mRNA_E-fasciculatus_F_contig15072.3596.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15072.3596.1
Unique NamemRNA_E-fasciculatus_F_contig15072.3596.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: D7G0J9_ECTSI (PKD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.720e-19
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------AQGLTDYGESQIFAADWFGDASPDNSLHTVDNGR 159
            MHLDGAGVSDCDHWHDDA                                   +QGLTDYGESQIFA DWFGDASP+N++HTVDNGR
Sbjct:  235 MHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPSVTIPYWEYTIEYSQGLTDYGESQIFAPDWFGDASPNNAMHTVDNGR 321
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A6H5L3M0_9PHAE (PKD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.170e-19
Identity = 47/87 (54.02%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDA----------------------------------DAQGLTDYGESQIFAADWFGDASPDNSLHTVDNGR 159
            MHLDGAGV DCDHWHDDA                                   AQGLT+YGES IFAADWFG+ASPDNSLHTVD GR
Sbjct:  233 MHLDGAGVKDCDHWHDDAGIMTHHVGYTLQFEQALQVVDPSVSIPYWEYTIESAQGLTEYGESTIFAADWFGEASPDNSLHTVDKGR 319
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A6H5KFJ6_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ6_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.670e-18
Identity = 46/90 (51.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD-------------------------------------AQGLTDYGESQIFAADWFGDASPDNSLHTVDNGR 159
            MHLDGAGVSDCDHWHDDA                                      +QGLTDYGESQIF  DWFGDASP+N++HTVDNGR
Sbjct:  145 MHLDGAGVSDCDHWHDDAGIMTHHVGYTMLFEQALQVVDPAVTIPYWEYTIECGCHSQGLTDYGESQIFDPDWFGDASPNNAMHTVDNGR 234
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: D7FSP4_ECTSI (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSP4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 3.680e-15
Identity = 41/87 (47.13%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------AQGLTDYGESQIFAADWFGDASPDNSLHTVDNGR 159
            MHL+GAGVSDCDHWHDDA                                   A GL DY  S++FA+DWFG+ASPDN LHTVD GR
Sbjct:  248 MHLNGAGVSDCDHWHDDAGIMTHHVGYTLLFEQALQVVDPAVTIPYWEYTIEAAAGLEDYDSSEVFASDWFGEASPDNELHTVDKGR 334
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: D7G0K0_ECTSI (Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.490e-13
Identity = 40/87 (45.98%), Postives = 44/87 (50.57%), Query Frame = 1 
Query:    1 MHLDGAGVSDCDHWHDDAD----------------------------------AQGLTDYGESQIFAADWFGDASPDNSLHTVDNGR 159
            MHLDGA V +CDHWHDDA                                   A GL +YGESQ+F   WFGDASPDNSLHTV +GR
Sbjct:   88 MHLDGAAVKECDHWHDDAGIVTHHVGFTLLFEQALQVVDPSVSIPYWEYTIEAALGLANYGESQVFHPGWFGDASPDNSLHTVTDGR 174
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: D7G0J8_ECTSI (Putative scytonemin-related tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J8_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.640e-10
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:  156 PDSWDYVHNPYGLLRTPWNTDPTPYVTRHN 245
            PD+WD VHNPYGLLR+PWN +PTP+VTRHN
Sbjct:  328 PDAWDSVHNPYGLLRSPWNLNPTPFVTRHN 357
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A6H5LKB4_9PHAE (TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LKB4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.020e-9
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 3 
Query:  159 DSWDYVHNPYGLLRTPWNTDPTPYVTRHN 245
            D+WD VHNPYGLLR+PWN D TP+VTRHN
Sbjct:  329 DAWDSVHNPYGLLRSPWNVDDTPFVTRHN 357
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A7S2B036_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B036_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.120e-5
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  159 DSWDYVHNPYGLLRTPWNTDPTPYVTRHNM 248
            + W  +HNPYGLLR+PWNT+  PY TR+++
Sbjct:   93 EEWSEIHNPYGLLRSPWNTNSVPYFTRYDL 122
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BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A7S2AZT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZT7_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.220e-5
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 3 
Query:  159 DSWDY--VHNPYGLLRTPWNTDPTPYVTRHN 245
            D+W Y  + NPYGLLR+PWNT+P PYV R N
Sbjct:   33 DAWHYSNITNPYGLLRSPWNTNPVPYVMRSN 63
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Match: A0A7S2AZS3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AZS3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.530e-5
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 3 
Query:  174 VHNPYGLLRTPWNTDPTPYVTRHN 245
            + NPYGLLR+PWNTD TPYV RHN
Sbjct:   79 ITNPYGLLRSPWNTDSTPYVMRHN 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15072.3596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G0J9_ECTSI1.720e-1954.02PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3M0_9PHAE8.170e-1954.02PKD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KFJ6_9PHAE2.670e-1851.11TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FSP4_ECTSI3.680e-1547.13PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G0K0_ECTSI1.490e-1345.98Tyrosinase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G0J8_ECTSI3.640e-1080.00Putative scytonemin-related tyrosinase n=1 Tax=Ect... [more]
A0A6H5LKB4_9PHAE6.020e-979.31TYR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A7S2B036_9STRA1.120e-556.67Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2AZT7_9STRA1.220e-564.52Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2AZS3_9STRA3.530e-579.17Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15072contigE-fasciculatus_F_contig15072:228..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3e-16
Seed eggNOG ortholog2880.D7G0J9
EggNOG free text desc.Common central domain of tyrosinase
EggNOG OGs2D2AI@1,2SM4K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003010.1
Exons3
Model size249
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15072.3596.1prot_E-fasciculatus_F_contig15072.3596.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15072 228..1728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927986.5273564-CDS-E-fasciculatus_F_contig15072:227..3181622927986.5273564-CDS-E-fasciculatus_F_contig15072:227..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 228..318 -
1695995779.1732879-CDS-E-fasciculatus_F_contig15072:227..3181695995779.1732879-CDS-E-fasciculatus_F_contig15072:227..318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 228..318 -
1622927986.53843-CDS-E-fasciculatus_F_contig15072:890..9931622927986.53843-CDS-E-fasciculatus_F_contig15072:890..993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 891..993 -
1695995779.1858687-CDS-E-fasciculatus_F_contig15072:890..9931695995779.1858687-CDS-E-fasciculatus_F_contig15072:890..993Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 891..993 -
1622927986.5492337-CDS-E-fasciculatus_F_contig15072:1673..17281622927986.5492337-CDS-E-fasciculatus_F_contig15072:1673..1728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 1674..1728 -
1695995779.2000487-CDS-E-fasciculatus_F_contig15072:1673..17281695995779.2000487-CDS-E-fasciculatus_F_contig15072:1673..1728Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15072 1674..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15072.3596.1

>prot_E-fasciculatus_F_contig15072.3596.1 ID=prot_E-fasciculatus_F_contig15072.3596.1|Name=mRNA_E-fasciculatus_F_contig15072.3596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=83bp
MHLDGAGVSDCDHWHDDADAQGLTDYGESQIFAADWFGDASPDNSLHTVD
NGRTRGTTCTTHTAFCVPPGTPTRRRTSPATT*
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mRNA from alignment at E-fasciculatus_F_contig15072:228..1728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15072.3596.1 ID=mRNA_E-fasciculatus_F_contig15072.3596.1|Name=mRNA_E-fasciculatus_F_contig15072.3596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1501bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15072:228..1728- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACCTGGACGGCGCTGGCGTGAGCGACTGCGATCACTGGCACGATGA
TGCTGGTAGGTGGCTCGTAGAACAGGGGCGAGCCTTCGTTGCGAATCAAG
TGCAGCAGTGCATGCAGTCCGGTTGGCCCAGTCTCGAACGAGTTGGCACA
CGCTAGGATCATGTAGTGTTGAATATGCCCCATTCTATCCACGCCTTGAT
GCGGTCGGTTACTTTGATCACGTGTATGTTTCATTGAAGTTGGACTGTGA
AACGTCGACCTGCCTTCGTTTTTGTGGCTTGCGATGCGGGGCCGCCCGTC
CGTCTAAACGTTGGTCTTCTCTGGCAGGTATCATGACGCACCACGTGGGG
TACACCATGCTGTTCGAGCAGGCTCTGCAGGTGGTCAATCCCGCCGTCAC
TGTTCCCTACTGGGAGTACACCATCGAATGTGGGTACCGTAAAAGCTGGG
GAATGACGTTCTCTCTCTCTCTGTTTGGTTTCGCTGGGTCCCATGGAACG
GACTGGATTTTAAGAGTCCCACCGGCAGTTTGTTGCACGTTCGTCGATGG
CTTATTTTGAGTCGTCGCGTGAAAGATCCCAACGGTTTATAGATGGAGAT
GGGGTTCGTTGTGCTATGAATGTATCATGAATAACAATGTTACATGAATA
AATCATGTTGTGTACTTACGGTTACCGTTTTTTCTTTTTCATCGGCAACA
TGGTTGATCGTTCGTGGGCGTCGTCGTTGTTGCAGACGCACAAGGGCTGA
CGGACTACGGGGAGTCGCAGATCTTCGCGGCCGACTGGTTTGGCGACGCC
TCCCCCGACAACTCGCTGCACACCGTCGACAACGGCCGGTGGGCCTACCT
CCCAGTGATGCAGGCGAGTACCGCCATTGTAGTGCTGCACGTTGATTGGT
TTACCATATCTATCCGTTCAACAGTCGGTACCGTTTAGATACCACGGGGT
CTGTTCGTTCCCGTTGAACGTGTGTGCGTGGGTCCAGCGTGAGATTTTGG
CTCTTGCTTTGTGCCGGTGTTGGTTGTTGTTCTGCTGCCGCGCTGGTGGT
GGTGGCGGTCGTTGTGCTGTACTTTTTGCTCGACACAGCCCAAGCGCGCT
CTTTGTTTTCCTGGCCATTGCTCTGCTTTTTTCGAGCGTGCCCTCGCGGG
CTCTCCCTCGTTCTGCTCTTGAGAATTCATCTACTCGGGCGAGACGTGTC
ACGCAGTATACATCCAAGGAAACTCCTCATATTTGCGCGCTGGTGATGAC
AGGCTTCATCAGCAGCTATTTTCTAACAAGTTGGTCTTCATGTATTGCGT
ACTAATACGTTGCGTACGTGCAAAAGTATGTTGTACTCACTCCGCTCTTC
GTCGGTACTCACTCCGCTCTTCGTCGGCGCCTCTTCGTGCCTGATATTCG
TGTGTCGCAGGACTCGTGGGACTACGTGCACAACCCATACGGCCTTCTGC
GTACCCCCTGGAACACCGACCCGACGCCGTACGTCACCCGCCACAACATG
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15072:228..1728-

>mRNA_E-fasciculatus_F_contig15072.3596.1 ID=mRNA_E-fasciculatus_F_contig15072.3596.1|Name=mRNA_E-fasciculatus_F_contig15072.3596.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15072:228..1728- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACCTGGACGGCGCTGGCGTGAGCGACTGCGATCACTGGCACGATGA
TGCTGATGCACCTGGACGGCGCTGGCGTGAGCGACTGCGATCACTGGCAC
GATGATGCTGACGCACAAGGGCTGACGGACTACGGGGAGTCGCAGATCTT
CGCGGCCGACTGGTTTGGCGACGCCTCCCCCGACAACTCGCTGCACACCG
TCGACAACGGCCGACGCACAAGGGCTGACGGACTACGGGGAGTCGCAGAT
CTTCGCGGCCGACTGGTTTGGCGACGCCTCCCCCGACAACTCGCTGCACA
CCGTCGACAACGGCCGGACTCGTGGGACTACGTGCACAACCCATACGGCC
TTCTGCGTACCCCCTGGAACACCGACCCGACGCCGTACGTCACCCGCCAC
AACATGAGACTCGTGGGACTACGTGCACAACCCATACGGCCTTCTGCGTA
CCCCCTGGAACACCGACCCGACGCCGTACGTCACCCGCCACAACATGA
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