mRNA_E-fasciculatus_F_contig15040.3574.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI) HSP 1 Score: 237 bits (604), Expect = 4.760e-70 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query: 7 SEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
SEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL
Sbjct: 540 SEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 658
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A7S3M0P9_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0P9_9STRA) HSP 1 Score: 185 bits (470), Expect = 9.100e-57 Identity = 88/120 (73.33%), Postives = 100/120 (83.33%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q +PL FH+GHL+ESETYIGGHVECLE GVFR+D+P KF LVPSALQ LI N+DRDLTF +EVE G+QR NYDEVR +I+ +LEMLRDSP REE P IYHLDV AMYPNIIL+NRL
Sbjct: 8 QVDPLESFHEGHLLESETYIGGHVECLEAGVFRADIPAKFNLVPSALQQLIHNIDRDLTFTLEVEHGLQRSDAVNYDEVRQQIVSKLEMLRDSPHREESPIIYHLDVGAMYPNIILTNRL 127
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A1E7F5I3_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5I3_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.670e-50 Identity = 87/120 (72.50%), Postives = 103/120 (85.83%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q +PL KFH GHL+ESETYIGG VECLETGV+RSD+ +F LVP+A Q LIDN+DRDL FAIEVE+G+ R ++NY+EVRSEIIE+LE+LRD P R E+P+IYHLDV AMYPNIILSNRL
Sbjct: 454 QVDPLAKFHKGHLLESETYIGGKVECLETGVYRSDVEYEFDLVPTAFQQLIDNIDRDLCFAIEVEAGMDRSEIANYEEVRSEIIEELELLRDRPKRMEKPYIYHLDVGAMYPNIILSNRL 573
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A448YYZ1_9STRA (DNA polymerase epsilon catalytic subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYZ1_9STRA) HSP 1 Score: 180 bits (456), Expect = 4.240e-50 Identity = 87/120 (72.50%), Postives = 101/120 (84.17%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q +PL KFH GHL+ESETYIGG VECLETGV+RSD+ +F LVPSA Q LIDN+DRDL FAIEVE+G+ R ++NY+EVRS+IIE LE+LRD P R E P+IYHLDV AMYPNIILSNRL
Sbjct: 577 QVDPLAKFHKGHLLESETYIGGKVECLETGVYRSDVQYEFDLVPSAFQQLIDNIDRDLCFAIEVEAGIDRSEITNYEEVRSKIIEALELLRDRPKRVENPYIYHLDVGAMYPNIILSNRL 696
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A1J3DZF9_NOCCA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DZF9_NOCCA) HSP 1 Score: 164 bits (414), Expect = 1.140e-48 Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q++P KF+ L+ESETYIGGHVECLE+GVFRSD+P F+L SA Q LIDN+DRDL +AI VE ++ D++SNYDEVR EI E+LE LRD P+REE P IYHLDVAAMYPNIIL+NRL
Sbjct: 78 QADP-EKFYQDRLLESETYIGGHVECLESGVFRSDIPTNFKLDTSAYQQLIDNLDRDLEYAITVEGKMRMDSISNYDEVRDEIKEKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRL 196
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.260e-48 Identity = 86/120 (71.67%), Postives = 100/120 (83.33%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q E +FH GHL+ESETY+GGHVECLETGV+RSD+ KFRLVPSALQALIDNVDRDL FA+EVE + + V NY EV++EIIE+L LRD+PLR+E P IYHLDV AMYPNIIL+NRL
Sbjct: 532 QVEAPMRFHKGHLLESETYVGGHVECLETGVYRSDIDYKFRLVPSALQALIDNVDRDLRFAVEVEGHARVENVVNYAEVKAEIIERLAELRDTPLRDEPPLIYHLDVGAMYPNIILTNRL 651
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A452YAV6_AEGTS (DNA polymerase epsilon catalytic subunit n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YAV6_AEGTS) HSP 1 Score: 161 bits (407), Expect = 1.350e-47 Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 1
Query: 1 HQSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
HQ++ L KF++ LVESETYIGGHVECLETGVFRSDLP KF+L PSA + LI+N+DRDL +AI VE + D+V+NYDEV+ I ++L LRD P REE P IYHLDVAAMYPNIIL+NRL
Sbjct: 68 HQAD-LEKFYNNRLVESETYIGGHVECLETGVFRSDLPTKFQLEPSAFEQLIENLDRDLQYAIAVEGKLDIDSVTNYDEVKDAIKQKLVSLRDHPTREECPLIYHLDVAAMYPNIILTNRL 187
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: B7GD85_PHATC (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD85_PHATC) HSP 1 Score: 172 bits (437), Expect = 1.530e-47 Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q + + KFH GHL+ESETYIGG VECLETGV+RSD+ +F L PSA Q LIDNVDRDLTFAIEVE G QRD + NY E+R++I+ +LE LRD P R E+P+IYHLDV AMYPNIIL+NRL
Sbjct: 446 QVDEVAKFHKGHLLESETYIGGKVECLETGVYRSDIEYEFDLQPSAFQQLIDNVDRDLTFAIEVEGGQQRDDIVNYGEIRTQIVHELEQLRDRPQRTEKPYIYHLDVGAMYPNIILTNRL 565
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A1Z5JPB4_FISSO (DNA polymerase epsilon catalytic subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPB4_FISSO) HSP 1 Score: 172 bits (437), Expect = 1.540e-47 Identity = 82/120 (68.33%), Postives = 98/120 (81.67%), Query Frame = 1
Query: 4 QSEPLTKFHDGHLVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
Q++PL KFH GHL+ESETYIGG VECLETGV+RSD+ F L PSA Q LIDN+DRDL FAIEVE G +++ NYDE+R +I+++LE LRD P R+E P+IYHLDV AMYPNIILSNRL
Sbjct: 540 QTDPLAKFHQGHLLESETYIGGKVECLETGVYRSDIEYDFDLKPSAFQQLIDNIDRDLVFAIEVEGGKKKEDFVNYDEIRGKIVKELEKLRDRPKRKETPYIYHLDVGAMYPNIILSNRL 659
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Match: A0A1J3FYX3_NOCCA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3FYX3_NOCCA) HSP 1 Score: 155 bits (392), Expect = 8.650e-47 Identity = 76/108 (70.37%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 40 LVESETYIGGHVECLETGVFRSDLPEKFRLVPSALQALIDNVDRDLTFAIEVESGVQRDTVSNYDEVRSEIIEQLEMLRDSPLREEEPFIYHLDVAAMYPNIILSNRL 363
L+ESETYIGGHVECLE+GVFRSD+P F+L SA Q LIDN+ RDL +AI VE ++ D++SNYDEV+ EI E+LE LRD P+REE P IYHLDVAAMYPNIIL+NRL
Sbjct: 4 LLESETYIGGHVECLESGVFRSDIPTNFKLDTSAYQQLIDNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRL 111 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15040.3574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15040.3574.1 >prot_E-fasciculatus_F_contig15040.3574.1 ID=prot_E-fasciculatus_F_contig15040.3574.1|Name=mRNA_E-fasciculatus_F_contig15040.3574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp MPRDGSLPERSPGEVQAGAERASGADRQRGPRPDVRHRGRERGTARHRQQback to top mRNA from alignment at E-fasciculatus_F_contig15040:460..1737- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig15040.3574.1 ID=mRNA_E-fasciculatus_F_contig15040.3574.1|Name=mRNA_E-fasciculatus_F_contig15040.3574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1278bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15040:460..1737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15040:460..1737- >mRNA_E-fasciculatus_F_contig15040.3574.1 ID=mRNA_E-fasciculatus_F_contig15040.3574.1|Name=mRNA_E-fasciculatus_F_contig15040.3574.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15040:460..1737- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |