mRNA_E-fasciculatus_F_contig15032.3568.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15032.3568.1
Unique NamemRNA_E-fasciculatus_F_contig15032.3568.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A6H5JHB7_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB7_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 3.330e-50
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +QVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV
Sbjct:   10 NQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 97
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A6V1NX56_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NX56_HETAK)

HSP 1 Score: 142 bits (357), Expect = 1.510e-40
Identity = 70/98 (71.43%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQVIPPPRAARQQ 294
            +QVRLTNVAVVRL + GKRFEIACY+NKVVNWRN+VETD+DEVLQI+SVF+NVSKGVLAK KDL KAFGT      CR+ILDKG++QV    R   Q+
Sbjct:   10 NQVRLTNVAVVRLQRAGKRFEIACYKNKVVNWRNKVETDIDEVLQIDSVFQNVSKGVLAKAKDLEKAFGTTETEACCRVILDKGQLQVSDREREVHQE 107
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A835Z759_9STRA (SBDS protein C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z759_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.060e-37
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 1 
Query:    4 QVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQVIPPPRAARQQEA 300
            QVRLTNVAVVR+ +TGKRFEIACYRNKVVNWRNRVETDL+EVLQI +VF+NVSKGVLA  KD+ KAFGT+++ E  R ILDKGE+QV    R A+ + A
Sbjct:   11 QVRLTNVAVVRVTRTGKRFEIACYRNKVVNWRNRVETDLNEVLQITTVFQNVSKGVLANKKDMAKAFGTEDEDEIIRYILDKGEVQVSDKERRAQYESA 109
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: V5H0P4_ANOGL (Ribosome maturation protein SBDS (Fragment) n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5H0P4_ANOGL)

HSP 1 Score: 135 bits (340), Expect = 1.730e-37
Identity = 63/88 (71.59%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +Q+RLTNVA+VR+ KTGKRFEIACYRNKVV+WRN+VE D+DEVLQ  +VF NVSKG +AK +DL+KAFGTDNQ E C+ IL KGE+Q+
Sbjct:    7 NQIRLTNVAIVRIKKTGKRFEIACYRNKVVSWRNQVEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKAFGTDNQTEICKQILAKGELQI 94
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A0T6BF36_9SCAR (SBDS domain-containing protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6BF36_9SCAR)

HSP 1 Score: 129 bits (325), Expect = 4.750e-37
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +Q+RLTNVAVVR  K GKRFEIACYRNKVV+WRN VE D+DEVLQ  +VF NVSKG +AK +DL+KAFGT++Q E C+ IL KGE+QV
Sbjct:    9 NQIRLTNVAVVRTKKAGKRFEIACYRNKVVSWRNEVEKDIDEVLQTHTVFTNVSKGQVAKKEDLIKAFGTEDQTEICKEILKKGELQV 96
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: UPI000180C90C (ribosome maturation protein SBDS-like n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C90C)

HSP 1 Score: 134 bits (336), Expect = 6.900e-37
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQVIPPPRA 282
            +QVRLTNVA+VR+ KTGKRFEIACY+NKV++WRN  E D+DEVLQ  +VF NVSKG  AKN+DL+KAFGTDNQ E C+ IL KGE+QV    R+
Sbjct:    8 NQVRLTNVAIVRIKKTGKRFEIACYKNKVMSWRNNTEKDIDEVLQTHTVFVNVSKGQTAKNQDLIKAFGTDNQTEVCKQILAKGELQVSEKERS 101
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A5E4QIS8_9NEOP (Ribosome maturation protein SBDS n=3 Tax=Pieridae TaxID=7114 RepID=A0A5E4QIS8_9NEOP)

HSP 1 Score: 134 bits (336), Expect = 7.080e-37
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +Q+RLTNVA+VRL K GKRFEIACYRNKV++WRN+VETD+DEVLQ  +VF NVSKG +AK +DL+K FG DNQ E C+ IL+KGE+QV
Sbjct:    9 NQIRLTNVAIVRLKKGGKRFEIACYRNKVISWRNKVETDIDEVLQTHTVFTNVSKGQVAKKEDLIKVFGRDNQTEICKEILEKGELQV 96
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: J3JYJ0_DENPD (Ribosome maturation protein SBDS n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JYJ0_DENPD)

HSP 1 Score: 134 bits (336), Expect = 7.640e-37
Identity = 61/99 (61.62%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQVIPPPRAARQQE 297
            +Q+RLTN+A+VR+ K GKRFEIACYRNKVV+WRN VE ++DEVLQ  SVF NVSKG +AK +DL+KAFG DNQ E C++IL+KGE+Q+    R ++ ++
Sbjct:    9 NQIRLTNIAIVRMKKAGKRFEIACYRNKVVSWRNNVEKNIDEVLQTHSVFTNVSKGQVAKKEDLLKAFGMDNQTEICKLILEKGELQISDKERQSQNEQ 107
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A0C9Q0K3_9HYME (Ribosome maturation protein SBDS n=2 Tax=Opiinae TaxID=68883 RepID=A0A0C9Q0K3_9HYME)

HSP 1 Score: 133 bits (335), Expect = 1.030e-36
Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +Q+RLTNVAVVR+ K GKRFEIACYRNKVV+WRN++E D+DEVLQ  +VF NVSKG ++K +DL+KAFGTDNQ E C+ IL KGE+QV
Sbjct:    9 NQIRLTNVAVVRMKKQGKRFEIACYRNKVVSWRNKLEKDIDEVLQTHTVFTNVSKGQMSKKEDLLKAFGTDNQTEICKEILSKGELQV 96
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BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Match: A0A834J129_RHYFE (Ribosome maturation protein SBDS n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834J129_RHYFE)

HSP 1 Score: 132 bits (333), Expect = 1.330e-36
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQV 264
            +Q+RLTNVAVVR+ K GKRFEIACYRNKVV+WRN+VE D+DEVLQ  +VF NVSKG +AK +DL+KAF TDNQ E C+ IL KGE+QV
Sbjct:    9 NQIRLTNVAVVRIKKAGKRFEIACYRNKVVSWRNQVEKDIDEVLQTHTVFANVSKGQVAKKEDLIKAFNTDNQTEICKQILSKGELQV 96
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15032.3568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHB7_9PHAE3.330e-5098.86C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6V1NX56_HETAK1.510e-4071.43Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835Z759_9STRA1.060e-3771.72SBDS protein C-terminal domain-containing protein ... [more]
V5H0P4_ANOGL1.730e-3771.59Ribosome maturation protein SBDS (Fragment) n=2 Ta... [more]
A0A0T6BF36_9SCAR4.750e-3770.45SBDS domain-containing protein n=1 Tax=Oryctes bor... [more]
UPI000180C90C6.900e-3768.09ribosome maturation protein SBDS-like n=1 Tax=Cion... [more]
A0A5E4QIS8_9NEOP7.080e-3770.45Ribosome maturation protein SBDS n=3 Tax=Pieridae ... [more]
J3JYJ0_DENPD7.640e-3761.62Ribosome maturation protein SBDS n=1 Tax=Dendrocto... [more]
A0A0C9Q0K3_9HYME1.030e-3670.45Ribosome maturation protein SBDS n=2 Tax=Opiinae T... [more]
A0A834J129_RHYFE1.330e-3671.59Ribosome maturation protein SBDS n=1 Tax=Rhynchoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15032contigE-fasciculatus_F_contig15032:2296..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.8e-41
Seed eggNOG ortholog2880.D8LRJ8
Preferred nameSBDS
KEGG koko:K10737,ko:K14574
KEGG Pathwayko03008,map03008
GOsGO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0001503,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010467,GO:0015630,GO:0015631,GO:0016043,GO:0016070,GO:0016072,GO:0016477,GO:0019843,GO:0019899,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030282,GO:0030595,GO:0030684,GO:0030687,GO:0031214,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0040007,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042330,GO:0043009,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0048513,GO:0048534,GO:0048539,GO:0048589,GO:0048731,GO:0048856,GO:0048870,GO:0050896,GO:0050900,GO:0051020,GO:0051179,GO:0051674,GO:0051716,GO:0060326,GO:0060348,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1902850,GO:1903047,GO:1990904
EggNOG free text desc.mature ribosome assembly
EggNOG OGsCOG1500@1,KOG2917@2759
EC3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.884794-CDS-E-fasciculatus_F_contig15032:2295..24601622927983.884794-CDS-E-fasciculatus_F_contig15032:2295..2460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15032 2296..2460 +
1695995777.9812903-CDS-E-fasciculatus_F_contig15032:2295..24601695995777.9812903-CDS-E-fasciculatus_F_contig15032:2295..2460Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15032 2296..2460 +
1622927983.8978114-CDS-E-fasciculatus_F_contig15032:2687..28341622927983.8978114-CDS-E-fasciculatus_F_contig15032:2687..2834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15032 2688..2834 +
1695995777.9926982-CDS-E-fasciculatus_F_contig15032:2687..28341695995777.9926982-CDS-E-fasciculatus_F_contig15032:2687..2834Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15032 2688..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15032.3568.1prot_E-fasciculatus_F_contig15032.3568.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15032 2296..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15032.3568.1

>prot_E-fasciculatus_F_contig15032.3568.1 ID=prot_E-fasciculatus_F_contig15032.3568.1|Name=mRNA_E-fasciculatus_F_contig15032.3568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=104bp
SQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVF
ENVSKGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQVIPPPRAARQQEA
EEFR
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mRNA from alignment at E-fasciculatus_F_contig15032:2296..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15032.3568.1 ID=mRNA_E-fasciculatus_F_contig15032.3568.1|Name=mRNA_E-fasciculatus_F_contig15032.3568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15032:2296..2834+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGGTGAGGCTGACGAACGTCGCCGTCGTCCGCCTTAACAAGACGGG
CAAGCGCTTCGAGATCGCCTGCTACCGCAACAAGGTGGTGAACTGGCGCA
ACCGGGTGGAGACCGACCTTGACGAGGTCCTGCAGATCGAGAGCGTCTTC
GAGAATGTGTCCAAGGTGATGGTGGGCTCGGAGTTGTCCAGTGGTATGCA
TATACTAAAGTAGGGTGATGAGGGATCGTGATAGGAGATAGGATAGGAGT
GTTAGTGTTGGGTTGGCGACGAGAAAGGGGTACACCATAGTTACAGTAGT
GCGGTAGGTGCCCCTGTTGGACTTTCTTTCGTATGTGGTGAATCTACAAC
CAGTTGCTTTCTTGGCGCTCGAATGAATCAATCAACCAACAGGGTGTGCT
GGCGAAGAACAAAGACTTGATGAAAGCCTTCGGCACGGACAACCAGCTCG
AAGCGTGCCGGATTATTCTGGACAAGGGGGAGATGCAGGTGATACCACCA
CCACGAGCAGCAAGACAGCAAGAGGCAGAGGAATTCAGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15032:2296..2834+

>mRNA_E-fasciculatus_F_contig15032.3568.1 ID=mRNA_E-fasciculatus_F_contig15032.3568.1|Name=mRNA_E-fasciculatus_F_contig15032.3568.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15032:2296..2834+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGCAGGTGAGGCTGACGAACGTCGCCGTCGTCCGCCTTAACAAGACGGG
CAAGCGCTTCGAGATCGCCTGCTACCGCAACAAGGTGGTGAACTGGCGCA
ACCGGGTGGAGACCGACCTTGACGAGGTCCTGCAGATCGAGAGCGTCTTC
GAGAATGTGTCCAAGTCGCAGGTGAGGCTGACGAACGTCGCCGTCGTCCG
CCTTAACAAGACGGGCAAGCGCTTCGAGATCGCCTGCTACCGCAACAAGG
TGGTGAACTGGCGCAACCGGGTGGAGACCGACCTTGACGAGGTCCTGCAG
ATCGAGAGCGTCTTCGAGAATGTGTCCAAGGGTGTGCTGGCGAAGAACAA
AGACTTGATGAAAGCCTTCGGCACGGACAACCAGCTCGAAGCGTGCCGGA
TTATTCTGGACAAGGGGGAGATGCAGGTGATACCACCACCACGAGCAGCA
AGACAGCAAGAGGCAGAGGAATTCAGAGGTGTGCTGGCGAAGAACAAAGA
CTTGATGAAAGCCTTCGGCACGGACAACCAGCTCGAAGCGTGCCGGATTA
TTCTGGACAAGGGGGAGATGCAGGTGATACCACCACCACGAGCAGCAAGA
CAGCAAGAGGCAGAGGAATTCAGA
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