0439687-CDS-E-fasciculatus_F_contig1508:9679..9785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9680..9785 +
1695995779.3735244-CDS-E-fasciculatus_F_contig1508:9679..97851695995779.3735244-CDS-E-fasciculatus_F_contig1508:9679..9785Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9680..9785 +
1622927987.0585973-CDS-E-fasciculatus_F_contig1508:9970..100521622927987.0585973-CDS-E-fasciculatus_F_contig1508:9970..10052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9971..10052 +
1695995779.3832572-CDS-E-fasciculatus_F_contig1508:9970..100521695995779.3832572-CDS-E-fasciculatus_F_contig1508:9970..10052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 9971..10052 +
1622927987.07338-CDS-E-fasciculatus_F_contig1508:10431..105231622927987.07338-CDS-E-fasciculatus_F_contig1508:10431..10523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 10432..10523 +
1695995779.394026-CDS-E-fasciculatus_F_contig1508:10431..105231695995779.394026-CDS-E-fasciculatus_F_contig1508:10431..10523Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 10432..10523 +
1622927987.0854454-CDS-E-fasciculatus_F_contig1508:10561..105661622927987.0854454-CDS-E-fasciculatus_F_contig1508:10561..10566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 10562..10566 +
1695995779.4045734-CDS-E-fasciculatus_F_contig1508:10561..105661695995779.4045734-CDS-E-fasciculatus_F_contig1508:10561..10566Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 10562..10566 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927987.0983539-UTR-E-fasciculatus_F_contig1508:10566..105951622927987.0983539-UTR-E-fasciculatus_F_contig1508:10566..10595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1508 10567..10595 +
1695995779.4146104-UTR-E-fasciculatus_F_contig1508:10566..105951695995779.4146104-UTR-E-fasciculatus_F_contig1508:10566..10595Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1508 10567..10595 +
1622927987.108837-UTR-E-fasciculatus_F_contig1508:10793..110511622927987.108837-UTR-E-fasciculatus_F_contig1508:10793..11051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1508 10794..11051 +
1695995779.4244962-UTR-E-fasciculatus_F_contig1508:10793..110511695995779.4244962-UTR-E-fasciculatus_F_contig1508:10793..11051Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1508 10794..11051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3604.1prot_E-fasciculatus_F_contig1508.3604.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1508 9366..10566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1508.3604.1

>prot_E-fasciculatus_F_contig1508.3604.1 ID=prot_E-fasciculatus_F_contig1508.3604.1|Name=mRNA_E-fasciculatus_F_contig1508.3604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
VLKTTRDFAQTIRRVFNVTLSEEEARYLYQQLDSDHDGALGAEDLLRGAT
TVASFFANRQRISKDKVGRQRLGQKSALTRLAERNATLQNGEPICTMSTQ
FRRRLVLQNGG*
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mRNA from alignment at E-fasciculatus_F_contig1508:9366..11051+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1508.3604.1 ID=mRNA_E-fasciculatus_F_contig1508.3604.1|Name=mRNA_E-fasciculatus_F_contig1508.3604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1686bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:9366..11051+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTTGAAAACCACTAGGGATTTCGCGCAAACAATTCGACGGGTCTTCAA
TGTGGGTGGATAATACATTTAGTTACTCAAGTTGTTTCTTTCCTCCGATT
ACATCACTCTTCGACGAGGACATTTAAACCACTACCAGCATGTGACTTTA
AAGTTTGGGACGTTGAAAAACTAGCCCAGAAAGGGGATGTCACATGTGTC
ACACCTCTATTTTGTACCCGCTGAAATTCTGTCAGTGCACTCAGTGAATT
GGCCGTTGGTCCTGCGCCAGAGTATCCGTTCTGCTTACAAAGATATCCTG
GATGTGTCGAACAGGTTACCCTTAGCGAGGAAGAGGCGCGTTACCTCTAC
CAGCAGCTCGACTCGGATCACGACGGCGCTCTTGGAGCAGAAGACCTCTT
GAGGGGAGCCACCACCGTAGGTGCGGTGCTCCTCGATCTGGAAAGAGTCT
TCTCGACGCCCGTGCATGTGTTGGGACAGGAAGACTGGTAGACAGAACCT
TCGAGGATACGTGTAAACTTTAAAGAAGGTGTGGGTGCCTGAGGTATCCA
TGGTAGGAATATGGACCCTTAAATGACGCCCCTCCCACCGCTCCCTATTG
TTCAGCTTCTTTCTTCGCGAACCGGCAGCGGATCAGCAAGGACAAGGTGG
GCCGCCAAAGATTGGGGCAGAAAAGTGCGCTAACCAGGTACGACCAAAAC
CGAGAGAGCTGATATGCTAGAAACAGTTCTCGTCCCAGGACAGACTGGTT
TGCGGGCTATTTATCAGGGACGATATTTCGTCCACTCGGGTATCTTCCAA
CCTTGTTCAAGCAAAGAATGCAGCTACAAAATACCCCAACATATTCACTT
CCCGCGAAAATGGCTGTCTGTACCATGTACGTACGTGGTAGAAAGCAGGA
GGTACTTTGTTGATCGCGCCCAGCAACTTCCCGGACGTGAACGCCTTTGA
CCCTTTCCGTGCCAGCACAGAGTACCGGTTTGTGTGTTTTCAGGAGCGTG
CACAGCTGGGACGACCTACGACATCGCGCTTACCCTTCCGTTTCGTTTCT
TGTTCGTATTGAAAAGGTTGGCCGAGAGGAATGCTACGCTACAGAATGGC
GAACCAATATGTACGATGAGTACTCAATTTCGAAGAAGGCTCGTTCTACA
GAATGGAGGCGAAACAATCACGTCAAGTCGAGATACCCGTTTGGAGGCTG
AGGCGCAACACAACAACATATCTTCGGAAGGTGCTTCGCGCAGAATGATT
CGTTTCATCATCCTATTGTCCCATTGGTCAAAGCGCCTTTAGGGTCTTAC
GGGAAGAAGCGTGTCGGTGACTCATTGTTGTAGGTGTTGAATCTCAACCA
CCCTCTGCGAAAAAACGGTGAAACTTCCCCTAACCCTAATCCCCCCCCCC
ACATTTCCACCCATTGAATCCCCCACAGGTATCGACCACTACGAAGCTAC
CAAGAGGAGTCTTCTTTGATGGACAGACTAATCACCTAGCGCCACCCCGC
TGATTGTTGGTCCATGAGTACTCCGCCGTTGGAAAACTGGCGCACATCCT
AGTCTATGTAGTTGCGGGATGGCCCTGTCTGCGGCCAAAGCATGAAGGAA
GAATGGGAAACAGAAATTTGATACGATTTGTTAGGGCTGGTCATGCGGCT
TCGAAGACCGGCAGCGTTGTAACGTTTTGTTTTGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1508:9366..11051+

>mRNA_E-fasciculatus_F_contig1508.3604.1 ID=mRNA_E-fasciculatus_F_contig1508.3604.1|Name=mRNA_E-fasciculatus_F_contig1508.3604.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:9366..11051+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTTGAAAACCACTAGGGATTTCGCGCAAACAATTCGACGGGTCTTCAA
TGTTTTGAAAACCACTAGGGATTTCGCGCAAACAATTCGACGGGTCTTCA
ATGTTACCCTTAGCGAGGAAGAGGCGCGTTACCTCTACCAGCAGCTCGAC
TCGGATCACGACGGCGCTCTTGGAGCAGAAGACCTCTTGAGGGGAGCCAC
CACCGTAGGTTACCCTTAGCGAGGAAGAGGCGCGTTACCTCTACCAGCAG
CTCGACTCGGATCACGACGGCGCTCTTGGAGCAGAAGACCTCTTGAGGGG
AGCCACCACCGTAGCTTCTTTCTTCGCGAACCGGCAGCGGATCAGCAAGG
ACAAGGTGGGCCGCCAAAGATTGGGGCAGAAAAGTGCGCTAACCAGCTTC
TTTCTTCGCGAACCGGCAGCGGATCAGCAAGGACAAGGTGGGCCGCCAAA
GATTGGGGCAGAAAAGTGCGCTAACCAGGTTGGCCGAGAGGAATGCTACG
CTACAGAATGGCGAACCAATATGTACGATGAGTACTCAATTTCGAAGAAG
GCTCGTTCTACAGAATGGAGGTTGGCCGAGAGGAATGCTACGCTACAGAA
TGGCGAACCAATATGTACGATGAGTACTCAATTTCGAAGAAGGCTCGTTC
TACAGAATGGAGGCTGAGCTGA
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