mRNA_E-fasciculatus_F_contig15045.3578.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15045.3578.1
Unique NamemRNA_E-fasciculatus_F_contig15045.3578.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15045.3578.1 vs. uniprot
Match: D8LHE3_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.640e-32
Identity = 75/95 (78.95%), Postives = 79/95 (83.16%), Query Frame = 3 
Query:  501 TVLWKVEWVFCTAVAVEGRGASGAGGRGDAD---VTVSDPSVSEELSLLEAVAKHLEPRPGNAPLRHRLKLFAKPWGEAAAAAAAA--KTSGTAS 770
            T+LWKVEWVFCTAVAVEG+ ASGA          VTVSDP+VSEE+SLLEAVAKHLEPRPGNAPLRHRLKLF KPWGEAAAAA AA  KTSG AS
Sbjct:  175 TLLWKVEWVFCTAVAVEGQRASGAXXXXXXXXXXVTVSDPTVSEEVSLLEAVAKHLEPRPGNAPLRHRLKLFTKPWGEAAAAATAATAKTSGVAS 269
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15045.3578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE3_ECTSI2.640e-3278.95HIT-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15045contigE-fasciculatus_F_contig15045:1754..3096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size771
Cds size393
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15045.3578.1prot_E-fasciculatus_F_contig15045.3578.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15045 2704..3096 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.589926-UTR-E-fasciculatus_F_contig15045:1753..18821622927984.589926-UTR-E-fasciculatus_F_contig15045:1753..1882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15045 1754..1882 -
1695995778.34632-UTR-E-fasciculatus_F_contig15045:1753..18821695995778.34632-UTR-E-fasciculatus_F_contig15045:1753..1882Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15045 1754..1882 -
1622927984.605682-UTR-E-fasciculatus_F_contig15045:2455..27031622927984.605682-UTR-E-fasciculatus_F_contig15045:2455..2703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15045 2456..2703 -
1695995778.3606527-UTR-E-fasciculatus_F_contig15045:2455..27031695995778.3606527-UTR-E-fasciculatus_F_contig15045:2455..2703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15045 2456..2703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.6210616-CDS-E-fasciculatus_F_contig15045:2703..30961622927984.6210616-CDS-E-fasciculatus_F_contig15045:2703..3096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15045 2704..3096 -
1695995778.3694043-CDS-E-fasciculatus_F_contig15045:2703..30961695995778.3694043-CDS-E-fasciculatus_F_contig15045:2703..3096Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15045 2704..3096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15045.3578.1

>prot_E-fasciculatus_F_contig15045.3578.1 ID=prot_E-fasciculatus_F_contig15045.3578.1|Name=mRNA_E-fasciculatus_F_contig15045.3578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=131bp
VVVVVVVVVVVVVRTVLAVQLQQPVVVATAQARHQHQQHQQHQQQHQQHQ
QHQQQQQQDQQQQQQQWCERRLPYRLQRRDLAVLLLLVMALPQHPRLVVV
RERNRLLCHHHHHHHYRLLLLSQGPRRGSC*
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mRNA from alignment at E-fasciculatus_F_contig15045:1754..3096-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15045.3578.1 ID=mRNA_E-fasciculatus_F_contig15045.3578.1|Name=mRNA_E-fasciculatus_F_contig15045.3578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1343bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15045:1754..3096- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGACAGTTCT
AGCCGTCCAGCTGCAGCAGCCGGTGGTGGTGGCGACGGCCCAGGCCAGGC
ATCAGCATCAGCAGCATCAGCAGCATCAGCAGCAGCATCAGCAGCATCAG
CAGCATCAGCAGCAGCAGCAGCAGGATCAGCAGCAGCAGCAGCAGCAGTG
GTGCGAGCGCCGTCTACCGTATCGACTTCAGCGGCGGGACCTAGCGGTGC
TGCTGCTGCTAGTAATGGCTCTTCCACAACACCCACGGTTGGTGGTGGTG
CGAGAAAGAAACCGCCTGCTGTGTCATCACCACCACCACCACCACTACCG
GCTACTGCTGCTGTCGCAAGGCCCACGTCGCGGGAGTTGCTAGACCTGGA
AAATAAGGCCTCTCCACCACCCGGCTCCAGCATCATCAGGATCGAAAGCA
GCGGCGGCGGCGGCGGCGGCGGGGGCCAGTCTAATCGCTCCTCGTCGTCG
ACCGTGCTGTGGAAGGTTGAATGGGTGTTCTGTACGGCTGTGGCGGTGGA
GGGCCGGGGCGCGAGCGGCGCCGGGGGGAGGGGCGACGCGGATGTGACAG
TCTCGGACCCATCGGTATCGGAGGAGCTCTCGCTACTCGAGGTGTGCAGT
TATGGTAGTCGTTGTGTCCCCCGCGCTTTTGTTAGGACACCGCTGACATT
TTAGGACGCTTTCCCCCCTCCGCTTTAAGGACAACCACGTTTTTTTTCAG
AAACATTGTGCCCCGCAGAACGATAAAACCAATAGGGCTAATTGTGACTG
GTACAGCCGGACACCAATGATTCAGGGCAGCAATCTCTCCGCCCAGCCTT
ATGATAGACGCTTTTTTCGGGAGCATGGTGCCGGCACAAAAGATGGAGCC
CAACAGGTTGTGGTGTCTTGTGTCGCCTACGGCAGTAGGCTACAGCCTCG
CGAAAAAGTTGGGCCTTTATTGAAGCGGACGTTCGTTGGTAGGTAGCTGT
CAACCTTAACCTTTAGGGCTGGGCACTGGTTGGAGGTTACACTGAGTCAA
CCCTCTTGCCAGAAGACACAGACTGATCACCTGATATCTAGGACAAACTA
TTCGGGGAGGAGAGCATTCGGGGGCACACTGTCAAGGCGTCGATTTTGGT
CGGCGAATAGAGCTGTGCACATTCTGCTGAAACTAACTCATCCTCCCACC
CTTGCTTGTCCTAGGCCGTCGCGAAGCATCTGGAGCCCAGGCCAGGGAAT
GCTCCTCTGCGACACCGCCTCAAGCTCTTCGCCAAGCCCTGGGGCGAGGC
TGCTGCTGCCGCCGCTGCCGCGAAGACGTCAGGTACGGCGAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15045:1754..3096-

>mRNA_E-fasciculatus_F_contig15045.3578.1 ID=mRNA_E-fasciculatus_F_contig15045.3578.1|Name=mRNA_E-fasciculatus_F_contig15045.3578.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15045:1754..3096- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGACAGTTCT
AGCCGTCCAGCTGCAGCAGCCGGTGGTGGTGGCGACGGCCCAGGCCAGGC
ATCAGCATCAGCAGCATCAGCAGCATCAGCAGCAGCATCAGCAGCATCAG
CAGCATCAGCAGCAGCAGCAGCAGGATCAGCAGCAGCAGCAGCAGCAGTG
GTGCGAGCGCCGTCTACCGTATCGACTTCAGCGGCGGGACCTAGCGGTGC
TGCTGCTGCTAGTAATGGCTCTTCCACAACACCCACGGTTGGTGGTGGTG
CGAGAAAGAAACCGCCTGCTGTGTCATCACCACCACCACCACCACTACCG
GCTACTGCTGCTGTCGCAAGGCCCACGTCGCGGGAGTTGCTAGGTGGTGG
TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCGGACAGTTCTAGCCGTC
CAGCTGCAGCAGCCGGTGGTGGTGGCGACGGCCCAGGCCAGGCATCAGCA
TCAGCAGCATCAGCAGCATCAGCAGCAGCATCAGCAGCATCAGCAGCATC
AGCAGCAGCAGCAGCAGGATCAGCAGCAGCAGCAGCAGCAGTGGTGCGAG
CGCCGTCTACCGTATCGACTTCAGCGGCGGGACCTAGCGGTGCTGCTGCT
GCTAGTAATGGCTCTTCCACAACACCCACGGTTGGTGGTGGTGCGAGAAA
GAAACCGCCTGCTGTGTCATCACCACCACCACCACCACTACCGGCTACTG
CTGCTGTCGCAAGGCCCACGTCGCGGGAGTTGCTAG
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