mRNA_E-fasciculatus_F_contig15064.3589.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15064.3589.1
Unique NamemRNA_E-fasciculatus_F_contig15064.3589.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15064.3589.1 vs. uniprot
Match: D7FYY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYY2_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.210e-86
Identity = 138/166 (83.13%), Postives = 150/166 (90.36%), Query Frame = 1 
Query:    1 IDALLETIKDEQFISHFAEPGVMADLAQNSGLSAMLGDEGMASVERDDLLALLALEDSPILYKTKFYEIVDKFIGKMVAFRMDVADPVKLRRLVMETLQAVGLDQPTIAQIMDVVEHPEIMAQQIKAMASDPTVIQQAKAAAESWMTGMEQVNDMDLDDEEVWPCL 498
            ID  LETIKDEQFIS FAEPGV+ +LAQNSGLSA+LG++GMASVERDDLLALLALEDSPILYKTKFYEIVDKFIGK VAFRMDVA+PVKLRRLV+ETLQA GLDQP I QIM+VVEHPEIMAQQIKAMASDP VI+QAKAAAE +MTGME  NDMD DD+E+   L
Sbjct:   97 IDMFLETIKDEQFISQFAEPGVLGELAQNSGLSALLGEDGMASVERDDLLALLALEDSPILYKTKFYEIVDKFIGKTVAFRMDVANPVKLRRLVLETLQAAGLDQPMITQIMEVVEHPEIMAQQIKAMASDPAVIEQAKAAAEGFMTGMEVGNDMDYDDDELMEML 262
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15064.3589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYY2_ECTSI1.210e-8683.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15064contigE-fasciculatus_F_contig15064:250..3136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002920.1
Exons6
Model size507
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15064.3589.1prot_E-fasciculatus_F_contig15064.3589.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15064 250..3136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.5961466-CDS-E-fasciculatus_F_contig15064:249..3451622927985.5961466-CDS-E-fasciculatus_F_contig15064:249..345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 250..345 -
1695995778.872563-CDS-E-fasciculatus_F_contig15064:249..3451695995778.872563-CDS-E-fasciculatus_F_contig15064:249..345Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 250..345 -
1622927985.608358-CDS-E-fasciculatus_F_contig15064:738..8191622927985.608358-CDS-E-fasciculatus_F_contig15064:738..819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 739..819 -
1695995778.8804662-CDS-E-fasciculatus_F_contig15064:738..8191695995778.8804662-CDS-E-fasciculatus_F_contig15064:738..819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 739..819 -
1622927985.6208198-CDS-E-fasciculatus_F_contig15064:1290..14061622927985.6208198-CDS-E-fasciculatus_F_contig15064:1290..1406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 1291..1406 -
1695995778.89409-CDS-E-fasciculatus_F_contig15064:1290..14061695995778.89409-CDS-E-fasciculatus_F_contig15064:1290..1406Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 1291..1406 -
1622927985.6317673-CDS-E-fasciculatus_F_contig15064:1767..18371622927985.6317673-CDS-E-fasciculatus_F_contig15064:1767..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 1768..1837 -
1695995778.9062393-CDS-E-fasciculatus_F_contig15064:1767..18371695995778.9062393-CDS-E-fasciculatus_F_contig15064:1767..1837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 1768..1837 -
1622927985.6433425-CDS-E-fasciculatus_F_contig15064:2721..28291622927985.6433425-CDS-E-fasciculatus_F_contig15064:2721..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 2722..2829 -
1695995778.920512-CDS-E-fasciculatus_F_contig15064:2721..28291695995778.920512-CDS-E-fasciculatus_F_contig15064:2721..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 2722..2829 -
1622927985.6536176-CDS-E-fasciculatus_F_contig15064:3100..31361622927985.6536176-CDS-E-fasciculatus_F_contig15064:3100..3136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 3101..3136 -
1695995778.9304438-CDS-E-fasciculatus_F_contig15064:3100..31361695995778.9304438-CDS-E-fasciculatus_F_contig15064:3100..3136Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15064 3101..3136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15064.3589.1

>prot_E-fasciculatus_F_contig15064.3589.1 ID=prot_E-fasciculatus_F_contig15064.3589.1|Name=mRNA_E-fasciculatus_F_contig15064.3589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
IDALLETIKDEQFISHFAEPGVMADLAQNSGLSAMLGDEGMASVERDDLL
ALLALEDSPILYKTKFYEIVDKFIGKMVAFRMDVADPVKLRRLVMETLQA
VGLDQPTIAQIMDVVEHPEIMAQQIKAMASDPTVIQQAKAAAESWMTGME
QVNDMDLDDEEVWPCLLL*
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mRNA from alignment at E-fasciculatus_F_contig15064:250..3136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15064.3589.1 ID=mRNA_E-fasciculatus_F_contig15064.3589.1|Name=mRNA_E-fasciculatus_F_contig15064.3589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2887bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15064:250..3136- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGACGCGCTTCTGGAGACCATCAAGGACGAACAGGTGAGCACGGAAGA
TGGGATCGATTTTGTACATGTAGGGCGCAAAGCGTGAATCGCCTTTCCCC
TGGTGACTGGGTAGATTGATCCTTGACGCGACGAACGCCTCCTTTCCTCT
CTGGGCGCGTTTCCCCCCCGCGCGTGCCTGCCTCTCTGTCCCACGCTGCC
TGCCCGTCCCTAACCCTCTCTCTCGCGCGCGTTCTCGCTCTCGCTCTCGC
CCCCATCTCTCCCTCTTTTCTACCTCTCTCTTGTCCTGGTTGTGCTCAAA
ACACCAGTTTATCAGCCATTTTGCGGAGCCGGGAGTGATGGCGGACCTTG
CTCAGAACTCCGGTCTGAGCGCAATGCTAGGGGATGAGGGCATGGCCTCT
GTGGAGAGAGATGATGTGAGAGTCCCGTATTGATGACCTGTTCCGCTTTT
TACTAACCGTATACCGCGCGTTGATTTCCAGCAGCAAAGGATTAAACTAA
ACTGTAAAGCACGAACGCTGGCGGTTGCGTGGGGGGGTTGCTGAAAGAAT
GGTTGCTGCACGTGTAGGAGAGCGCGCATGGAGGGAGATCCGCAGGATTC
GAGGTCTAGAGAAGCCGTCGTTGTGCGTGTGGGGTGTGTGCATGTTTTTT
ATTGTAGCAGGTGTGTCGTGCCAGAGTTTCTTTGCAAATCAGTATTACAT
ATCCCGCGACACTGCTTTTGCGGTATATGTCATCTGTTTCCCCGAACGGC
CCCGTGCGTGGTTGCCAGTTATTTTCCGCGCCAAACCCTGCTGTTCACCA
TACCGGTGCCGTTTAACCTTGCCGTGCCGTGATTCACCTTCACGACGGGC
CGCATCGCATCGCACCGTTGGTGCGAGACATGGGGACACGCCCTGTCGAA
GGGTCTTCTTCTGCTAAGCAGCGAATACCCTTGCGCCGTATGCACCGCTG
TTGAACGGCCGCTCTTCTTGAAAGATTCCATTGGTTTGAGAGAAGGGAGT
GCAGAGATGGATGTGGAACCCGCGCCTTCTCTTTACACACTGCACAGTGT
ACCCCCGCTGTGACCTGCCACTGCTCTGGTCCTGCTGTTACTGAGATGTT
TTTCTATGGTACCACATTATTACGGTGTCCCCGGTGACGGTGTTCTTGAT
GGTACCACATATTTTTATAGTTTTTTTATCGGGAAAGTCATTTTTTTTTT
TTCTGATCCGTGTACGACCCTTTTTCTCCTCATCCTCATCTTTCGCCCCG
TCATTTCTTCCGGTGCCATCGTATCGTATATGTTGTTCTTCCCTCTTAGC
TGTTGGCGCTCCTGGCTTTGGAGGACAGCCCTATCCTCTACAAGACCAAG
TTTTATGAGATCGTGGACAGTGAGTACGACAAAACCGAGGGAGAGAGAGG
AGGGGTAACGTTTTGAAGAGGCATGGCGGTGCATAGGGTATCCCACAGAG
TCTCGCCTGATTTTCCATGCAGGGGGGTTGACGAGAGCACTGCAAACCAT
CCAGATCAAGAGAGAGAACCTTCGTTGTGCCCCCACGCCATTTCCTCCCC
TCTCGCTTTCAACGGGGCCTCCCCTCTGTCATTCGTAGAACATGATTCGA
GCGTCCTTACTCTATGGCACAACAAATTCCTCCCCTTGCACAGACGAGAG
TCTGGGATACATTGAATTTCATAGCGTCCCCTTGTCAAATCATCCGGCTT
TCGCTTTGTTTTGTGTTGTTGCGTTTTCAGAGTTCATCGGGAAAATGGTG
GCCTTCCGAATGGACGTCGCCGACCCTGTGAAGCTGCGGCGCTTGGTGAT
GGAAACGCTGCAGGCTGTCGGACTCGATCAACCAACGATTGCCCAGGTGT
GCTGGAGGTTGAATGGATGTTTTAAGTGCGCACGGTCATTCCGTCCAGCT
GAACAGCGCAGCAGTACGGAGGGGTAAGTGTTGTAGCTGCAGGGCAGTTT
GGTACGATCCGGTGTACCCCCGTTTTTTTCTGTGGTGGTTATGTCCTCAC
GTTGACAATTTCTCTGACCTTTGTCTGCTATAATTTCGGATTTTTCTCGC
TACGGAACCGGTCTCTTGCATCCTGGGTGGTTTTGGCAACCCGGTTCGTT
GGCGCGGTATGGTCTGGTCTGGTGGCCGGTATTTCCTAGACCTTGTGTGG
GAACTCCGGCTGAGCCGAGGGCACAAAGTGTGCAGGTAATAACGGCGCTT
CCGCATTCTGTTCTCGGCAAAGAAATACAACGATGTAGTATTGCTTTCTT
TTTTTTCTTTTTTTTTGTTCATGGAAGTTTTTTCTGGGTGACATCCTTGC
TTTTGTCCGTCGGGCAGATCATGGACGTCGTGGAGCACCCGGAGATCATG
GCTCAGCAGATCAAGGCGATGGCCTCCGACCCCACCGTTATACAGCAGGT
AAGAACGACTACCACGCGCCTGTGCTGTGTTTTGTTCGAGCGTGTCCGTC
CGTGTGTGTCATGGCGGTTGTTGGTCGTTAAATTAGCTTGACGTGGTTCC
CCGGCGCCTGCTTGCCCGTGCGTCGACTCGACTCGTTTTTTTTTGCCCTG
GTTGTTTCTTGGAACGTTTGCGAATTTTTTGTCCGCACTCCTCGCGGGCG
CGCGTTCGTCTGTTGTGTCTTGCTGTTGGCCATGTCGCGGCGACGGCCGC
TCCCTCGACCTTGACATCCAACGTATTCATGGCTCTCTCTGTTTCCGTTT
TTGTTTTGTTTTTGCCTTAAACAACACTCTCCTTGACCTCCCTTGCCCTC
CCGGCCCCTCTCCCGTACCCACGAAACGGTACGGTACACAGGCCAAAGCA
GCCGCGGAGAGCTGGATGACTGGAATGGAGCAAGTGAACGATATGGACTT
GGATGACGAAGAGGTATGGCCGTGCCTGCTTCTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15064:250..3136-

>mRNA_E-fasciculatus_F_contig15064.3589.1 ID=mRNA_E-fasciculatus_F_contig15064.3589.1|Name=mRNA_E-fasciculatus_F_contig15064.3589.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15064:250..3136- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCGACGCGCTTCTGGAGACCATCAAGGACGAACAGATCGACGCGCTTCT
GGAGACCATCAAGGACGAACAGTTTATCAGCCATTTTGCGGAGCCGGGAG
TGATGGCGGACCTTGCTCAGAACTCCGGTCTGAGCGCAATGCTAGGGGAT
GAGGGCATGGCCTCTGTGGAGAGAGATGATTTTATCAGCCATTTTGCGGA
GCCGGGAGTGATGGCGGACCTTGCTCAGAACTCCGGTCTGAGCGCAATGC
TAGGGGATGAGGGCATGGCCTCTGTGGAGAGAGATGATCTGTTGGCGCTC
CTGGCTTTGGAGGACAGCCCTATCCTCTACAAGACCAAGTTTTATGAGAT
CGTGGACACTGTTGGCGCTCCTGGCTTTGGAGGACAGCCCTATCCTCTAC
AAGACCAAGTTTTATGAGATCGTGGACAAGTTCATCGGGAAAATGGTGGC
CTTCCGAATGGACGTCGCCGACCCTGTGAAGCTGCGGCGCTTGGTGATGG
AAACGCTGCAGGCTGTCGGACTCGATCAACCAACGATTGCCCAGAGTTCA
TCGGGAAAATGGTGGCCTTCCGAATGGACGTCGCCGACCCTGTGAAGCTG
CGGCGCTTGGTGATGGAAACGCTGCAGGCTGTCGGACTCGATCAACCAAC
GATTGCCCAGATCATGGACGTCGTGGAGCACCCGGAGATCATGGCTCAGC
AGATCAAGGCGATGGCCTCCGACCCCACCGTTATACAGCAGATCATGGAC
GTCGTGGAGCACCCGGAGATCATGGCTCAGCAGATCAAGGCGATGGCCTC
CGACCCCACCGTTATACAGCAGGCCAAAGCAGCCGCGGAGAGCTGGATGA
CTGGAATGGAGCAAGTGAACGATATGGACTTGGATGACGAAGAGGTATGG
CCGTGCCTGCTTCTTTGAGCCAAAGCAGCCGCGGAGAGCTGGATGACTGG
AATGGAGCAAGTGAACGATATGGACTTGGATGACGAAGAGGTATGGCCGT
GCCTGCTTCTTTGA
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