prot_E-fasciculatus_F_contig15040.3575.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig15040.3575.1
Unique Nameprot_E-fasciculatus_F_contig15040.3575.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length108
Homology
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 3.180e-52
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 89
            LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH
Sbjct:  451 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKH 539          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S0SGT6_9CHLO (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGT6_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 2.560e-44
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPY 97
            LGY+PVEVDPEDM+ +A E+P  MAAYSVSDAV+TYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCEALLMVEA+RGNIVCPNK     +  Y
Sbjct:   43 LGYNPVEVDPEDMLPFAQEQPHTMAAYSVSDAVSTYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEALLMVEAFRGNIVCPNKTASPGEKHY 139          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A0A9JF46_ARUDO (DNA polymerase epsilon catalytic subunit n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JF46_ARUDO)

HSP 1 Score: 154 bits (389), Expect = 2.120e-43
Identity = 73/108 (67.59%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 108
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+A++ +I+CPNKH  +ADL  F+   ++   T
Sbjct:  135 LGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFKAHIICPNKH--QADLEKFYNNRLLESET 240          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S2FZE0_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE0_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.850e-43
Identity = 70/90 (77.78%), Postives = 79/90 (87.78%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 90
            LGYDPVEVDPEDMVR+A E+P  MA+YSVSDAVATYYLY  YVH F+F+L TIIPMGP+DVL KGSGTLCEALLM+EA R N++CPNK V
Sbjct:  133 LGYDPVEVDPEDMVRFAKEQPEHMASYSVSDAVATYYLYSLYVHDFIFALTTIIPMGPEDVLNKGSGTLCEALLMIEACRCNVICPNKQV 222          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S2UHD4_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHD4_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.860e-43
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 90
            LGYDPVEVDPEDM+RYA ERP  MA+YSVSDAVATYYLY+ YVHMF+FSL TIIPMGP+DVLRKGSGTLCEALLMV+A   +I+CPNK +
Sbjct:  233 LGYDPVEVDPEDMLRYAKERPVHMASYSVSDAVATYYLYEKYVHMFIFSLATIIPMGPEDVLRKGSGTLCEALLMVQACTKDIICPNKQL 322          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: B8BW81_THAPS (DNA polymerase epsilon catalytic subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW81_THAPS)

HSP 1 Score: 159 bits (401), Expect = 6.400e-43
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 90
            LGYDPVEVDPEDMVRYA +RP+ MA+YSVSDAVATYYLY  YVHMF+FSLCTIIPMGP+DVLRKGSGTLCEALLMVEA   +I+CPNK V
Sbjct:  340 LGYDPVEVDPEDMVRYARDRPSHMASYSVSDAVATYYLYDKYVHMFIFSLCTIIPMGPEDVLRKGSGTLCEALLMVEACTKSIICPNKQV 429          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A5B7C0C4_DAVIN (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7C0C4_DAVIN)

HSP 1 Score: 156 bits (394), Expect = 1.190e-42
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 108
            LGYDP+EV+PEDMVR+A ERP  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AY+ N++CPNKH  ++D   F+T  ++   T
Sbjct:  405 LGYDPLEVNPEDMVRFAKERPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAYKANVICPNKH--QSDPEKFYTNQLLESET 510          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A1R3JS58_COCAP (DNA polymerase epsilon catalytic subunit n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JS58_COCAP)

HSP 1 Score: 150 bits (378), Expect = 1.580e-42
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFF 99
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+AY+ N++CP+KH    +  Y F
Sbjct:  204 LGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMWPDEVLRKGSGTLCEMLLMVQAYKANVICPSKHQSDPEKFYKF 302          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A452YAV3_AEGTS (DNA polymerase epsilon catalytic subunit n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YAV3_AEGTS)

HSP 1 Score: 157 bits (396), Expect = 1.950e-42
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFTTAIVACHT 108
            LGYDP+EV+PEDMVR+A E+P  MA+YSVSDAVATYYLY TYVH F+FSL TIIPM PD+VLRKGSGTLCE LLMV+A++ NI+CPNKH  +ADL  F+   +V   T
Sbjct:  395 LGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAFQANIICPNKH--QADLEKFYNNRLVESET 500          
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Match: A0A7S4W861_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W861_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.070e-42
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    1 LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSLCTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHV 90
            LGYDPVEVDPEDMVR+A E+P  MA YSVSDAVAT+YLY+ YVHMF+FSL TIIPM P+DVLRKGSGTLCE LLMV+A +  I+CPNK V
Sbjct:   40 LGYDPVEVDPEDMVRFAMEKPAYMAQYSVSDAVATFYLYEKYVHMFIFSLATIIPMNPEDVLRKGSGTLCETLLMVQATQKAIICPNKQV 129          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15040.3575.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC0_ECTSI3.180e-52100.00DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A7S0SGT6_9CHLO2.560e-4475.26DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A0A9JF46_ARUDO2.120e-4367.59DNA polymerase epsilon catalytic subunit n=1 Tax=A... [more]
A0A7S2FZE0_9STRA2.850e-4377.78DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S2UHD4_9STRA4.860e-4380.00DNA polymerase epsilon catalytic subunit (Fragment... [more]
B8BW81_THAPS6.400e-4383.33DNA polymerase epsilon catalytic subunit n=1 Tax=T... [more]
A0A5B7C0C4_DAVIN1.190e-4268.52DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A1R3JS58_COCAP1.580e-4270.71DNA polymerase epsilon catalytic subunit n=1 Tax=C... [more]
A0A452YAV3_AEGTS1.950e-4269.44DNA polymerase epsilon catalytic subunit n=3 Tax=A... [more]
A0A7S4W861_9STRA2.070e-4276.67DNA polymerase epsilon catalytic subunit (Fragment... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 7..64
e-value: 1.8E-8
score: 35.7
NoneNo IPR availableGENE3D3.30.342.10coord: 65..82
e-value: 1.8E-8
score: 35.7
NoneNo IPR availablePANTHERPTHR10670:SF0DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..92
NoneNo IPR availableTMHMMTMhelixcoord: 32..54
IPR029703DNA polymerase epsilon catalytic subunitPANTHERPTHR10670DNA POLYMERASE EPSILON CATALYTIC SUBUNIT Acoord: 1..92
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15040contigE-fasciculatus_F_contig15040:2282..3124 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15040.3575.1mRNA_E-fasciculatus_F_contig15040.3575.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig15040 2282..3124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig15040.3575.1 ID=prot_E-fasciculatus_F_contig15040.3575.1|Name=mRNA_E-fasciculatus_F_contig15040.3575.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
LGYDPVEVDPEDMVRYASERPTEMAAYSVSDAVATYYLYQTYVHMFVFSL
CTIIPMGPDDVLRKGSGTLCEALLMVEAYRGNIVCPNKHVRRADLPYFFT
TAIVACHT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR029703POL2
IPR036397RNaseH_sf