mRNA_E-fasciculatus_F_contig1508.3602.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1508.3602.1
Unique NamemRNA_E-fasciculatus_F_contig1508.3602.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1508.3602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1508contigE-fasciculatus_F_contig1508:7513..8112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size348
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.9500134-CDS-E-fasciculatus_F_contig1508:7512..76311622927986.9500134-CDS-E-fasciculatus_F_contig1508:7512..7631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 7513..7631 +
1695995779.336771-CDS-E-fasciculatus_F_contig1508:7512..76311695995779.336771-CDS-E-fasciculatus_F_contig1508:7512..7631Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 7513..7631 +
1622927986.9704008-CDS-E-fasciculatus_F_contig1508:7885..81111622927986.9704008-CDS-E-fasciculatus_F_contig1508:7885..8111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 7886..8111 +
1695995779.3460486-CDS-E-fasciculatus_F_contig1508:7885..81111695995779.3460486-CDS-E-fasciculatus_F_contig1508:7885..8111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1508 7886..8111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1508.3602.1prot_E-fasciculatus_F_contig1508.3602.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1508 7513..8111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1508.3602.1

>prot_E-fasciculatus_F_contig1508.3602.1 ID=prot_E-fasciculatus_F_contig1508.3602.1|Name=mRNA_E-fasciculatus_F_contig1508.3602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
RFQQHQQQESIARTTVLARDARFYRDRQKASMTRLAQPTRPLRLVETSTR
GENSATNGNDPDLQAWHALFTETILAESSGLVDRPTAVKGPDGQWQGVPS
TRARGRKPVFTASNL
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mRNA from alignment at E-fasciculatus_F_contig1508:7513..8112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1508.3602.1 ID=mRNA_E-fasciculatus_F_contig1508.3602.1|Name=mRNA_E-fasciculatus_F_contig1508.3602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:7513..8112+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATTTCAACAACACCAGCAGCAGGAATCGATCGCCAGAACAACTGTATT
GGCGAGGGATGCTCGCTTCTACCGAGATCGGCAAAAAGCATCCATGACCC
GACTGGCTCAGCCTACACGGTAAGATGAACATCACTCAACCGGTACATAC
CTGTGCAAACGCCTGTGGGACACTCGGATGGCCACGCGATGATCACGAAT
GGTAGGTGTGCAAATTCGAGCATCGGATTTTCTCGATGAAGACATTGCCT
ACGAGCTTGCTCGGGTAATAAGTAACGACCAAATGGCAATCGTTACTGGG
TCTAGTTCTACATCAAACCTGCCTTCACCAACAGATTTTGTACCCTCGCC
CTCTTGCCTCCCATGCGTTCCAGGCCGCTTCGCCTGGTGGAAACATCCAC
CCGTGGGGAGAATTCTGCAACCAACGGCAACGATCCAGACCTACAAGCGT
GGCACGCGTTATTTACAGAAACTATTTTGGCTGAGTCTTCCGGCCTGGTG
GATCGCCCCACTGCAGTGAAAGGCCCGGACGGGCAATGGCAAGGGGTACC
ATCGACAAGGGCTCGAGGGAGAAAACCGGTGTTCACGGCCAGCAACCTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1508:7513..8112+

>mRNA_E-fasciculatus_F_contig1508.3602.1 ID=mRNA_E-fasciculatus_F_contig1508.3602.1|Name=mRNA_E-fasciculatus_F_contig1508.3602.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1508:7513..8112+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGATTTCAACAACACCAGCAGCAGGAATCGATCGCCAGAACAACTGTATT
GGCGAGGGATGCTCGCTTCTACCGAGATCGGCAAAAAGCATCCATGACCC
GACTGGCTCAGCCTACACGCGATTTCAACAACACCAGCAGCAGGAATCGA
TCGCCAGAACAACTGTATTGGCGAGGGATGCTCGCTTCTACCGAGATCGG
CAAAAAGCATCCATGACCCGACTGGCTCAGCCTACACGGCCGCTTCGCCT
GGTGGAAACATCCACCCGTGGGGAGAATTCTGCAACCAACGGCAACGATC
CAGACCTACAAGCGTGGCACGCGTTATTTACAGAAACTATTTTGGCTGAG
TCTTCCGGCCTGGTGGATCGCCCCACTGCAGTGAAAGGCCCGGACGGGCA
ATGGCAAGGGGTACCATCGACAAGGGCTCGAGGGAGAAAACCGGTGTTCA
CGGCCAGCAACCTCGCCGCTTCGCCTGGTGGAAACATCCACCCGTGGGGA
GAATTCTGCAACCAACGGCAACGATCCAGACCTACAAGCGTGGCACGCGT
TATTTACAGAAACTATTTTGGCTGAGTCTTCCGGCCTGGTGGATCGCCCC
ACTGCAGTGAAAGGCCCGGACGGGCAATGGCAAGGGGTACCATCGACAAG
GGCTCGAGGGAGAAAACCGGTGTTCACGGCCAGCAACCTC
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