mRNA_E-fasciculatus_F_contig1505.3580.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1505.3580.1
Unique NamemRNA_E-fasciculatus_F_contig1505.3580.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1505.3580.1 vs. uniprot
Match: D7G2Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z6_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 4.410e-88
Identity = 144/173 (83.24%), Postives = 149/173 (86.13%), Query Frame = 1 
Query:   37 MVVMLVPLGDAFAFGSSAGWHTHAVARQSTRSTRSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGATSNAKWLQVLDNTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPMINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGD 555
            MVV+LVPL DAFA GSSAGWHTHAVAR +TRSTRS     XXXXXXXXXX                SGATSNAKWLQVLD+TSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFP+INGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTG+
Sbjct:    1 MVVVLVPLVDAFALGSSAGWHTHAVARPATRSTRSLTTMMXXXXXXXXXXYAEAKNKKSSGSKQQPSGATSNAKWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGE 173
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BLAST of mRNA_E-fasciculatus_F_contig1505.3580.1 vs. uniprot
Match: W7TAQ7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAQ7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.030e-6
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  265 QVLDNTSELEP--GSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPMINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTG 552
            +VLD  SEL    GS K V G  K +  +  +    G   A+   CGRCKFP++ GKV        +ED  P VE D +  I I CPLC   F+L +G
Sbjct:  106 KVLDVGSELADAEGSQKAV-GPLKDDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKV--------SED--PSVEDDEDKGI-ITCPLCAVRFSLASG 191
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BLAST of mRNA_E-fasciculatus_F_contig1505.3580.1 vs. uniprot
Match: A0A7S2USE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.910e-5
Identity = 33/112 (29.46%), Postives = 50/112 (44.64%), Query Frame = 1 
Query:  232 ASGATSN--AKWLQVLDNTSELEP--GSVKVVS-GKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPMINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTG 552
            A G  SN    W+QV ++  +++   G+ K V      G+     +  + G   +    CGRC+FP+INGK+                  D + E  I CPLCG  F+L +G
Sbjct:   82 AEGEGSNYMGTWIQVFESDEDMDSKEGATKAVEITDPLGKPAPVLMIRHEGKISSTEIGCGRCQFPLINGKI-----------------MDQDGEPHIECPLCGCGFSLSSG 176
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1505.3580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2Z6_ECTSI4.410e-8883.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TAQ7_9STRA2.030e-639.80Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S2USE0_9STRA5.910e-529.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1505contigE-fasciculatus_F_contig1505:13210..17493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-09_004280.1
Exons5
Model size555
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1505.3580.1prot_E-fasciculatus_F_contig1505.3580.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1505 13210..17493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.7487557-CDS-E-fasciculatus_F_contig1505:13209..133101622927984.7487557-CDS-E-fasciculatus_F_contig1505:13209..13310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 13210..13310 +
1695995778.4111464-CDS-E-fasciculatus_F_contig1505:13209..133101695995778.4111464-CDS-E-fasciculatus_F_contig1505:13209..13310Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 13210..13310 +
1622927984.7669425-CDS-E-fasciculatus_F_contig1505:15233..153991622927984.7669425-CDS-E-fasciculatus_F_contig1505:15233..15399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 15234..15399 +
1695995778.4207296-CDS-E-fasciculatus_F_contig1505:15233..153991695995778.4207296-CDS-E-fasciculatus_F_contig1505:15233..15399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 15234..15399 +
1622927984.780783-CDS-E-fasciculatus_F_contig1505:15869..159111622927984.780783-CDS-E-fasciculatus_F_contig1505:15869..15911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 15870..15911 +
1695995778.4295864-CDS-E-fasciculatus_F_contig1505:15869..159111695995778.4295864-CDS-E-fasciculatus_F_contig1505:15869..15911Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 15870..15911 +
1622927984.8008327-CDS-E-fasciculatus_F_contig1505:16355..164631622927984.8008327-CDS-E-fasciculatus_F_contig1505:16355..16463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 16356..16463 +
1695995778.4470599-CDS-E-fasciculatus_F_contig1505:16355..164631695995778.4470599-CDS-E-fasciculatus_F_contig1505:16355..16463Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 16356..16463 +
1622927984.8148751-CDS-E-fasciculatus_F_contig1505:17355..174931622927984.8148751-CDS-E-fasciculatus_F_contig1505:17355..17493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 17356..17493 +
1695995778.4600067-CDS-E-fasciculatus_F_contig1505:17355..174931695995778.4600067-CDS-E-fasciculatus_F_contig1505:17355..17493Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 17356..17493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1505.3580.1

>prot_E-fasciculatus_F_contig1505.3580.1 ID=prot_E-fasciculatus_F_contig1505.3580.1|Name=mRNA_E-fasciculatus_F_contig1505.3580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=185bp
MSTTTRIVALLSMVVMLVPLGDAFAFGSSAGWHTHAVARQSTRSTRSTTT
MMMAKKNRRERRYADAKKKKASSSTQQASGATSNAKWLQVLDNTSELEPG
SVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPMINGKVKLLTGG
GKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGD
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mRNA from alignment at E-fasciculatus_F_contig1505:13210..17493+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1505.3580.1 ID=mRNA_E-fasciculatus_F_contig1505.3580.1|Name=mRNA_E-fasciculatus_F_contig1505.3580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1505:13210..17493+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTACCACCACGCGGATAGTGGCTCTTTTGTCGATGGTGGTGATGTT
GGTGCCGCTGGGGGATGCGTTTGCCTTCGGCTCTTCGGCGGGGTGGCACA
CGTGAGTATGGTCTTCTTGACTGATGACTGATGACACCGATGCTGTCAAT
CCGAAGCGAACGACTTTGCGCACCTACAAACACTACCGCTGTGTGTTCTG
TGAAGCGCACTGTGATGCACGGCGGTGTAAAGTCGGGATGGCGAGCGGTA
AGTGTCCTTCTTTGCTGCCGTAGAAGGCCACGCGATGCAGTCCACAGAGT
AGACATAGTCTAGTGGTGCGGACTCCGAAAAAACATGTGTCATGCGTGTA
CGCGATCTGACGCGATCTGACGCAGTAGAATGTCATCCGCTTCAACAGCC
AAACCGCAATCGGGTCGACCGTCACACCAACCGTATCTAGCATCCCCCCC
GGATAGTCTCTATGCTGGCCCTGTGCTTGCTACCAAGCCTCTATCCCAAA
AGCTTGCCTTGTTTGTTCGGCGGCAACATATGTGCGTGCATATCGACAGC
GGCAGCAGTTTAGTCTCTCCGCGTACATTTACACCCCGTGTTCTGCCCTT
GCAGTTTGTTCCCTCTGGTCGAGCGAGGTGAACTGCTGTTGCCTTCCACC
AGCAGATGATACCTTTGTTTTTCTAGCTGTTGGGTTTTGTCCAGCATCCC
ATCTATTCTCGTCGCGCTCCTGCTGTTCTCTCCGACAGCCACTCTGCCAC
AACAACACACACACAACATATATTGCCGTACTGGACGTTACATGACGTTA
GATATCACACCCCCTGGGTCAATTTTCGAAGGTCGACCCCTCCACGGCAG
GAAGAGTGGAGGCGCCGAAAATGTTGGTGTTCAAGCTGTCTAAAACGTAT
CGTTTCATTTATGTATTCTTCTTCGTCGTGGAGTAATCGAGCTTTGAAAA
TCTATCCAGGGGGTGTGGTATCCTGTGTCACCTGCGGTAGACATTTGGGC
TCCAGCTGCGAAACCTCCCACACCAATATTAAGGTTCTGCGGTTTGCATG
CTGCATGCCTCAACACGGTCGCAAAAGGGCTGCGAACCGTGCCGCGCATC
CCCTTCCTTAGCACGCGAACAAATTTAAGAGGCCGATTTTAATACATTCT
CATGAACGAGCGGTAGGTTGTTCGTAGGTATATTTTCGTCCCATTTAAAA
TTGTCGCCGCATATGCATACCTCTCGGTATGTGACTGCCGAACCAACCCT
GGTCACACCGGGGGTAACCGTAAACCTAGACTTTTTTTGTTTGTTTTCGA
CATATCCCCGTACAGCAGTGTAGTAGCGTAACGCCGTCCGGTCTTTTGCC
TCTTTTTTGTTTACTCACGCCTACACGCTCCCCACCTCGTCAATACACTG
AGAATCTTCACCACTTTGTACAGAACGGTTCGAACTTAGAGAGTGAGAAG
GTCATGCCTACGAGGATACCAACTGAACCAATCACTGGGCGACCATATCG
AGTAAGTGTTACGTTTCAAAGCCCGGCAGCCTGTCAAATAGCAATTGTAT
GGTCAAGTAACCCGTTTCATGTGCAATACATTTTGGGGAAAACAAATTCG
ACGCTCGGTTATTCAACCAGGGGGAGAACACCGAACGACCCAGCTTAATT
GAACATTCGATTGTTCACAGTGAAAAACCCCAGCGCCACTGTGCTCGATG
CTGGCACGTTTGGTTCCTCGAATGGCTCGGCATCGAAAATCGGTATGGAG
GTGAATCAGGCAATTTGACACGTTCGCCTTGTTTTTTTTTCAAGCTGAAG
AAGGAGGATGTGTTCTAGTTCCGACCGTGGGACAATTTCTAGATTTGAAC
AACTGAACAAGTTTGGTCATTGGTTTTTCAGGGTGACACTAAATCGACAT
GTAAGTGGGCAAAGCACGACTATGAATGATTGTTTCATTTTTCTTCGTTT
GTCCGCGGGGTGTTTTTCGACAACTGCTGTATCTCACCGAACACAACCAA
CAACCGGTCGTGATGATCAAGCAGGCACGCGGTTGCGAGACAATCCACCA
GATCTACGAGATCTACCACGACGATGATGATGGCGAAAAAGAACCGGAGA
GAACGACGATACGCCGATGCGAAGAAGAAAAAGGCCTCGAGTTCCACGCA
ACAAGCCTCGGGGGCTACGTCTAACGCGAAGTGGCTCCAGGTACTGCTTT
ATTCTGTCTGTTTCACCTGCTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTGGTGTTGTTGTTTTTGGT
GTTGGTGTTGTTCTGTTGATTCCGCCGCTGCAAAATATGTCTTTGGGTTT
GCTTTATTTTCGTGCATGCTGTACCCACGATGCCTTTGCTGCGCCAACGA
GCCTTGTTGGATCGTACTGTAGGCGCTTCCTGTGAAGTAGGCAACCCTTT
CACCACCACGACCATCACCATCACCACGTCAAATCAACTGATGATACGCT
GGATGAAAAGGAGCCAACAAGCATTCATATACCCACACCTAACAAAGAGC
AGACACGACAATGGCGCCACGTTTGTTTATGCTCGACTGTATTGTCAGCC
TGACACATGATGCTGCTGCCGGCCTTTGTGGCTGCGGTTGTTTTGTTTTT
TGTCATACAGGTTCTCGACAACACCTCCGAGTTGGAGCCCGGCAGTGTAA
AGGTAAGGGGCCGGCACATCACCGCTAACCATTTGGGGGGCGGAAATCGC
GCGATGCTTCTTGAAACCATCGTCCCCTGTGCGTACATGGTGTGTCTTGT
ACCGGGCGCTTGGGCACTACCAGGGAAGCATGTGTTGGTTTGAGACTCAG
CGGATAGTTCTCTTTTCTTTGGGGTTCCTGCCTATTCCTCTCGCACCTTC
CCTCGTTCTTCAGTTTATCTTGCTCAGTTTTTTTCCGGATAGTGAACGGG
AACGGAGCTCTCTACCTATCGCCGGCCGCTCGCCACCTCTCATGGCCGGG
TGGCCGCTAAAAGCAGCCGACGTGCCGCATTGGGCTGAGGCCTAAAAAAA
TACAAAACTGATACAGGCGGGCGCTCCGGCTGACGGTCGATTATGTTGCC
TTGTGACTTCTCTTCACTCTGCGATGGCTGGCATGGAGGAAAACAGGTGG
TGTCAGGAAAGTACAAGGGCGAGGACAGGGTTTTCACGCTTGCGGCGTAC
GGCGGGACGTACTACGCGGTCAGCGAAGCCTGCGGCCGCTGCAAGTTTCC
GATGGTGAGAGTGAGCTAGATCGCCTGCGAGTTTTTTTTTCACGGAGCCG
ATAGAAGCCGCATGGCAAGGCTGCGTGAGGAAAGAACACCCGTAGCAAGG
GGGCAATCCATAGGCCCCAAATAGGCTGTCAAAAGGGCCAGCTTGATACG
TTTGGTGGGGGCCATGTAAGGAACGTGGCCACCCAGCGCTTGGCTGTACA
AGTGGGTAGAGCTGATCTACATGGGTCAACACAATTTTGGGTCACCATCA
CGAGATCGCAACAGACTTCAACACTCAACAGCAACCGAAAAGTTTACAGC
GGCGGAATCAGCGAGACAAGCTTGCTCGCTGCGTGAAAGTACCTCCAATC
TCGTCCAAAACAAGTGGACAGTGTCGAAACTCGAGGTCGTTGGTGTGGGT
CGTGATGCACCGGTTCCTCTGCCGGTTTACCATGTCGAGGTTGATTAAGC
AGGCCGTCTTGATCGAGCATGCGTACGGCAGTTTTGGATCGCCTCTACCG
GTAGCATCTTGCGAAACTACCGCCATCCTTGAATTTTGTCCTGGAGGGAT
GTGCTTCCATGATTTTGTTGAGAACTTGTTCTTTTGACTCGAACACAGGT
GGTCGATAGAATCCAACGCATGTATACAGAAGCGCGCTCGTCGCCATGAG
AATGGAGCCTTGCTAGCATAGATATTATGGCCCAATTATGCATAGGAAAG
GCATGGGTTGTTTAGTGTTCGAAATGATGTTATCGCTGGCATTGATATCA
TGACCCAAATATTCATAGGAGGCTTGGGCTGTTAAGTGTCCGGAACGGTG
TTACCGCTACTGGTGTTGCCTTGACTTGGAAGCTGTTGCTGCTGGCGTTG
CCATTGCTTGATACGGCTGTCGCTGTTTCCGCTCGTCCTTTCGCAGATCA
ACGGCAAGGTGAAGCTTTTGACGGGGGGGGGCAAGGCGGAGGACGTTAAG
CCGGGGGTGGAGCAGGACCCGGAAGCGGAAATCGCGATCGCCTGCCCCCT
GTGCGGAGCGATGTTCAACTTGAGAACAGGTGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1505:13210..17493+

>mRNA_E-fasciculatus_F_contig1505.3580.1 ID=mRNA_E-fasciculatus_F_contig1505.3580.1|Name=mRNA_E-fasciculatus_F_contig1505.3580.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1505:13210..17493+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCTACCACCACGCGGATAGTGGCTCTTTTGTCGATGGTGGTGATGTT
GGTGCCGCTGGGGGATGCGTTTGCCTTCGGCTCTTCGGCGGGGTGGCACA
CATGTCTACCACCACGCGGATAGTGGCTCTTTTGTCGATGGTGGTGATGT
TGGTGCCGCTGGGGGATGCGTTTGCCTTCGGCTCTTCGGCGGGGTGGCAC
ACGCACGCGGTTGCGAGACAATCCACCAGATCTACGAGATCTACCACGAC
GATGATGATGGCGAAAAAGAACCGGAGAGAACGACGATACGCCGATGCGA
AGAAGAAAAAGGCCTCGAGTTCCACGCAACAAGCCTCGGGGGCTACGTCT
AACGCGAAGTGGCTCCAGGCACGCGGTTGCGAGACAATCCACCAGATCTA
CGAGATCTACCACGACGATGATGATGGCGAAAAAGAACCGGAGAGAACGA
CGATACGCCGATGCGAAGAAGAAAAAGGCCTCGAGTTCCACGCAACAAGC
CTCGGGGGCTACGTCTAACGCGAAGTGGCTCCAGGTTCTCGACAACACCT
CCGAGTTGGAGCCCGGCAGTGTAAAGGTTCTCGACAACACCTCCGAGTTG
GAGCCCGGCAGTGTAAAGGTGGTGTCAGGAAAGTACAAGGGCGAGGACAG
GGTTTTCACGCTTGCGGCGTACGGCGGGACGTACTACGCGGTCAGCGAAG
CCTGCGGCCGCTGCAAGTTTCCGATGGTGGTGTCAGGAAAGTACAAGGGC
GAGGACAGGGTTTTCACGCTTGCGGCGTACGGCGGGACGTACTACGCGGT
CAGCGAAGCCTGCGGCCGCTGCAAGTTTCCGATGATCAACGGCAAGGTGA
AGCTTTTGACGGGGGGGGGCAAGGCGGAGGACGTTAAGCCGGGGGTGGAG
CAGGACCCGGAAGCGGAAATCGCGATCGCCTGCCCCCTGTGCGGAGCGAT
GTTCAACTTGAGAACAGGTGACATCAACGGCAAGGTGAAGCTTTTGACGG
GGGGGGGCAAGGCGGAGGACGTTAAGCCGGGGGTGGAGCAGGACCCGGAA
GCGGAAATCGCGATCGCCTGCCCCCTGTGCGGAGCGATGTTCAACTTGAG
AACAGGTGAC
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