mRNA_E-fasciculatus_F_contig1504.3572.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig1504.3572.1
Unique Name	mRNA_E-fasciculatus_F_contig1504.3572.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig1504.3572.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 2.580e-71
Identity = 172/226 (76.11%), Postives = 181/226 (80.09%), Query Frame = 1

Query:  274 RQTFASGSGGGGGGDGPEKVAATDGNNEWYNGQWKAGAFHGHGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXEGDLWCDLRQGYGVHRGPESTYDXXXXXXXXXXXGKLTDKDGNVFEGFFREGVWDNGQLTGQATVQYHNGDRYTGGFEGGQRSGEGTMYAAKTGYEXXXXXXXXXXXXXGRLRLPCGASVEGLWILGKLVGNSKFSFAPDSEWNDPNY 951
            RQTFASG GGGG GD PEKVAAT G NEWY+GQWK+GAFHG GEYHFA+SGDVYVXXXXXXXXXXXXXXXXXXXXXXX   LWCDLR G+GVH GP+STYD XXXXXXXXXX KL+DKDGNVFEGFFRE                          E G+RSGEGTM+AAKT   XXXXXXXXXXXXX RLRLPCGASVEGLWILG LVGNSKFSFAPDSEWNDP+Y
Sbjct:  134 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359

[Close]

BLAST of mRNA_E-fasciculatus_F_contig1504.3572.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.600e-18
Identity = 62/151 (41.06%), Postives = 71/151 (47.02%), Query Frame = 1

Query:  331 VAATDGNNEWYNGQWKAGAFHGHGEYHFADSGDVYVXXXXXXXXXXXXXXXXXXXXXXXEGDLWCDLRQGYG-VHRGPESTYDXXXXXXXXXXXGKLTDKDGNVFEGFFREGVWDNGQLTGQATVQYHNGDRYTGGFEGGQRSGEGTMYAA 780
             AAT G NEWY+ QWKAGA HG G   FA SGD+ V                        G    +   G G +  G E   D           G                GVWDNGQL+GQAT QY+ G+RYTGGFE G+RSGEGTM+AA
Sbjct:   41 AAATGGENEWYDKQWKAGACHGQGGIRFAGSGDMCV------------------------GSWVGNQMHGKGKIVHGGEGGEDEGTHNTSVNCVGS--------------RGVWDNGQLSGQATAQYNYGNRYTGGFERGRRSGEGTMFAA 153

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig1504.3572.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig1504.3572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G0U8_ECTSI	2.580e-71	76.11	Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=...	[more]
D7G0U9_ECTSI	7.600e-18	41.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig1504	contig	E-fasciculatus_F_contig1504:5283..9262 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	236.9
Seed ortholog evalue	1.3e-59
Seed eggNOG ortholog	2880.D7G0U8
EggNOG free text desc.	Translation initiation factor IF-2, N-terminal region
EggNOG OGs	COG5253@1,KOG0229@2759
COG Functional cat.	T
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Ec32 ortholog description	MORN motif
Ec32 ortholog	Ec-23_002230.1
Exons	8
Model size	954
Cds size	942
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927984.1948192-UTR-E-fasciculatus_F_contig1504:9250..9262	1622927984.1948192-UTR-E-fasciculatus_F_contig1504:9250..9262	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1504 9251..9262 -
1695995778.172379-UTR-E-fasciculatus_F_contig1504:9250..9262	1695995778.172379-UTR-E-fasciculatus_F_contig1504:9250..9262	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig1504 9251..9262 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig1504.3572.1	prot_E-fasciculatus_F_contig1504.3572.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig1504 5283..9250 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig1504:5283..9262-
coding sequence from alignment at E-fasciculatus_F_contig1504:5283..9262-

protein sequence of mRNA_E-fasciculatus_F_contig1504.3572.1

>prot_E-fasciculatus_F_contig1504.3572.1 ID=prot_E-fasciculatus_F_contig1504.3572.1|Name=mRNA_E-fasciculatus_F_contig1504.3572.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=314bp
MWMNGMRHGTGKLTFTNGSTYSGSWERDARRGQDGKACGTGTQTFGNGDR
YDGDWKDGMMSGKGTYVSASGDMYEGEWTDDEKNGKGRQTFASGSGGGGG
GDGPEKVAATDGNNEWYNGQWKAGAFHGHGEYHFADSGDVYVGSWEGNQM
HGKGKIVYGGDGGEYEGDLWCDLRQGYGVHRGPESTYDGAWTNDRRHGHG
KLTDKDGNVFEGFFREGVWDNGQLTGQATVQYHNGDRYTGGFEGGQRSGE
GTMYAAKTGYEFTGTFEKGVKNGSGRLRLPCGASVEGLWILGKLVGNSKF
SFAPDSEWNDPNY*

mRNA from alignment at E-fasciculatus_F_contig1504:5283..9262-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig1504.3572.1 ID=mRNA_E-fasciculatus_F_contig1504.3572.1|Name=mRNA_E-fasciculatus_F_contig1504.3572.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3980bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1504:5283..9262- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTACGAAGGAATGTGGATGAACGGCATGCGCCATGGCACGGTGAGTTC
GGATAAAATGCCCGGCAACTACGCGTATGTGCGCAGTTGCTGTGATGTAC
AAATACACAGCAACCTTGGCTTGTAGGTCACCATCGCGTCGCCCTGCGAG
TGTCACGCAATATGAGTACCGCGGACATGGCAGCACAAAGGAAAGTAGTG
GGCCAACCGACTTCTACAGTGTTCTCGAACTATCTGGGTATGGTGCTGTC
ACTGGCATGGATGGGCCGAAAGGAGTCGCACCAACAGAATAATTTTCTAT
AATTCACGTTCCCTTCAAGCAGCTAGCGGAATACAGCAGATACTGACTTT
CGCGCGTGTGGACATATTGCTCTCGTCACCGCAGGTGCATATTGATCTTC
GGAATGACTTCGATTTGAAGTGAAATATATGTTCACCGCTTTCCGCGCCA
ACGGGTCGAGTTGCTGCTGATGCCCCGCCCACCCCAACACCTGAGAATCG
GCGCTAATCACGTATACCCTACTTGTATCCGAATGACACTGGATTCATTC
TCCGGCTTTGTCTGGAGAAGTGAACATGTAGAAGCTGTTTCTGTGAAGCC
CGTCGAGACGTTGCAGGTGACATTGACCAACCACCTATCCCAGTGAAGTC
ACAGTTCCGTCAACGTGACTCACGCGTCCCTCATTTACCAAACCTTCGAC
CATTTCCTTGTGTAATGAGACGCATCGCTCTTCGGTCCTGCCCTACATGT
TTAAGGGTAAACTCACTTTCACGAACGGCTCGACATACAGCGGCTCCTGG
GAAAGAGATGCAAGACGAGGCCAAGGTATGCAGCGAATATGTGTAGGACA
TTTGTACCGCATCTTGGTTTGGGGTAGATATTCGAACCGTCATTAGAGGT
GTGCAGATCCTTCCGCAAAATCGACAGTGTTCACTGATGGGGGTGGGGTG
CACCATGGACGTGCATCCCACCGGATCAGCGATTTAGTCAAGATGCTTGC
GGCTTGGTCTGTGAGTGAAATGGAGGCCTCAAGGCCGGAGGGTGGGTCGT
GTCGGGGTGACCCTGGCCAAAAAATAGCTTTTGACCTCTACTATTTCAGT
TCCACTTGGAGTCTCTATGCGTATGAGTGCGGGGCTCTTGACTGTTTCTC
CCATCTTCACAGTTGTGATCGGGATAACGTGGGTCCACATTAAGTGCGTC
GAGATTGAGGGATGAAATCATGTGAGTAATAGGGTTTATCTCGACGCTGC
GGCCGGTCTCCATAACGTTCGCACCCTCACGGCGAATAGCGGTTCTCCGA
CCAATCCGTACACTGCCATCAAAGACCCGAGGAATGGTGGCCATGCAACC
GTCGGTCGTTTTCGGATCCGGTAAACCACGCATCTCAGCGACCCCCTCAA
CGTTCACGTATGCTGCGGGTGACCGTCGTACACCTGAATCCACTCATCGA
TGGTCAAACTGTCACCGACCACAAGGTAAATGTTTCGTATCCACAACAAA
TGTTTCCTTCATAGTGAATATTCCTCAGAAACCGGTATTCACATGGCTCC
AACACGCGCCTTTCTCGTTGAGGACCACGGCCACATTCGGAGTTCCCGCA
TACCGCAATGTCCTGAGGGAGTGAAGAATCGGTCAAGAATCGCATGGGCG
CGTTTGTGCATGCCTCCAGGAACATGCCGCTACACGAACGGAAATACCTA
CACGGGTTCATGGAAAGACGGAAAAGCTTGTGGTACCGGGACACAGACCT
TCGGTAACGGTGATCGCTACGACGGAGACTGGAAAGATGGCATGATGAGC
GGCAAGGTAACTTGCGCCAGCATGCTACTTGACATACCAGTTGTAGTGAG
TTTTCAATAGACCACGCGTTGCCGCAGCTTTAGACTTTCCCCCTGAATAT
CCTTTGGCGATCGCTGCATCGGGCTCGGCGGTGCGCTGGGTGATGTTCGC
CAGGGCACCTACGTCAGTGCCAGTGGAGACATGTACGAAGGGGAGTGGAC
GGACGATGAGAAGAACGGCAAGGGACGTCAGACATTTGCCAGTGGTAGCG
GGGGCGGCGGCGGAGGGGATGGGCCCGAGAAGGTGGCAGCTACCGATGGC
AATAACGAGTGGTACAACGGCCAATGGAAAGCTGGAGCCTTTCACGGTCA
TGGTGAGCCTTGCTCCGACTTACCCCGACAGAGCAAGCACGGATCTTGCT
GCAGTGCATGAGTGTGAAGCATATCTGACCCCTGGTACAGGACGGCTTTC
CGGCCCACTCCAGACAACAAAAAAGATAACAGCGCGCTGTCTGCTAAACG
CTTTTCTTGGCGTCTATCCACCCGCGTAAATCACCCGGTAGCCTCTTGGG
AGGACATTGCAGCAAGCATGCGGCCTTCACACTCTATTTGGCCAATGCGA
AATTGAAGCTGATATGTTTCCACGCCCCAAGTGCACGTTTGATGCACAGG
AGAATACCACTTCGCTGATAGCGGCGACGTGTATGTCGGTTCCTGGGAGG
GGAACCAAATGCACGGGAAAGGGAAGATCGTGTATGGCGGCGACGGTGGA
GAGTATGAAGGTGGGCTCGCGTCTAGCTGGAACCTTACGCCGGGCAGGCA
TCTCACACGACTAGACCCACGATCGAGTGAGTGGTGGAGTATATCGCCTG
AATTTTGGGGCATGTCATCATTCGCATGGGGTGCTGACGAACCGCCCATA
TTCGACAGGGGACCTATGGTGTGATCTTCGACAAGGTTACGGCGTACACC
GTGGCCCCGAATCTACCTATGACGGTGCCTGGACCAATGACCGTAGGCAC
GGCCATGGGAAGCTGACCGACAAGGACGGGAATGTGTTCGAGGGTTTCTT
CAGGGAAGGTTTGGACCGGAACCAACATGGAACTGGGTGTTCCGCGCGTA
GGACAACGAGACACTGATACTTGAGGTAGCTGAGGATATCTGGGTAGGAG
TGCAGCTGCCGGTGGTGACACGGCGATGGGCAATCATCGCTTGTTGCGCA
TTGACTACCGTGGTGCTTCACCGCCGACAGCACTGTTCAATGAGTTTTCA
CCTCCCTCTCCACGCAGGAGAAAAGCATGGCAACGGTCAACTCAAGTCAG
CGGCAGGCGACGAGATTGAAGGTGGTGACATAGACGTCCTCGTCTGTATT
TGAAGGACTTCCGTGTAGCGTTTGTACGTAGCGTTCATGAAATTCTTGTC
GTTGCTGCCCCGCACCAGAGTGAACCAGTGTGTGACGATGATGAGTGTCT
TGGCCTTTTTCCTGAAAAGCACGTGGTACCTGTGGTTGACGGTGCTCGGT
CTTTGGACACACACTTGGTTGCACGGGAGCTGTACCGTAGACTAGGATGT
ACTCAACCGGCTAGGCAGTGAAAATTGCGCTGATGCGTCCTGGAATATGG
TAACGCAAATTGTACTTCCGTGGATTGTGTTGGGTGGAAGGTGTGTGGGA
CAATGGGCAGCTCACCGGCCAAGCGACGGTTCAGTACCACAATGGCGATC
GGTACACTGGAGGCTTCGAAGGGGGCCAAAGGAGTGGCGAAGGTACCATG
TACGCTGCGAAGACAGGGTGAGACAATAAGGGAGAAGGCCATTGTAGAGT
GCACGGAGAGCTACCCAAACCATTTTGTTTCATACAAGTACGTGCTTTTG
ACTGAATCTCCGCGATGTTGTGGTTCCTGGGGCGCATACGCAGTCGTCGC
CTGGGGGGTACATTATTGATGTTTGTCGAGTATGGAACATCAGACCAACA
GCTCTTGATGCCGTAAACTCCTGTACGTTTTCGTCCATCTCTCTTTCGAA
ATCATACGTGCAAGTTACGAGTTCACGGGCACCTTCGAAAAGGGCGTCAA
GAACGGCTCGGGACGTTTGCGGCTTCCGTGCGGTGCGAGCGTGGAAGGGC
TATGGATCTTGGGCAAGCTTGTCGGCAACTCGAAATTTTCGTTTGCACCT
GACTCCGAGTGGAATGACCCGAATTACTGA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1504:5283..9262-

>mRNA_E-fasciculatus_F_contig1504.3572.1 ID=mRNA_E-fasciculatus_F_contig1504.3572.1|Name=mRNA_E-fasciculatus_F_contig1504.3572.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1884bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1504:5283..9262- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGGATGAACGGCATGCGCCATGGCACGATGTGGATGAACGGCATGCG
CCATGGCACGGGTAAACTCACTTTCACGAACGGCTCGACATACAGCGGCT
CCTGGGAAAGAGATGCAAGACGAGGCCAAGGGTAAACTCACTTTCACGAA
CGGCTCGACATACAGCGGCTCCTGGGAAAGAGATGCAAGACGAGGCCAAG
ACGGAAAAGCTTGTGGTACCGGGACACAGACCTTCGGTAACGGTGATCGC
TACGACGGAGACTGGAAAGATGGCATGATGAGCGGCAAGACGGAAAAGCT
TGTGGTACCGGGACACAGACCTTCGGTAACGGTGATCGCTACGACGGAGA
CTGGAAAGATGGCATGATGAGCGGCAAGGGCACCTACGTCAGTGCCAGTG
GAGACATGTACGAAGGGGAGTGGACGGACGATGAGAAGAACGGCAAGGGA
CGTCAGACATTTGCCAGTGGTAGCGGGGGCGGCGGCGGAGGGGATGGGCC
CGAGAAGGTGGCAGCTACCGATGGCAATAACGAGTGGTACAACGGCCAAT
GGAAAGCTGGAGCCTTTCACGGTCATGGGCACCTACGTCAGTGCCAGTGG
AGACATGTACGAAGGGGAGTGGACGGACGATGAGAAGAACGGCAAGGGAC
GTCAGACATTTGCCAGTGGTAGCGGGGGCGGCGGCGGAGGGGATGGGCCC
GAGAAGGTGGCAGCTACCGATGGCAATAACGAGTGGTACAACGGCCAATG
GAAAGCTGGAGCCTTTCACGGTCATGGAGAATACCACTTCGCTGATAGCG
GCGACGTGTATGTCGGTTCCTGGGAGGGGAACCAAATGCACGGGAAAGGG
AAGATCGTGTATGGCGGCGACGGTGGAGAGTATGAAGGAGAATACCACTT
CGCTGATAGCGGCGACGTGTATGTCGGTTCCTGGGAGGGGAACCAAATGC
ACGGGAAAGGGAAGATCGTGTATGGCGGCGACGGTGGAGAGTATGAAGGG
GACCTATGGTGTGATCTTCGACAAGGTTACGGCGTACACCGTGGCCCCGA
ATCTACCTATGACGGTGCCTGGACCAATGACCGTAGGCACGGCCATGGGA
AGCTGACCGACAAGGACGGGAATGTGTTCGAGGGTTTCTTCAGGGAAGGG
GACCTATGGTGTGATCTTCGACAAGGTTACGGCGTACACCGTGGCCCCGA
ATCTACCTATGACGGTGCCTGGACCAATGACCGTAGGCACGGCCATGGGA
AGCTGACCGACAAGGACGGGAATGTGTTCGAGGGTTTCTTCAGGGAAGGT
GTGTGGGACAATGGGCAGCTCACCGGCCAAGCGACGGTTCAGTACCACAA
TGGCGATCGGTACACTGGAGGCTTCGAAGGGGGCCAAAGGAGTGGCGAAG
GTACCATGTACGCTGCGAAGACAGGGTGTGTGGGACAATGGGCAGCTCAC
CGGCCAAGCGACGGTTCAGTACCACAATGGCGATCGGTACACTGGAGGCT
TCGAAGGGGGCCAAAGGAGTGGCGAAGGTACCATGTACGCTGCGAAGACA
GGTTACGAGTTCACGGGCACCTTCGAAAAGGGCGTCAAGAACGGCTCGGG
ACGTTTGCGGCTTCCGTGCGGTGCGAGCGTGGAAGGGCTATGGATCTTGG
GCAAGCTTGTCGGCAACTCGAAATTTTCGTTTGCACCTGACTCCGAGTGG
AATGACCCGAATTACTGATTACGAGTTCACGGGCACCTTCGAAAAGGGCG
TCAAGAACGGCTCGGGACGTTTGCGGCTTCCGTGCGGTGCGAGCGTGGAA
GGGCTATGGATCTTGGGCAAGCTTGTCGGCAACTCGAAATTTTCGTTTGC
ACCTGACTCCGAGTGGAATGACCCGAATTACTGA