mRNA_E-fasciculatus_F_contig15037.3570.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15037.3570.1
Unique NamemRNA_E-fasciculatus_F_contig15037.3570.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15037.3570.1 vs. uniprot
Match: A0A6H5JKF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF0_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.140e-21
Identity = 54/68 (79.41%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 MRYAVVTEDGRRLGEDEREGVEPEQEGDXXXXXXXXASVVREFLAGRVGDAMLRMANQSIFADMLEAR 204
            MRY+VVTEDGRRLG DEREG EP  EG      XX  SV+REFLAGRVGDAMLRMANQSIFADMLEAR
Sbjct:  131 MRYSVVTEDGRRLGGDEREGAEPGLEG--GGRGXXGGSVLREFLAGRVGDAMLRMANQSIFADMLEAR 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15037.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JKF0_9PHAE6.140e-2179.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15037contigE-fasciculatus_F_contig15037:125..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.983642-CDS-E-fasciculatus_F_contig15037:124..3371622927983.983642-CDS-E-fasciculatus_F_contig15037:124..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15037 125..337 +
1695995778.0192149-CDS-E-fasciculatus_F_contig15037:124..3371695995778.0192149-CDS-E-fasciculatus_F_contig15037:124..337Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15037 125..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15037.3570.1prot_E-fasciculatus_F_contig15037.3570.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15037 125..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15037.3570.1

>prot_E-fasciculatus_F_contig15037.3570.1 ID=prot_E-fasciculatus_F_contig15037.3570.1|Name=mRNA_E-fasciculatus_F_contig15037.3570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=71bp
MRYAVVTEDGRRLGEDEREGVEPEQEGDGGGGGGGGASVVREFLAGRVGD
AMLRMANQSIFADMLEARLL*
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mRNA from alignment at E-fasciculatus_F_contig15037:125..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15037.3570.1 ID=mRNA_E-fasciculatus_F_contig15037.3570.1|Name=mRNA_E-fasciculatus_F_contig15037.3570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=213bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15037:125..337+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGTACGCCGTTGTGACGGAGGACGGTCGGCGTCTCGGCGAGGATGA
GCGGGAGGGAGTGGAACCGGAGCAAGAGGGGGATGGCGGCGGTGGCGGTG
GTGGTGGCGCGAGCGTTGTGCGAGAGTTCCTTGCCGGGCGAGTCGGCGAT
GCCATGCTCCGCATGGCCAACCAGAGCATCTTCGCCGACATGCTCGAGGC
ACGTTTGTTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15037:125..337+

>mRNA_E-fasciculatus_F_contig15037.3570.1 ID=mRNA_E-fasciculatus_F_contig15037.3570.1|Name=mRNA_E-fasciculatus_F_contig15037.3570.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=426bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15037:125..337+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGTACGCCGTTGTGACGGAGGACGGTCGGCGTCTCGGCGAGGATGA
GCGGGAGGGAGTGGAACCGGAGCAAGAGGGGGATGGCGGCGGTGGCGGTG
GTGGTGGCGCGAGCGTTGTGCGAGAGTTCCTTGCCGGGCGAGTCGGCGAT
GCCATGCTCCGCATGGCCAACCAGAGCATCTTCGCCGACATGCTCGAGGC
ACGTTTGTTGTGAATGAGGTACGCCGTTGTGACGGAGGACGGTCGGCGTC
TCGGCGAGGATGAGCGGGAGGGAGTGGAACCGGAGCAAGAGGGGGATGGC
GGCGGTGGCGGTGGTGGTGGCGCGAGCGTTGTGCGAGAGTTCCTTGCCGG
GCGAGTCGGCGATGCCATGCTCCGCATGGCCAACCAGAGCATCTTCGCCG
ACATGCTCGAGGCACGTTTGTTGTGA
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