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Homology
BLAST of mRNA_E-fasciculatus_F_contig15037.3571.1 vs. uniprot
Match: A0A6H5JKF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF0_9PHAE) HSP 1 Score: 369 bits (947), Expect = 6.790e-122 Identity = 223/290 (76.90%), Postives = 233/290 (80.34%), Query Frame = 1
Query: 1 AIQGRLLRPDLEISVISRDCEFFLDFSRGVLEARSLFEVSTVGGGGPGEPETLEMAQIKGTACVDTRTQTCTQRLLSPQLRMVFDDAMRASARVLALHSFMDRGAGMGEFETGVXXXXXXXXXXNSLRRMESLRDSLARASTDGMGRAAAAGTGLLANVVAGVGSAIGASRTGTLAGDPLYVGGDGGGSNSEGPKSTITDEAALVQLYRRADPAEEAGRAAP--GXXXXXXXXXXXXXXXXXXXPDEGTPAINSFFHHGGAYSEADSSGVGAGSSSSSPLAGPHGGNGQH 864
AIQGRLLRPDLEISVISRDCEFFLDFS GVLEA SLFEVSTVGGGGPG PETLE+A IKGTA VD+R+QTCTQRLLSPQLRMVFDDAMR SARVLALHSFMDRGAGM EF GV +SLRR+ SLRDSLARASTDGMGRAAAAGTGLLANVVAGVGSAIGASR GT AGD +V GGG NSEGPKSTITDEA L+QLYRR D AEE GRAAP XXXXXXXX PDEGTP INSF+ HGG + AD SGVGAGSS S PLAG GNG+H
Sbjct: 199 AIQGRLLRPDLEISVISRDCEFFLDFSSGVLEAHSLFEVSTVGGGGPGAPETLEIAHIKGTASVDSRSQTCTQRLLSPQLRMVFDDAMRTSARVLALHSFMDRGAGMDEFGAGVGVGGLSSSS-SSLRRIGSLRDSLARASTDGMGRAAAAGTGLLANVVAGVGSAIGASRNGTPAGDFFHV---GGGGNSEGPKSTITDEAPLLQLYRRTDLAEEEGRAAPVAAATAGATGDAXXXXXXXXVAPDEGTPVINSFYPHGGECTGADGSGVGAGSSRSPPLAGRRVGNGRH 484
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-09_002270.1 |
| Exons | 4 |
| Model size | 870 |
| Cds size | 870 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig15037.3571.1 >prot_E-fasciculatus_F_contig15037.3571.1 ID=prot_E-fasciculatus_F_contig15037.3571.1|Name=mRNA_E-fasciculatus_F_contig15037.3571.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=290bp
AIQGRLLRPDLEISVISRDCEFFLDFSRGVLEARSLFEVSTVGGGGPGEP
ETLEMAQIKGTACVDTRTQTCTQRLLSPQLRMVFDDAMRASARVLALHSF
MDRGAGMGEFETGVGVGGLSNSNSNSLRRMESLRDSLARASTDGMGRAAA
AGTGLLANVVAGVGSAIGASRTGTLAGDPLYVGGDGGGSNSEGPKSTITD
EAALVQLYRRADPAEEAGRAAPGAAATAAGSACTTTTTTTVAPDEGTPAI
NSFFHHGGAYSEADSSGVGAGSSSSSPLAGPHGGNGQHGA back to topmRNA from alignment at E-fasciculatus_F_contig15037:889..3134+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig15037.3571.1 ID=mRNA_E-fasciculatus_F_contig15037.3571.1|Name=mRNA_E-fasciculatus_F_contig15037.3571.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15037:889..3134+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGATCCAGGGCCGCCTTCTTCGGCCAGATTTGGAGATATCAGTCATCAG
CAGGTGAGCCTTTCAACGGTCCTCTCACCTTCCTGAGGATGCACGTTCGT
AGGATATGAATAATGTACCCTTACCCTGAGCAAAACAGATCTAATCTCAA
GGCTTCGGGTGAGGATATGAATATGTTCATCCTCCCCTTTTCGCTACGCT
GTTACGCACGCAGAGATTGCGAGTTTTTCCTGGACTTCAGCAGAGGCGTC
TTGGAGGCGCGCTCGTTATTCGAGGTTTCCACCGTGGGCGGTGGCGGGCC
GGGGGAGCCGGAGACGCTTGAAATGGCTCAGATCAAGGGGACGGCGTGCG
TGGACACTCGGACACAGGTTAGTTGCTGTTGTGGTGGTGCTGTCTTGTGC
GTGGGGGAATGTGTGAGTGATTTTCATCCATTAGTATCGACCGCGCGCTA
TCCGGCTGACAAAACGAAAATACGCCGGTACCGTGTCAGCGGGTACAATT
CAAGGTCCCTGCAATGGGACCGAAATGTTTCTGTGGGTGTGTACAGCTGT
GTCATCAGCGCTAGCAGTCGGAAAGTGTCACATACAACGCCTAATGCCTA
TTTCCTTGCGGTTTCACCATACGTGCTTTTGGTACGCGTACGTTGTCCAG
TATATACGGCATTTCGTTTGGGCACCCCTTTCAGAACCCCACTTCACCGG
TCTTCTGTTATCATAGCACCTGCCATCTCCTGTGACACGTCACGTGTGAT
TCACTTGACTGGATTGTCGTTTGTCCTCGTCTGTACCACCCTCTCATCCT
CCTCCTTCTCCTCCTCGTATCCCCCCCCGGCACACACGCGACTGCTCATT
TACGTCCATCTGGTGGGATGGCGGGCGAATAAAACGGTCCACATCGGCGA
CTTTTCGTTCCGCTAGACGTGCACCCAGCGCCTGCTCTCGCCCCAGCTGC
GCATGGTGTTCGACGACGCCATGCGCGCCTCGGCGAGGGTGCTTGCGCTC
CACTCCTTTATGGACAGGGGGGCTGGCATGGGCGAGTTTGAGACGGGCGT
GGGAGTGGGCGGCCTCAGCAACAGCAACAGCAACAGCTTGCGTCGGATGG
AGTCGCTGCGAGATAGTCTGGTGAGAGAATTGTTGTCTGTAATAGAAGCG
CGTCTACGCTTCTTGCGTGCCGCCTGAACTTCGGATCGATATGGGATTTT
GCAGCATCAAATGGCTTTCGCTAGTGCCACGTCTCGCAGGCCAGCTTTTT
TTCACCGCGTTGTGTAAACACGATACACGTCGCCAATGAATCAATGCCTC
ATCTTGCAAAATGTTGTTTCTGTCATGCTACGTATCTTTTTTCGTCTCCG
CCATCGACGTGTAGTATGTGCTTCTCCGATCCCGAAGACAAACGACATAC
CCGTTTTTGTGTCCCCCATCCCGTACTTTCGATGACACGCCGTCGTGCTG
TCCAGTCTCCGCCGCTGTACCCTTTAAGCAGCGGATAGAAAGCTATGACT
CCTGTGGATCAAGGAGATGAACCCTACTTCCCCATCCAAAGACAAGAAAT
GATACGAACGTCGTTGAGCGTATCGAACTGTGTGCAGCGGCTCTAACGGT
GCTCCTACTAGTATATCCGCAAGAAGTACCGGAAACCCTATCAAAGGACT
CACGCAGTGGACGACGACGCCCTCCCTCTCGCCCCTTTCCGAGTGCAAGG
CCCCCCTGGCTCACCATTGGACCCCACACTCTCTTTCTCAACTCCCCGCC
GCTCGCTGCCCATGCCCTCTGTTCCGAACGACCCAAGGCACGTGCTAGCA
CGGACGGCATGGGACGCGCGGCGGCGGCAGGGACGGGCCTCCTCGCCAAT
GTCGTTGCAGGCGTGGGTTCGGCAATAGGAGCATCGAGAACAGGGACGCT
TGCCGGAGATCCCTTGTATGTCGGCGGCGACGGCGGCGGAAGCAACAGCG
AGGGTCCAAAGAGCACTATCACCGACGAGGCGGCGCTGGTGCAGCTGTAC
AGGAGGGCCGACCCCGCCGAGGAGGCGGGGCGGGCAGCGCCCGGGGCGGC
GGCGACCGCTGCCGGCAGTGCTTGTACTACCACCACCACCACCACCGTCG
CCCCCGATGAAGGCACGCCGGCCATCAACTCTTTTTTCCACCACGGCGGC
GCATATTCCGAGGCCGACAGTAGCGGTGTCGGCGCGGGTTCGTCATCGTC
GTCGCCCTTGGCCGGGCCCCACGGCGGCAACGGCCAACACGGTGCT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig15037:889..3134+ >mRNA_E-fasciculatus_F_contig15037.3571.1 ID=mRNA_E-fasciculatus_F_contig15037.3571.1|Name=mRNA_E-fasciculatus_F_contig15037.3571.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15037:889..3134+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGATCCAGGGCCGCCTTCTTCGGCCAGATTTGGAGATATCAGTCATCAG
CAGGCGATCCAGGGCCGCCTTCTTCGGCCAGATTTGGAGATATCAGTCAT
CAGCAGAGATTGCGAGTTTTTCCTGGACTTCAGCAGAGGCGTCTTGGAGG
CGCGCTCGTTATTCGAGGTTTCCACCGTGGGCGGTGGCGGGCCGGGGGAG
CCGGAGACGCTTGAAATGGCTCAGATCAAGGGGACGGCGTGCGTGGACAC
TCGGACACAGAGATTGCGAGTTTTTCCTGGACTTCAGCAGAGGCGTCTTG
GAGGCGCGCTCGTTATTCGAGGTTTCCACCGTGGGCGGTGGCGGGCCGGG
GGAGCCGGAGACGCTTGAAATGGCTCAGATCAAGGGGACGGCGTGCGTGG
ACACTCGGACACAGACGTGCACCCAGCGCCTGCTCTCGCCCCAGCTGCGC
ATGGTGTTCGACGACGCCATGCGCGCCTCGGCGAGGGTGCTTGCGCTCCA
CTCCTTTATGGACAGGGGGGCTGGCATGGGCGAGTTTGAGACGGGCGTGG
GAGTGGGCGGCCTCAGCAACAGCAACAGCAACAGCTTGCGTCGGATGGAG
TCGCTGCGAGATAGTCTGACGTGCACCCAGCGCCTGCTCTCGCCCCAGCT
GCGCATGGTGTTCGACGACGCCATGCGCGCCTCGGCGAGGGTGCTTGCGC
TCCACTCCTTTATGGACAGGGGGGCTGGCATGGGCGAGTTTGAGACGGGC
GTGGGAGTGGGCGGCCTCAGCAACAGCAACAGCAACAGCTTGCGTCGGAT
GGAGTCGCTGCGAGATAGTCTGGCACGTGCTAGCACGGACGGCATGGGAC
GCGCGGCGGCGGCAGGGACGGGCCTCCTCGCCAATGTCGTTGCAGGCGTG
GGTTCGGCAATAGGAGCATCGAGAACAGGGACGCTTGCCGGAGATCCCTT
GTATGTCGGCGGCGACGGCGGCGGAAGCAACAGCGAGGGTCCAAAGAGCA
CTATCACCGACGAGGCGGCGCTGGTGCAGCTGTACAGGAGGGCCGACCCC
GCCGAGGAGGCGGGGCGGGCAGCGCCCGGGGCGGCGGCGACCGCTGCCGG
CAGTGCTTGTACTACCACCACCACCACCACCGTCGCCCCCGATGAAGGCA
CGCCGGCCATCAACTCTTTTTTCCACCACGGCGGCGCATATTCCGAGGCC
GACAGTAGCGGTGTCGGCGCGGGTTCGTCATCGTCGTCGCCCTTGGCCGG
GCCCCACGGCGGCAACGGCCAACACGGTGCTGCACGTGCTAGCACGGACG
GCATGGGACGCGCGGCGGCGGCAGGGACGGGCCTCCTCGCCAATGTCGTT
GCAGGCGTGGGTTCGGCAATAGGAGCATCGAGAACAGGGACGCTTGCCGG
AGATCCCTTGTATGTCGGCGGCGACGGCGGCGGAAGCAACAGCGAGGGTC
CAAAGAGCACTATCACCGACGAGGCGGCGCTGGTGCAGCTGTACAGGAGG
GCCGACCCCGCCGAGGAGGCGGGGCGGGCAGCGCCCGGGGCGGCGGCGAC
CGCTGCCGGCAGTGCTTGTACTACCACCACCACCACCACCGTCGCCCCCG
ATGAAGGCACGCCGGCCATCAACTCTTTTTTCCACCACGGCGGCGCATAT
TCCGAGGCCGACAGTAGCGGTGTCGGCGCGGGTTCGTCATCGTCGTCGCC
CTTGGCCGGGCCCCACGGCGGCAACGGCCAACACGGTGCT back to top
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