mRNA_E-fasciculatus_F_contig15044.3577.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15044.3577.1
Unique NamemRNA_E-fasciculatus_F_contig15044.3577.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: D8LDS0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS0_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 1.180e-124
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 1 
Query:    1 RTATTAMRPLPAIVSPPTDAGLPAPLIVESRGLFGKRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR 555
            R ATTAMRPLPAIV PP DAGLPAPLIVESRGL GKRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQET+EDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR
Sbjct:    6 REATTAMRPLPAIVPPPADAGLPAPLIVESRGLLGKRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETLEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR 190
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A836CLM8_9STRA (Beta-lactamase superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM8_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.050e-52
Identity = 97/183 (53.01%), Postives = 124/183 (67.76%), Query Frame = 1 
Query:    7 ATTAMRPLPAIVSPPTDAGLPAPLIVESRGLFGKRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR 555
            A +A R LP +V+ P D  L A   +E + L G +  +DNPWAPG T+KS   +  ++R     + PT  +   DLP AEVD  AI  H  GD MRVTWIGHATLLVQ+ G+N +TDP+F+ER SA Q  GPKR+ PPA+ VSELP +D VLLSHNHYDHL   +V+ +G+ PLW+VP G+KR
Sbjct:   11 AVSATRRLPEVVADP-DPTLDAFRPLE-KALAGGKVKFDNPWAPGSTDKSPAQMWDLMRHPQPPY-PTPAQVAADLPFAEVDHAAIHSHRAGDAMRVTWIGHATLLVQMGGVNFITDPIFAERCSAVQWAGPKRYTPPAMRVSELPPLDFVLLSHNHYDHLCYETVQEIGNAPLWIVPKGVKR 190
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A1S3JD03_LINUN (N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JD03_LINUN)

HSP 1 Score: 136 bits (342), Expect = 3.380e-35
Identity = 71/149 (47.65%), Postives = 93/149 (62.42%), Query Frame = 1 
Query:  118 YDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGD--GPL--WVVPSGLK 552
            + NPWA   T   LG L KM+       +PT +E    LP  + D E +++      +   WIGHAT+LVQ+DGL ILTDP+FS+R S  Q +GP+R+RPP  S+ ELP+ID V++SH HYDHLD  SVK + +  GP   W VP GLK
Sbjct:   62 FVNPWATW-TAPGLGGLMKMVFKEKKPSLPTTEEIEARLPVIKPDFECLSKGPSPTTLSTVWIGHATVLVQMDGLTILTDPIFSDRCSPVQFIGPRRYRPPPCSIEELPKIDAVVISHTHYDHLDLTSVKKLNERFGPSLKWFVPLGLK 209
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: UPI00148A229A (N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A229A)

HSP 1 Score: 134 bits (337), Expect = 8.140e-35
Identity = 65/154 (42.21%), Postives = 94/154 (61.04%), Query Frame = 1 
Query:  106 KRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVG----DGPLWVVPSGLKR 555
            K   Y NP+        +G   K++RS D  ++P+ +E  + LP    D + +    E D +++ WIGHA++LVQ+DGL IL DP+FS+R S  Q +GPKR+RPP   + +LP +D +++SHNHYDHLD GSVK++     D   W V SG K 
Sbjct:   14 KNGRYQNPFDTWEDTPGMGTFLKLMRSEDHSNIPSPRELDKTLPVETPDFQKLKNPPESD-IQIMWIGHASVLVQMDGLTILADPIFSDRCSPVQFLGPKRYRPPPCKIKDLPHLDAIIISHNHYDHLDHGSVKSLNSKYDDKITWFVASGTKE 166
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A7J7ITP9_BUGNE (NAPEPLD n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7ITP9_BUGNE)

HSP 1 Score: 130 bits (328), Expect = 1.200e-34
Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 1 
Query:  115 TYDNPWAPGITEKSLGDLAKMLRSGDMGHV-----PTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSV----KAVGDGPLWVVPSGLK 552
            +++NP+   I+    G + K LR   +G +     PT+QE  E+LP  + DL+ +      D ++  WIGHAT+L Q DG NIL+DP++SER S    +GPKR+RPP L + +LPRID V++SHNHYDHLD  SV    K  G    W+VP GLK
Sbjct:   18 SFENPFKSSISFPGGGRVCKFLREKFVGAITGPRAPTQQEINENLPVTKPDLQRL-NSPPVDKLQYIWIGHATMLYQTDGWNILSDPIWSERCSPFSFLGPKRYRPPPLPMEDLPRIDAVVISHNHYDHLDIHSVTTLNKLFGKSLHWLVPEGLK 171
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A1Y1XX77_9FUNG (Metallo-hydrolase/oxidoreductase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XX77_9FUNG)

HSP 1 Score: 133 bits (334), Expect = 3.880e-34
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 1 
Query:  118 YDNPWAPGITEKSLGDLAKMLRSGDMGH--VPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR 555
            + NPW    T     D+  +L+  D     +P +++ V   P    D E + +  EG   ++TW+GHA  L+Q+DG+NIL DP+FS+R S  Q VGPKR+ PP   + ELP+ID+V++SHNHYDHLD  +VKA+GDGP + VP G K+
Sbjct:   38 FQNPWK-SFTNHGFCDMFALLKDYDRQRCAIPPKEKLV---PVLTPDFELLNKP-EGKDFQLTWLGHACFLLQVDGINILFDPVFSDRCSPFQFVGPKRYTPPPCKIEELPKIDIVVISHNHYDHLDYNTVKALGDGPRYFVPLGNKK 180
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A210PH32_MIZYE (N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PH32_MIZYE)

HSP 1 Score: 132 bits (332), Expect = 4.910e-34
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 1 
Query:  106 KRTTYDNPWAPGITEKSLGDLAKM-LRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDP--MRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLK 552
            K   ++NPW     + SL +L K  +R  D  ++P+++E    LP  ++D E I      DP  +++ WIGHAT+LVQ+DGL +L DP+FS+R S SQ +GPKR+R P  ++ ELP +D+V++SHNHYDHLD GSVK +    G    W VP GLK
Sbjct:   20 KNGKFENPWK-SWHKPSLWNLLKFKIRDIDRSNIPSQEELDVTLPLMKLDQEKITNP---DPSCVQLVWIGHATVLVQLDGLTVLADPIFSDRCSFSQRMGPKRYRAPPCTIQELPPLDIVVISHNHYDHLDVGSVKQLVNKYGPSLHWFVPMGLK 171
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A0S8CSW9_9DELT (Lactamase_B domain-containing protein n=1 Tax=Desulfobacterales bacterium SG8_35_2 TaxID=1703401 RepID=A0A0S8CSW9_9DELT)

HSP 1 Score: 132 bits (331), Expect = 5.760e-34
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 1 
Query:  232 LPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKR 555
            +P+ E DL AI  H     ++VTWIGHAT+L+Q  G+NILTDPMFS+RAS    +GPKR+ PPAL + +LP ID +++SH+HYDHLD  +V+ +G G  W+VP GLK+
Sbjct:   62 IPRTEPDLAAI--HNPPSDLQVTWIGHATILIQYRGVNILTDPMFSDRASPISFLGPKRYNPPALQIKDLPPIDCIVISHSHYDHLDQKTVQQIGSGTKWLVPLGLKK 167
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BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: A0A8B8B126_CRAVI (N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B126_CRAVI)

HSP 1 Score: 132 bits (331), Expect = 6.240e-34
Identity = 63/154 (40.91%), Postives = 93/154 (60.39%), Query Frame = 1 
Query:  106 KRTTYDNPWAPGITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVG----DGPLWVVPSGLKR 555
            K   Y NP+         G   K++R  D  ++P ++E  + LP    D + +    E + +++ WIGHA++LVQ+DG+ IL DP+FS+R S  Q +GPKR+RPP   +++LP ID +++SHNHYDHLD GSVK++     D   W V SG K 
Sbjct:   14 KNGRYQNPFDTWEDTPGFGSFVKLMRCEDHSNIPCQRELNKTLPVENPDFQKLKNPPESE-IQIMWIGHASVLVQMDGITILADPIFSDRCSPVQFMGPKRYRPPPCKINDLPHIDAIIISHNHYDHLDHGSVKSLNSKYDDKITWFVASGTKE 166
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Match: UPI001BCFDE75 (MBL fold metallo-hydrolase n=1 Tax=Variovorax sp. PCZ-1 TaxID=2835533 RepID=UPI001BCFDE75)

HSP 1 Score: 131 bits (330), Expect = 1.440e-33
Identity = 69/143 (48.25%), Postives = 93/143 (65.03%), Query Frame = 1 
Query:  142 ITEKSLGDLAKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQH-GEGDPMRVTWIGHATLLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLKR 555
            + +KS  DL +      +  +P   E  +  P    D++ +A + G      +TWIGHAT+LVQ+ GLNILTDP FSERAS  Q  GPKR +PP +++ +LP ID+VLLSHNHYDHLD GSVKA+    G  PL++VP G+K+
Sbjct:   41 VIDKSRLDLLRWKWQSTLAGLPKPPE--KPTPTVSPDIKFVAANRGAAQEPAITWIGHATMLVQMGGLNILTDPHFSERASPVQFAGPKRAQPPGMALKDLPHIDLVLLSHNHYDHLDAGSVKALNAQAGGAPLFIVPLGVKK 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15044.3577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDS0_ECTSI1.180e-12497.30Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A836CLM8_9STRA1.050e-5253.01Beta-lactamase superfamily domain-containing prote... [more]
A0A1S3JD03_LINUN3.380e-3547.65N-acetylphosphatidylethanolamine-hydrolyzing phosp... [more]
UPI00148A229A8.140e-3542.21N-acyl-phosphatidylethanolamine-hydrolyzing phosph... [more]
A0A7J7ITP9_BUGNE1.200e-3445.16NAPEPLD n=1 Tax=Bugula neritina TaxID=10212 RepID=... [more]
A0A1Y1XX77_9FUNG3.880e-3444.59Metallo-hydrolase/oxidoreductase n=1 Tax=Basidiobo... [more]
A0A210PH32_MIZYE4.910e-3445.51N-acetylphosphatidylethanolamine-hydrolyzing phosp... [more]
A0A0S8CSW9_9DELT5.760e-3454.63Lactamase_B domain-containing protein n=1 Tax=Desu... [more]
A0A8B8B126_CRAVI6.240e-3440.91N-acetylphosphatidylethanolamine-hydrolyzing phosp... [more]
UPI001BCFDE751.440e-3348.25MBL fold metallo-hydrolase n=1 Tax=Variovorax sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15044contigE-fasciculatus_F_contig15044:53..3021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue7.6e-97
Seed eggNOG ortholog2880.D8LDS0
Preferred nameNAPEPLD
KEGG koko:K13985
KEGG Pathwayko04723,map04723
GOsGO:0001523,GO:0001659,GO:0001750,GO:0003674,GO:0003824,GO:0004620,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005768,GO:0005769,GO:0005794,GO:0005829,GO:0005886,GO:0005929,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006650,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007568,GO:0008081,GO:0008150,GO:0008152,GO:0008270,GO:0009308,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016101,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019866,GO:0031090,GO:0031224,GO:0031253,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031347,GO:0031349,GO:0031410,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032592,GO:0034308,GO:0034641,GO:0035900,GO:0036477,GO:0042439,GO:0042578,GO:0042592,GO:0042622,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044441,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044463,GO:0044464,GO:0045595,GO:0045597,GO:0045598,GO:0045600,GO:0046337,GO:0046486,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048521,GO:0048522,GO:0048583,GO:0048584,GO:0048871,GO:0050727,GO:0050729,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0060170,GO:0060259,GO:0065007,GO:0065008,GO:0070013,GO:0070290,GO:0070291,GO:0070292,GO:0071704,GO:0071944,GO:0080134,GO:0090335,GO:0090336,GO:0097458,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098573,GO:0098588,GO:0098590,GO:0120025,GO:0120038,GO:1901564,GO:1901615,GO:1903998,GO:1903999,GO:2000252
EggNOG free text desc.N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity
EggNOG OGsCOG2220@1,KOG3798@2759
EC3.1.4.54
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionN-acyl-phosphatidylethanolamine-hydrolysing phospholipase D
Ec32 orthologEc-08_003110.1
Exons4
Model size558
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15044.3577.1prot_E-fasciculatus_F_contig15044.3577.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15044 71..3021 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.4800081-UTR-E-fasciculatus_F_contig15044:52..701622927984.4800081-UTR-E-fasciculatus_F_contig15044:52..70Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15044 53..70 +
1695995778.2903645-UTR-E-fasciculatus_F_contig15044:52..701695995778.2903645-UTR-E-fasciculatus_F_contig15044:52..70Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15044 53..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927984.4981067-CDS-E-fasciculatus_F_contig15044:70..1331622927984.4981067-CDS-E-fasciculatus_F_contig15044:70..133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 71..133 +
1695995778.3028097-CDS-E-fasciculatus_F_contig15044:70..1331695995778.3028097-CDS-E-fasciculatus_F_contig15044:70..133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 71..133 +
1622927984.5136256-CDS-E-fasciculatus_F_contig15044:790..9551622927984.5136256-CDS-E-fasciculatus_F_contig15044:790..955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 791..955 +
1695995778.3122287-CDS-E-fasciculatus_F_contig15044:790..9551695995778.3122287-CDS-E-fasciculatus_F_contig15044:790..955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 791..955 +
1622927984.5303597-CDS-E-fasciculatus_F_contig15044:1803..18871622927984.5303597-CDS-E-fasciculatus_F_contig15044:1803..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 1804..1887 +
1695995778.3249457-CDS-E-fasciculatus_F_contig15044:1803..18871695995778.3249457-CDS-E-fasciculatus_F_contig15044:1803..1887Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 1804..1887 +
1622927984.54267-CDS-E-fasciculatus_F_contig15044:2793..30211622927984.54267-CDS-E-fasciculatus_F_contig15044:2793..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 2794..3021 +
1695995778.3363502-CDS-E-fasciculatus_F_contig15044:2793..30211695995778.3363502-CDS-E-fasciculatus_F_contig15044:2793..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15044 2794..3021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15044.3577.1

>prot_E-fasciculatus_F_contig15044.3577.1 ID=prot_E-fasciculatus_F_contig15044.3577.1|Name=mRNA_E-fasciculatus_F_contig15044.3577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=180bp
MRPLPAIVSPPTDAGLPAPLIVESRGLFGKRTTYDNPWAPGITEKSLGDL
AKMLRSGDMGHVPTEQETVEDLPQAEVDLEAIAQHGEGDPMRVTWIGHAT
LLVQIDGLNILTDPMFSERASASQMVGPKRFRPPALSVSELPRIDVVLLS
HNHYDHLDTGSVKAVGDGPLWVVPSGLKR*
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mRNA from alignment at E-fasciculatus_F_contig15044:53..3021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15044.3577.1 ID=mRNA_E-fasciculatus_F_contig15044.3577.1|Name=mRNA_E-fasciculatus_F_contig15044.3577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2969bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15044:53..3021+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTACAGCGACGACAGCAATGCGTCCCCTGCCGGCGATTGTGTCGCCTCC
TACGGACGCTGGTCTTCCGGCCCCGCTCATCGTGAGTCAGCAGCGGTACA
GCAGTAGGTACCAGCCCTCCTCATCGTAAAAGTAGCGAGGTGGGGTTCGA
AGGCGGCAGTGAGGCTGATATTTTTAGGCGAAATGTAGGTGTATGGAAGC
GCGCTCAGCCCTAGTGGCTAAAAGAACGCCGCGTTTAGTCGAGTTCCCGG
GCAATAGGCTAGCTACGCTCGGCTCTTGCCTCACGCAGAACAACAAGGCT
GGGCTACAAGTGCTCTCTGGCTACCGTAAGAGGCGGAGGTGGCACCCCCC
GATTCTCAAAGCTCTTATCGATTGCTCCACAACCAAGCTTAAGCTTAAGC
CAATACAATTGTACCGAAAAATAGCAGCTTTGGAAACACCTCGTCGAAGG
GCTCTCCCATCGCCGTATCGGCCGCTTTCTGTACCGCGTTGGGCGTGGAG
CACGAGAGCTTTGAAAGTCGGTCTAGACGGGGTGCCATCTCTCCGTATCT
TCGGTGTTTTGTATTTTGTTGTATTTCGAGAGGACCGCTCTTGTAGATTA
ACACGCGCATGGGTAGAAAGGCGGGGTCTGATGAGTGTGGTGGGATCGTT
GTAGCATCGATCACTTTGCCCCGATGATGCCAGGCAAGTATAAAGTTTAC
GGTGGCTGTTTTTTTTCTTCCATAACACACGAGCTCAGGTCGAGTCCCGG
GGGCTGTTCGGCAAGCGCACCACGTACGACAACCCTTGGGCGCCGGGGAT
AACGGAGAAGAGCCTTGGAGATCTTGCGAAGATGCTTCGGAGTGGGGACA
TGGGACACGTCCCCACCGAGCAGGAGACAGTCGAAGACCTGCCGCAGGCG
GAGGTGCGGTGTGCCTGCCACATTTGAGGAACGGTGCAGCAGCGGCAGCA
GCAACTACAACCCCAACAAAAGCACCACCACCACCACCACCACCACCACC
AGTGCCAGTAGCAAAGGCAGTAGCAGTAGTAGCAGTAGCAGCAATAGTGC
AACAGCAGCAACAGTGCAACAGCAGCAACAGTGCAACAGCAGCAACAGTG
CAACAGCAGCAACAGCAGTGCAACAGCAGCAACAAGAGCAAGAACAAGAG
AAACACCACCACCACCGGTGGCAGTAGCAAGGCAGTACAAGTATCAGGAA
CAGCAGCAAGGACGGTAGAAGCAGCAACAACAGGAGCAATGTGACCACGG
CAGGGGGTGCTCTTTTGACGGGCTCTTGACAGCCGCGGTCCGTGTTGTTT
ATACGTCCGCATTTACCTCTTCCGAATCACTCACTGCCTTGTACTCTTGT
AAACGAGGAAAAACGGCATTTACTTTGTTTCATTAGCGTGGCAGCACGAA
GCACCAGCAGCTGTAGTTGGCATGCAGCGGCGAGAGACGAGTGGAGTGAT
CGGGGATGGGGGTGATGCAGATGAACACACTGAAACGCCCCGTCGCCGCG
CTAGCGCGGGTGGTGGGGGTCAGAGAAGGGGGTCCCGGCGAATGCCGAAA
ATTACGCCGCGTCCCCCCCCCCCCCCCCCCCCNNNNNNNNNAGAATTCGA
AGGCTATCAGAAGTTCGTTTTTTTTCATGCCCGCGTCGTCTCTTTTGTTT
CGTTAGCCCCGCCACGTAAACAGCACAGCGATCGAATTATGAACTTTGTA
GTTGCATGGTGCCGCGCGCTTCACGCGGGCTTTGTACACGATCCTTCGCA
GGTGGACTTGGAGGCGATAGCGCAGCACGGCGAGGGGGACCCGATGCGGG
TAACCTGGATAGGGCACGCCACCTTGCTAGTCCAGGTACTGACCGCTGTA
CGAGCCAAACCAACAACGTCACCAACGTGACCTCTCCCCGTATGGTGTAG
CACCCCCGGAAAGATATAAACGGCACCACATGCGTGTCCGTAGTCGAGCC
AAACATCGTAATCTGCGTACGCATACTACTACCCGGAAATACATGAACGG
CACCACATGCGTGTCCGTATTTCACTGCTCTTCTCTTCTTGGATTGATTG
TTTTGCAACGCCTTCTCACACCACCTCCAAGGGGTGTGCGGGCGGGCGGG
CGGGCGTTCCCTGATCGACGGCAAACCACGACGATACGGACACACCCGGG
TTCCTTGGGTTGCGAGCGTACCACATTGTTGAGATTACTCGTACAGTAGC
CCACTTCTTCGTTGTAGACATCGATGGTAGTACAGCAGTCGTAGGCCCTT
GTAAGGCGGGTATGCGCCAGACCAATTCACCCGCCCTACCTATTCAGTAG
GGCACCCGCCTTACTCAATGTGTATATGGAACAACTTGATTATCCCGTCA
ATGCCAAGAGATTTCACCCGCCCCATGACCGGCACCCGCCTTATATAGGG
CACCCGCCTTATAGAGGCCTATGACTACTACTTGTAGTGGCGTTTTTATT
GGCGTTTGGGACGTTACCGACCGCGGGGTGGGGCCAAGTGAATGGAGTGC
AACGGGAAGTATTTTTCGAAGATCGTCATGGAACCGGTATTGTAACTGTT
CGGATCTCAATCAAATCTACCCCGAGAGGACGCACTCGCCCTTGTCGAGA
CTGATGCATGTACGCCTATGATGTGTGTGACTGCTGCTGTGACAGGAATG
AACCCACCCACCCCCACCCCCTCGCCCCCATTTTCCGTCGCCCCCTCGAC
CGGGTGCCGCTCGCCACATCCTATCAAAACAATAATGATAGATTGACGGC
CTGAACATCTTGACCGACCCTATGTTCTCGGAGAGAGCATCGGCCAGCCA
GATGGTGGGTCCGAAGCGGTTCAGGCCTCCAGCCCTCTCCGTGTCGGAGT
TGCCCCGCATCGACGTGGTGCTGCTGAGCCACAACCACTACGACCACCTG
GACACGGGGTCGGTGAAGGCCGTAGGGGATGGCCCGCTGTGGGTGGTACC
GTCGGGCTTGAAACGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15044:53..3021+

>mRNA_E-fasciculatus_F_contig15044.3577.1 ID=mRNA_E-fasciculatus_F_contig15044.3577.1|Name=mRNA_E-fasciculatus_F_contig15044.3577.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1080bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15044:53..3021+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGTCCCCTGCCGGCGATTGTGTCGCCTCCTACGGACGCTGGTCTTCC
GGCCCCGCTCATCATGCGTCCCCTGCCGGCGATTGTGTCGCCTCCTACGG
ACGCTGGTCTTCCGGCCCCGCTCATCGTCGAGTCCCGGGGGCTGTTCGGC
AAGCGCACCACGTACGACAACCCTTGGGCGCCGGGGATAACGGAGAAGAG
CCTTGGAGATCTTGCGAAGATGCTTCGGAGTGGGGACATGGGACACGTCC
CCACCGAGCAGGAGACAGTCGAAGACCTGCCGCAGGCGGAGGTCGAGTCC
CGGGGGCTGTTCGGCAAGCGCACCACGTACGACAACCCTTGGGCGCCGGG
GATAACGGAGAAGAGCCTTGGAGATCTTGCGAAGATGCTTCGGAGTGGGG
ACATGGGACACGTCCCCACCGAGCAGGAGACAGTCGAAGACCTGCCGCAG
GCGGAGGTGGACTTGGAGGCGATAGCGCAGCACGGCGAGGGGGACCCGAT
GCGGGTAACCTGGATAGGGCACGCCACCTTGCTAGTCCAGGTGGACTTGG
AGGCGATAGCGCAGCACGGCGAGGGGGACCCGATGCGGGTAACCTGGATA
GGGCACGCCACCTTGCTAGTCCAGATTGACGGCCTGAACATCTTGACCGA
CCCTATGTTCTCGGAGAGAGCATCGGCCAGCCAGATGGTGGGTCCGAAGC
GGTTCAGGCCTCCAGCCCTCTCCGTGTCGGAGTTGCCCCGCATCGACGTG
GTGCTGCTGAGCCACAACCACTACGACCACCTGGACACGGGGTCGGTGAA
GGCCGTAGGGGATGGCCCGCTGTGGGTGGTACCGTCGGGCTTGAAACGGT
GAATTGACGGCCTGAACATCTTGACCGACCCTATGTTCTCGGAGAGAGCA
TCGGCCAGCCAGATGGTGGGTCCGAAGCGGTTCAGGCCTCCAGCCCTCTC
CGTGTCGGAGTTGCCCCGCATCGACGTGGTGCTGCTGAGCCACAACCACT
ACGACCACCTGGACACGGGGTCGGTGAAGGCCGTAGGGGATGGCCCGCTG
TGGGTGGTACCGTCGGGCTTGAAACGGTGA
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