mRNA_E-fasciculatus_F_contig15058.3584.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15058.3584.1
Unique NamemRNA_E-fasciculatus_F_contig15058.3584.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15058.3584.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 5.080e-153
Identity = 294/361 (81.44%), Postives = 298/361 (82.55%), Query Frame = 1 
Query:    1 PLAARSLSQASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDRPARGAAA-EPGARASLMQLALIVLTGFLRVDGDQPAAAA-GQVDEAAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCRPGPAPDLNRNGGGGDGIAKDMIEAGGLRALWRACSDPSPMARPVALEALATMLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXTSALLALHFLAANPDPAVHGLFVAAAGVDEQQGGATRG---GSTWSMILSCVEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLG 1068
            P +A     ASIIDPLLGMLAGGT+KDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLED PARGAAA EP  RASLMQLALIVLTGFLR DGDQPAAAA  +VDE AAEIAATRAHVRVVALLSAPDPKLRFT AELALQLSRRCRPGPAP+ NR GGGG  IAKDMIEAGGL ALWRACSDPSPMARPVALEALA MLGTAAAMSRS ASSEAVLALVSEGAV GLVRQHVDPALSVLG                        XXX  TSALLALHFLAANPDPAVHGLFV AAGVDEQ           STWS ILS VEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLG
Sbjct:  318 PRSAIEAVDASIIDPLLGMLAGGTSKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAEPVTRASLMQLALIVLTGFLRGDGDQPAAAAEAKVDEIAAEIAATRAHVRVVALLSAPDPKLRFTTAELALQLSRRCRPGPAPNSNRGGGGG--IAKDMIEAGGLGALWRACSDPSPMARPVALEALAAMLGTAAAMSRSRASSEAVLALVSEGAVEGLVRQHVDPALSVLGR-RGRGVAGGGSATIPGDAAAAATXXXVATSALLALHFLAANPDPAVHGLFVVAAGVDEQXXXXXXXXXXSSTWSTILSSVEAGAEGRGGPAFLEAALLAAGSVCGAPPLPVLG 675
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BLAST of mRNA_E-fasciculatus_F_contig15058.3584.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.010e-112
Identity = 218/250 (87.20%), Postives = 220/250 (88.00%), Query Frame = 1 
Query:    1 PLAARSLSQASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDRPARGAAA---EPGARASLMQLALIVLTGFLRVDGDQPAAAA--GQVDEAAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCRPGPAPDLNRNGGGGDGIAKDMIEAGGLRALWRACSDPSPMARPVALEALATMLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLG 735
            P +A     ASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLED PARGAAA   EP ARASLMQLALIVLTGFLR DGDQPAA A  G+VDE AAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCRPGPA           GIAKDMIEAGGL ALW ACSDPSPMARPVALEALA MLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLG
Sbjct:  484 PRSAIETVDASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGRLRAAGTIPAVAACLEDHPARGAAAAAAEPVARASLMQLALIVLTGFLRGDGDQPAAVAATGEVDEVAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRCRPGPAXXXXXXXXX-XGIAKDMIEAGGLGALWSACSDPSPMARPVALEALAAMLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLG 732
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15058.3584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE5.080e-15381.44FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FT64_ECTSI1.010e-11287.20E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15058contigE-fasciculatus_F_contig15058:1868..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.9
Seed ortholog evalue2.1e-101
Seed eggNOG ortholog2880.D7FT64
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1115
Cds size1113
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927985.0666523-CDS-E-fasciculatus_F_contig15058:1869..29821622927985.0666523-CDS-E-fasciculatus_F_contig15058:1869..2982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15058 1870..2982 -
1695995778.6330075-CDS-E-fasciculatus_F_contig15058:1869..29821695995778.6330075-CDS-E-fasciculatus_F_contig15058:1869..2982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15058 1870..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15058.3584.1prot_E-fasciculatus_F_contig15058.3584.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15058 1870..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15058.3584.1

>prot_E-fasciculatus_F_contig15058.3584.1 ID=prot_E-fasciculatus_F_contig15058.3584.1|Name=mRNA_E-fasciculatus_F_contig15058.3584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=371bp
PLAARSLSQASIIDPLLGMLAGGTNKDAHASALAMELLVVLASHPPFSGR
LRAAGTIPAVAACLEDRPARGAAAEPGARASLMQLALIVLTGFLRVDGDQ
PAAAAGQVDEAAAEIAATRAHVRVVALLSAPDPKLRFTAAELALQLSRRC
RPGPAPDLNRNGGGGDGIAKDMIEAGGLRALWRACSDPSPMARPVALEAL
ATMLGTAAAMSRSSASSEAVLALVSEGAVGGLVRQHVDPALSVLGGGGRG
RGVAGGGGSATAPGEAAAAAAAAATSALLALHFLAANPDPAVHGLFVAAA
GVDEQQGGATRGGSTWSMILSCVEAGAEGRGGPAFLEAALLAAGSVCGAP
PLPVLGGGGGAAAAVVPMGLA
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mRNA from alignment at E-fasciculatus_F_contig15058:1868..2982-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15058.3584.1 ID=mRNA_E-fasciculatus_F_contig15058.3584.1|Name=mRNA_E-fasciculatus_F_contig15058.3584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1115bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15058:1868..2982- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCTTGCGGCCCGGTCTCTCTCGCAGGCGAGTATCATCGACCCCCTGCT
CGGAATGCTGGCCGGCGGCACGAACAAAGATGCCCACGCCTCCGCCCTGG
CCATGGAACTCCTGGTCGTCCTGGCTTCTCACCCCCCCTTCTCCGGCCGG
CTCCGCGCGGCCGGCACCATCCCCGCCGTGGCGGCCTGTCTGGAGGACCG
CCCCGCTAGGGGCGCGGCGGCAGAGCCCGGGGCCAGGGCCTCGTTAATGC
AGCTCGCGCTCATCGTTCTTACCGGCTTTCTGCGTGTCGACGGGGATCAA
CCGGCGGCGGCGGCGGGGCAGGTTGACGAGGCGGCGGCCGAGATCGCAGC
CACTCGGGCGCACGTCCGCGTGGTGGCTCTCCTCTCCGCGCCGGACCCCA
AGCTGCGCTTCACGGCCGCCGAGCTCGCACTCCAGCTTTCCCGGCGGTGC
CGCCCGGGCCCGGCGCCCGACTTGAACCGGAATGGCGGCGGCGGCGACGG
CATCGCGAAGGATATGATCGAGGCCGGGGGGCTGCGGGCGCTCTGGAGGG
CCTGCTCCGACCCGTCCCCGATGGCCAGGCCGGTCGCTCTCGAGGCCCTC
GCGACGATGCTCGGGACGGCGGCGGCGATGAGCCGGTCCAGCGCGTCCTC
CGAGGCCGTCCTCGCGCTCGTGTCGGAGGGTGCGGTCGGGGGCCTCGTGC
GGCAGCACGTCGACCCGGCTCTTTCCGTGCTCGGCGGCGGCGGGAGGGGC
CGTGGCGTTGCCGGTGGTGGTGGCTCGGCGACCGCTCCCGGGGAAGCCGC
CGCCGCCGCCGCCGCCGCCGCGACCTCCGCCCTCCTGGCCCTCCACTTCC
TCGCCGCCAACCCGGACCCGGCTGTGCACGGGCTGTTTGTCGCGGCCGCC
GGGGTCGATGAGCAGCAGGGTGGGGCCACTCGCGGCGGCAGCACCTGGAG
CATGATACTGTCGTGCGTTGAGGCCGGGGCGGAGGGCCGGGGGGGTCCCG
CCTTCCTGGAAGCGGCGCTGCTGGCGGCCGGGAGCGTGTGCGGGGCGCCT
CCCCTCCCGGTGTTGGGCGGCGGCGGCGGCGCAGCCGCCGCTGTTGTACC
TATGGGGTTGGCCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15058:1868..2982-

>mRNA_E-fasciculatus_F_contig15058.3584.1 ID=mRNA_E-fasciculatus_F_contig15058.3584.1|Name=mRNA_E-fasciculatus_F_contig15058.3584.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2226bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15058:1868..2982- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCTTGCGGCCCGGTCTCTCTCGCAGGCGAGTATCATCGACCCCCTGCT
CGGAATGCTGGCCGGCGGCACGAACAAAGATGCCCACGCCTCCGCCCTGG
CCATGGAACTCCTGGTCGTCCTGGCTTCTCACCCCCCCTTCTCCGGCCGG
CTCCGCGCGGCCGGCACCATCCCCGCCGTGGCGGCCTGTCTGGAGGACCG
CCCCGCTAGGGGCGCGGCGGCAGAGCCCGGGGCCAGGGCCTCGTTAATGC
AGCTCGCGCTCATCGTTCTTACCGGCTTTCTGCGTGTCGACGGGGATCAA
CCGGCGGCGGCGGCGGGGCAGGTTGACGAGGCGGCGGCCGAGATCGCAGC
CACTCGGGCGCACGTCCGCGTGGTGGCTCTCCTCTCCGCGCCGGACCCCA
AGCTGCGCTTCACGGCCGCCGAGCTCGCACTCCAGCTTTCCCGGCGGTGC
CGCCCGGGCCCGGCGCCCGACTTGAACCGGAATGGCGGCGGCGGCGACGG
CATCGCGAAGGATATGATCGAGGCCGGGGGGCTGCGGGCGCTCTGGAGGG
CCTGCTCCGACCCGTCCCCGATGGCCAGGCCGGTCGCTCTCGAGGCCCTC
GCGACGATGCTCGGGACGGCGGCGGCGATGAGCCGGTCCAGCGCGTCCTC
CGAGGCCGTCCTCGCGCTCGTGTCGGAGGGTGCGGTCGGGGGCCTCGTGC
GGCAGCACGTCGACCCGGCTCTTTCCGTGCTCGGCGGCGGCGGGAGGGGC
CGTGGCGTTGCCGGTGGTGGTGGCTCGGCGACCGCTCCCGGGGAAGCCGC
CGCCGCCGCCGCCGCCGCCGCGACCTCCGCCCTCCTGGCCCTCCACTTCC
TCGCCGCCAACCCGGACCCGGCTGTGCACGGGCTGTTTGTCGCGGCCGCC
GGGGTCGATGAGCAGCAGGGTGGGGCCACTCGCGGCGGCAGCACCTGGAG
CATGATACTGTCGTGCGTTGAGGCCGGGGCGGAGGGCCGGGGGGGTCCCG
CCTTCCTGGAAGCGGCGCTGCTGGCGGCCGGGAGCGTGTGCGGGGCGCCT
CCCCTCCCGGTGTTGGGCGGCGGCGGCGGCGCAGCCGCCGCTGTTGTACC
TATGGGGTTGGCCCCCCTTGCGGCCCGGTCTCTCTCGCAGGCGAGTATCA
TCGACCCCCTGCTCGGAATGCTGGCCGGCGGCACGAACAAAGATGCCCAC
GCCTCCGCCCTGGCCATGGAACTCCTGGTCGTCCTGGCTTCTCACCCCCC
CTTCTCCGGCCGGCTCCGCGCGGCCGGCACCATCCCCGCCGTGGCGGCCT
GTCTGGAGGACCGCCCCGCTAGGGGCGCGGCGGCAGAGCCCGGGGCCAGG
GCCTCGTTAATGCAGCTCGCGCTCATCGTTCTTACCGGCTTTCTGCGTGT
CGACGGGGATCAACCGGCGGCGGCGGCGGGGCAGGTTGACGAGGCGGCGG
CCGAGATCGCAGCCACTCGGGCGCACGTCCGCGTGGTGGCTCTCCTCTCC
GCGCCGGACCCCAAGCTGCGCTTCACGGCCGCCGAGCTCGCACTCCAGCT
TTCCCGGCGGTGCCGCCCGGGCCCGGCGCCCGACTTGAACCGGAATGGCG
GCGGCGGCGACGGCATCGCGAAGGATATGATCGAGGCCGGGGGGCTGCGG
GCGCTCTGGAGGGCCTGCTCCGACCCGTCCCCGATGGCCAGGCCGGTCGC
TCTCGAGGCCCTCGCGACGATGCTCGGGACGGCGGCGGCGATGAGCCGGT
CCAGCGCGTCCTCCGAGGCCGTCCTCGCGCTCGTGTCGGAGGGTGCGGTC
GGGGGCCTCGTGCGGCAGCACGTCGACCCGGCTCTTTCCGTGCTCGGCGG
CGGCGGGAGGGGCCGTGGCGTTGCCGGTGGTGGTGGCTCGGCGACCGCTC
CCGGGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCGACCTCCGCCCTCCTG
GCCCTCCACTTCCTCGCCGCCAACCCGGACCCGGCTGTGCACGGGCTGTT
TGTCGCGGCCGCCGGGGTCGATGAGCAGCAGGGTGGGGCCACTCGCGGCG
GCAGCACCTGGAGCATGATACTGTCGTGCGTTGAGGCCGGGGCGGAGGGC
CGGGGGGGTCCCGCCTTCCTGGAAGCGGCGCTGCTGGCGGCCGGGAGCGT
GTGCGGGGCGCCTCCCCTCCCGGTGTTGGGCGGCGGCGGCGGCGCAGCCG
CCGCTGTTGTACCTATGGGGTTGGCC
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