mRNA_E-fasciculatus_F_contig1506.3586.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1506.3586.1 vs. uniprot
Match: D7FGY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY1_ECTSI) HSP 1 Score: 544 bits (1402), Expect = 2.170e-188 Identity = 276/302 (91.39%), Postives = 285/302 (94.37%), Query Frame = 1
Query: 604 SFVRNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDVECDLKMVAEGFIGEHEEQEQQRHVNVLTDARQQSSSSCHCHRSEGVDMPPLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFGSLSERIEAARLSKDTLDHPLILPLAKMVENELRVVSFAVRAIHLQETSFVQHQEFVLCQMELRNAITTWEGGHHGQVLCRRVKAILMARNGGHEGPHALQRGSTKGLSFKSPLFFSYSDGTVSQEAVANGITGLEGTTTHFAFSIG 1509
SFV+NIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLD+KLLD+ECDLKMVAEGFIGEHEEQ QR ++V+TDARQ SS CHCHRSEGV MPPLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFG LSERIEA R SKDTLDHPLILPLA+MVE+ELRVVSFAVRAIHLQETSFVQ QEFVLCQMELRNAITTWE GH GQVLCRRVKAILMARNGGHEGP LQRGSTKGLSFKSPLFFSYSDGTVSQEAV NGI GLEGTTT+FAFSIG
Sbjct: 16 SFVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDEKLLDIECDLKMVAEGFIGEHEEQ--QRQMDVMTDARQYSS--CHCHRSEGVGMPPLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFGRLSERIEAVRRSKDTLDHPLILPLARMVESELRVVSFAVRAIHLQETSFVQLQEFVLCQMELRNAITTWERGHLGQVLCRRVKAILMARNGGHEGPPVLQRGSTKGLSFKSPLFFSYSDGTVSQEAVVNGIDGLEGTTTNFAFSIG 313
BLAST of mRNA_E-fasciculatus_F_contig1506.3586.1 vs. uniprot
Match: A0A6H5JIA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIA1_9PHAE) HSP 1 Score: 469 bits (1207), Expect = 3.750e-158 Identity = 237/261 (90.80%), Postives = 246/261 (94.25%), Query Frame = 1
Query: 604 SFVRNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDVECDLKMVAEGFIGEHEEQEQQRHVNVLTDARQQSSSSCHCHRSEGVDMPPLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFGSLSERIEAARLSKDTLDHPLILPLAKMVENELRVVSFAVRAIHLQETSFVQHQEFVLCQMELRNAITTWEGGHHGQVLCRRVKAILMARNGGHEGPHALQRGSTK 1386
SFV+NIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLD+ECDLKMVAEGFIGEHEEQ QRH++V+TDARQ SS CHCHRSEGV MP LDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEF SL +RIEAAR SKDTLDH LILPLA+M ENELRVVSFAVRAIHLQETSFVQ Q+FVLCQMELR+AITTWEGGH GQVLCRRVKAILMARNGGHEGP ALQRGSTK
Sbjct: 15 SFVQNIADFKHHEAGLAILPDYSRQRTHDELRGNPWIAACAPLLLFCSVERMLMNADLEDQLDDKLLDIECDLKMVAEGFIGEHEEQ--QRHMDVMTDARQHSS--CHCHRSEGVGMPSLDVLLEFLRQMGVVVKVRRHLLHAWRRVMLFGDVEFVSLCQRIEAARRSKDTLDHQLILPLARMFENELRVVSFAVRAIHLQETSFVQRQDFVLCQMELRDAITTWEGGHLGQVLCRRVKAILMARNGGHEGPLALQRGSTK 271 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1506.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1506.3586.1 >prot_E-fasciculatus_F_contig1506.3586.1 ID=prot_E-fasciculatus_F_contig1506.3586.1|Name=mRNA_E-fasciculatus_F_contig1506.3586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=360bp MFGGLCVCLLQYSKVFDVLSVSFQIAEIFLPCESHMRVPLNPSIHRCMAWback to top mRNA from alignment at E-fasciculatus_F_contig1506:7606..15294- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1506.3586.1 ID=mRNA_E-fasciculatus_F_contig1506.3586.1|Name=mRNA_E-fasciculatus_F_contig1506.3586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=7689bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1506:7606..15294- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1506:7606..15294- >mRNA_E-fasciculatus_F_contig1506.3586.1 ID=mRNA_E-fasciculatus_F_contig1506.3586.1|Name=mRNA_E-fasciculatus_F_contig1506.3586.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2160bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1506:7606..15294- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |