mRNA_E-fasciculatus_F_contig1505.3579.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1505.3579.1
Unique NamemRNA_E-fasciculatus_F_contig1505.3579.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1505.3579.1 vs. uniprot
Match: D7G2Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z5_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 7.160e-89
Identity = 175/270 (64.81%), Postives = 192/270 (71.11%), Query Frame = 1 
Query:    1 MKPTTLHPP-SPSTILAGLTNTGXXXXXXSVPPLVMSLGFQLRNHPHLRCFHGDGC---EATNSLIDNVRDAIVDKSREVGDAICDAIGMSKHDEITLYKRKGWPVVTVPHGRTITERMWEELDARRTVRFRARIGAVLVPTRKESFPTPADVAASFFTADEIARAEKDIAPQGSDRTEWQALLSEIRDEARERQEXXXXXXXXXXXXXXXXXRWQERQLQRTLLARKARSRNVFEALGVLWRNTVNRSSNNEVDGERHGGAFGGRRPSG 798
            MKPTTLHPP S  T+  GLT T          PL MSLGF+LRNHPHLR FHGDG    EATNS +DNVR+AIVDK+REV DAI    G  K+DE+TL+KRKG P V VP GR + ER W ELDARRTVRF  RIGAVLVPTRKE+FP PADVAASF TA+E A AEK+I+P GS R+EWQALL E R EARERQE     XXXXXXXXX     Q    Q   LA+K R RNVFEAL +  RNT N  SN+EVDG RHGG FG RRP G
Sbjct:    1 MKPTTLHPPGSTPTVFPGLTTTDGGRGGGGASPLAMSLGFRLRNHPHLRRFHGDGSGGGEATNSFLDNVREAIVDKAREVRDAI----GTKKYDELTLFKRKGQPTVHVPTGRVVAERAWAELDARRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAEKEISPTGSGRSEWQALLLETRHEARERQETQAQLXXXXXXXXXQRHECQ----QPRKLAQKERPRNVFEALFLQRRNTAN--SNDEVDGPRHGG-FGVRRPLG 259
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BLAST of mRNA_E-fasciculatus_F_contig1505.3579.1 vs. uniprot
Match: A0A6H5L912_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L912_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 1.020e-85
Identity = 181/270 (67.04%), Postives = 198/270 (73.33%), Query Frame = 1 
Query:    1 MKPTTLHPPS-PSTILAGLTNTGXXXXXXSVPPLVMSLGFQLRNHPHLRCFHGDGC---EATNSLIDNVRDAIVDKSREVGDAICDAIGMSKHDEITLYKRKGWPVVTVPHGRTITERMWEELDARRTVRFRARIGAVLVPTRKESFPTPADVAASFFTADEIARAEKDIAPQGSDRTEWQALLSEIRDEARERQEXXXXXXXXXXXXXXXXXRWQERQLQRTLLARKARSRNVFEALGVLWRNTVNRSSNNEVDGERHGGAFGGRRPSG 798
            MKPT LHPPS   T   GLTNT       +  PL MSLGFQLRNHPHLR FHGDG    EATNS ++NVR AIVDK+R+V DAI    G  K+DE+TL KRKG P V VP GR +TER W ELD RRTVRF  RIGAVLVPTRKE+FP PADVAASF TA+E A AEKDI+P G  R+EWQALL E RDEARE+QE XXXXXXXXXXXXXXXX  Q+ +      A+KAR  NVFEAL + WRNTVN  SNNEVDG RHGG FG RR  G
Sbjct:    1 MKPTALHPPSFAPTAFPGLTNTDGSGGGAT--PLAMSLGFQLRNHPHLRQFHGDGSGGGEATNSFLNNVRKAIVDKARKVRDAI----GTKKYDELTLCKRKGRPTVHVPTGRGVTEREWAELDTRRTVRFSPRIGAVLVPTRKETFPKPADVAASFVTAEERAGAEKDISPTGPGRSEWQALLLETRDEAREKQEAXXXXXXXXXXXXXXXXXXQQPRKD----AQKARPLNVFEALVLQWRNTVN--SNNEVDGARHGG-FGVRRRLG 257
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1505.3579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Z5_ECTSI7.160e-8964.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L912_9PHAE1.020e-8567.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1505contigE-fasciculatus_F_contig1505:1659..3204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004290.1
Exons2
Model size874
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1505.3579.1prot_E-fasciculatus_F_contig1505.3579.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1505 1659..3194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.667396-CDS-E-fasciculatus_F_contig1505:1658..20541622927984.667396-CDS-E-fasciculatus_F_contig1505:1658..2054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 1659..2054 +
1695995778.3795316-CDS-E-fasciculatus_F_contig1505:1658..20541695995778.3795316-CDS-E-fasciculatus_F_contig1505:1658..2054Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 1659..2054 +
1622927984.6849468-CDS-E-fasciculatus_F_contig1505:2726..31941622927984.6849468-CDS-E-fasciculatus_F_contig1505:2726..3194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 2727..3194 +
1695995778.390479-CDS-E-fasciculatus_F_contig1505:2726..31941695995778.390479-CDS-E-fasciculatus_F_contig1505:2726..3194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1505 2727..3194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.7008011-UTR-E-fasciculatus_F_contig1505:3194..32041622927984.7008011-UTR-E-fasciculatus_F_contig1505:3194..3204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1505 3195..3204 +
1695995778.4012783-UTR-E-fasciculatus_F_contig1505:3194..32041695995778.4012783-UTR-E-fasciculatus_F_contig1505:3194..3204Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1505 3195..3204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1505.3579.1

>prot_E-fasciculatus_F_contig1505.3579.1 ID=prot_E-fasciculatus_F_contig1505.3579.1|Name=mRNA_E-fasciculatus_F_contig1505.3579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=288bp
MKPTTLHPPSPSTILAGLTNTGGGGGGGSVPPLVMSLGFQLRNHPHLRCF
HGDGCEATNSLIDNVRDAIVDKSREVGDAICDAIGMSKHDEITLYKRKGW
PVVTVPHGRTITERMWEELDARRTVRFRARIGAVLVPTRKESFPTPADVA
ASFFTADEIARAEKDIAPQGSDRTEWQALLSEIRDEARERQEAQAQLQRE
RDEEEEEEERWQERQLQRTLLARKARSRNVFEALGVLWRNTVNRSSNNEV
DGERHGGAFGGRRPSGGCTESPPSIGALSRRLRRRRE*
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mRNA from alignment at E-fasciculatus_F_contig1505:1659..3204+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1505.3579.1 ID=mRNA_E-fasciculatus_F_contig1505.3579.1|Name=mRNA_E-fasciculatus_F_contig1505.3579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1546bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1505:1659..3204+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAACCGACCACACTTCACCCTCCCTCCCCGTCGACGATATTGGCCGG
CCTCACCAACACCGGCGGCGGCGGCGGCGGCGGCAGCGTCCCTCCCTTGG
TGATGTCGCTCGGGTTTCAGCTGCGAAATCATCCTCACCTCCGTTGCTTC
CACGGCGACGGCTGCGAGGCCACCAACTCCTTGATTGACAACGTCAGGGA
TGCCATCGTGGACAAGTCCCGGGAAGTCGGCGACGCCATCTGCGACGCCA
TTGGCATGAGTAAACACGACGAGATCACGTTGTATAAGAGGAAAGGGTGG
CCCGTGGTTACAGTACCCCACGGCCGCACCATCACCGAACGGATGTGGGA
AGAGCTGGACGCCCGCCGGACTGTGCGGTTCAGAGCGAGGATAGGGGTAA
GTCGACTTGAATTTGTTGCTGCCGCCTTTACGATACAACGAAGCGGTCCA
ATGGTTGCTCAGTGCGTTCTACAACCGGCGCCGCCGCTCCCTACTGATGC
GGACGCCTTCCGTTGTCACAGACCGCCTACAGGCCAAAAGCAACGTGCCA
TAAGGAGCATCAAACCGTTCGTAAAAATCTTAAAATGGGCCCAGAAAATG
ATCACAAGGTACTTTTGTTTGGCGGAGGCAAACTGATTGTTGTTACTAGT
GTGTTTCCATTTCAGCGATTGCATTAGGCGTTTACCTACCCCCGATGGAC
CTTTACAGGCGTTGCCCTCATGTCTCCCGACTCGGAGACAATTATTTGAA
TATCAACGGCACCATTAGTACGGCATCTGACCCTCCCGCACAGAAAACGA
ATCACCTATAGGTGTAAAATAAAGTCACCAATGACGTGAAGACGTGTAAT
AGCATTTCAGAATTCTTTTCAGAAAGCATAGAAACCAGCTTCTCAGCGCC
TGACAACACACACACATATGCAGCGCTGCGGTGCAGCTAACGAACGGCAC
TCCGGTGTTTCTAGGAACATTCGACATGAAGGGTTGATGCTCGTCCAACC
CTCGATCCTGCCTACCTCAATCTTACCCTCACTTGCCGCCTACCCTGCTC
TCTTCCATTGTCTATCAGGCGGTCCTGGTGCCAACCCGGAAGGAGAGCTT
CCCCACGCCCGCCGACGTGGCCGCCAGCTTCTTCACGGCCGACGAGATTG
CCCGGGCAGAGAAAGACATTGCCCCCCAAGGATCAGACAGAACGGAGTGG
CAAGCGCTCTTGTCGGAGATACGCGACGAGGCCAGGGAGAGGCAAGAAGC
ACAGGCTCAGCTTCAGCGAGAGCGGGACGAAGAAGAAGAAGAAGAAGAAC
GGTGGCAAGAGCGCCAGCTGCAGAGAACGCTGTTGGCACGGAAAGCACGC
TCCCGCAATGTGTTCGAGGCGCTCGGCGTTCTGTGGCGAAACACGGTCAA
CAGAAGCAGCAACAACGAGGTCGATGGGGAGAGACACGGGGGGGCCTTTG
GCGGGAGGCGGCCGTCGGGGGGGTGCACAGAAAGTCCACCATCTATCGGA
GCCCTCTCTCGTAGACTCCGACGCAGAAGGGAGTAGGAGCGCCGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1505:1659..3204+

>mRNA_E-fasciculatus_F_contig1505.3579.1 ID=mRNA_E-fasciculatus_F_contig1505.3579.1|Name=mRNA_E-fasciculatus_F_contig1505.3579.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1505:1659..3204+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAACCGACCACACTTCACCCTCCCTCCCCGTCGACGATATTGGCCGG
CCTCACCAACACCGGCGGCGGCGGCGGCGGCGGCAGCGTCCCTCCCTTGG
TGATGTCGCTCGGGTTTCAGCTGCGAAATCATCCTCACCTCCGTTGCTTC
CACGGCGACGGCTGCGAGGCCACCAACTCCTTGATTGACAACGTCAGGGA
TGCCATCGTGGACAAGTCCCGGGAAGTCGGCGACGCCATCTGCGACGCCA
TTGGCATGAGTAAACACGACGAGATCACGTTGTATAAGAGGAAAGGGTGG
CCCGTGGTTACAGTACCCCACGGCCGCACCATCACCGAACGGATGTGGGA
AGAGCTGGACGCCCGCCGGACTGTGCGGTTCAGAGCGAGGATAGGGATGA
AACCGACCACACTTCACCCTCCCTCCCCGTCGACGATATTGGCCGGCCTC
ACCAACACCGGCGGCGGCGGCGGCGGCGGCAGCGTCCCTCCCTTGGTGAT
GTCGCTCGGGTTTCAGCTGCGAAATCATCCTCACCTCCGTTGCTTCCACG
GCGACGGCTGCGAGGCCACCAACTCCTTGATTGACAACGTCAGGGATGCC
ATCGTGGACAAGTCCCGGGAAGTCGGCGACGCCATCTGCGACGCCATTGG
CATGAGTAAACACGACGAGATCACGTTGTATAAGAGGAAAGGGTGGCCCG
TGGTTACAGTACCCCACGGCCGCACCATCACCGAACGGATGTGGGAAGAG
CTGGACGCCCGCCGGACTGTGCGGTTCAGAGCGAGGATAGGGGCGGTCCT
GGTGCCAACCCGGAAGGAGAGCTTCCCCACGCCCGCCGACGTGGCCGCCA
GCTTCTTCACGGCCGACGAGATTGCCCGGGCAGAGAAAGACATTGCCCCC
CAAGGATCAGACAGAACGGAGTGGCAAGCGCTCTTGTCGGAGATACGCGA
CGAGGCCAGGGAGAGGCAAGAAGCACAGGCTCAGCTTCAGCGAGAGCGGG
ACGAAGAAGAAGAAGAAGAAGAACGGTGGCAAGAGCGCCAGCTGCAGAGA
ACGCTGTTGGCACGGAAAGCACGCTCCCGCAATGTGTTCGAGGCGCTCGG
CGTTCTGTGGCGAAACACGGTCAACAGAAGCAGCAACAACGAGGTCGATG
GGGAGAGACACGGGGGGGCCTTTGGCGGGAGGCGGCCGTCGGGGGGGTGC
ACAGAAAGTCCACCATCTATCGGAGCCCTCTCTCGTAGACTCCGACGCAG
AAGGGAGTAGGCGGTCCTGGTGCCAACCCGGAAGGAGAGCTTCCCCACGC
CCGCCGACGTGGCCGCCAGCTTCTTCACGGCCGACGAGATTGCCCGGGCA
GAGAAAGACATTGCCCCCCAAGGATCAGACAGAACGGAGTGGCAAGCGCT
CTTGTCGGAGATACGCGACGAGGCCAGGGAGAGGCAAGAAGCACAGGCTC
AGCTTCAGCGAGAGCGGGACGAAGAAGAAGAAGAAGAAGAACGGTGGCAA
GAGCGCCAGCTGCAGAGAACGCTGTTGGCACGGAAAGCACGCTCCCGCAA
TGTGTTCGAGGCGCTCGGCGTTCTGTGGCGAAACACGGTCAACAGAAGCA
GCAACAACGAGGTCGATGGGGAGAGACACGGGGGGGCCTTTGGCGGGAGG
CGGCCGTCGGGGGGGTGCACAGAAAGTCCACCATCTATCGGAGCCCTCTC
TCGTAGACTCCGACGCAGAAGGGAGTAG
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