mRNA_E-fasciculatus_F_contig15041.3576.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI) HSP 1 Score: 233 bits (593), Expect = 3.880e-76 Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 1
Query: 1 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
+DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS
Sbjct: 88 KDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.640e-73 Identity = 111/119 (93.28%), Postives = 118/119 (99.16%), Query Frame = 1
Query: 1 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
+DYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV++LALYK KKEKPRS
Sbjct: 27 KDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE) HSP 1 Score: 222 bits (566), Expect = 1.430e-72 Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 1 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
+ YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct: 50 KSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE) HSP 1 Score: 216 bits (549), Expect = 2.610e-70 Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 1 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
+ YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GV+LLALYK+KKEKPRS
Sbjct: 27 KSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA) HSP 1 Score: 214 bits (545), Expect = 9.930e-70 Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 1 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
Q Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLISGFGR GHAVGDIPGVRFKV KVAGV+LLALYK+KKEKPRS
Sbjct: 25 QKYCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS) HSP 1 Score: 212 bits (540), Expect = 5.740e-69 Identity = 104/117 (88.89%), Postives = 113/117 (96.58%), Query Frame = 1
Query: 7 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGV+LLALYK+KKEKPRS
Sbjct: 27 YTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA) HSP 1 Score: 211 bits (538), Expect = 1.240e-68 Identity = 104/117 (88.89%), Postives = 113/117 (96.58%), Query Frame = 1
Query: 7 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
+NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct: 29 WNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA) HSP 1 Score: 210 bits (534), Expect = 4.720e-68 Identity = 103/117 (88.03%), Postives = 114/117 (97.44%), Query Frame = 1
Query: 7 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
Y K +S+TAM+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGR+GHAVGDIPGVRFKVVKVAGV+LLALYK+KKEKPRS
Sbjct: 27 YCKKNSITAMRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO) HSP 1 Score: 209 bits (533), Expect = 7.150e-68 Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 1
Query: 7 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPRS
Sbjct: 29 YNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA) HSP 1 Score: 209 bits (532), Expect = 1.020e-67 Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 1
Query: 7 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 357
YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGV+LLAL+K KKEKPR+
Sbjct: 29 YNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15041.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15041.3576.1 >prot_E-fasciculatus_F_contig15041.3576.1 ID=prot_E-fasciculatus_F_contig15041.3576.1|Name=mRNA_E-fasciculatus_F_contig15041.3576.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=120bp QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLback to top mRNA from alignment at E-fasciculatus_F_contig15041:61..1182+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15041.3576.1 ID=mRNA_E-fasciculatus_F_contig15041.3576.1|Name=mRNA_E-fasciculatus_F_contig15041.3576.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1122bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15041:61..1182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15041:61..1182+ >mRNA_E-fasciculatus_F_contig15041.3576.1 ID=mRNA_E-fasciculatus_F_contig15041.3576.1|Name=mRNA_E-fasciculatus_F_contig15041.3576.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15041:61..1182+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |