mRNA_E-fasciculatus_F_contig15030.3567.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15030.3567.1
Unique NamemRNA_E-fasciculatus_F_contig15030.3567.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: D7FUT0_ECTSI (Methionine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT0_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 5.240e-26
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            ++ +VGEEEFKRHARIVKAHGAAVVVMAFDE+GQAADC+NKVRICKRSYDMLVDEVG
Sbjct:  420 ISLKVGEEEFKRHARIVKAHGAAVVVMAFDEEGQAADCDNKVRICKRSYDMLVDEVG 476
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A6H5JUD9_9PHAE (Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUD9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.580e-25
Identity = 49/57 (85.96%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            ++ +VGEEEFKRHARIVKAHG+AVVVMAFDE+GQAADC+NKVRICKRSYD+LVDEVG
Sbjct:  513 ISLKVGEEEFKRHARIVKAHGSAVVVMAFDEEGQAADCDNKVRICKRSYDILVDEVG 569
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A097PA47_9STRA (Methionine synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A097PA47_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.860e-21
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            ++ +VGEEEFKR A +VKAHGAAVVVMAFDE+GQAAD  NKVRICKRSYD+LVDEVG
Sbjct:  480 ISLKVGEEEFKRQAAVVKAHGAAVVVMAFDEEGQAADEYNKVRICKRSYDILVDEVG 536
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A7R9WJW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJW8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            ++ +VGEE FK  A ++K HGAAVVVMAFDE GQAAD ++KVRICKRSYDMLVDEVG
Sbjct:  153 ISLKVGEELFKEQATLLKKHGAAVVVMAFDEKGQAADEDDKVRICKRSYDMLVDEVG 209
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A225UAL6_9STRA (Methionine synthase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UAL6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.280e-18
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            ++ +VG+E F  HARIVK HGAAVVVMAFDE+GQAA    KVRICKRSYD+LVDEVG
Sbjct:  179 ISLKVGKELFMEHARIVKRHGAAVVVMAFDEEGQAATEAEKVRICKRSYDILVDEVG 235
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: U5KLF9_9TRYP (Methionine synthase n=3 Tax=Angomonas TaxID=1003337 RepID=U5KLF9_9TRYP)

HSP 1 Score: 85.9 bits (211), Expect = 3.660e-18
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVD 168
            ++ +VGEEEF R A +++ +GAAVVVMAFDEDGQAADCENK+RICKR+YD+LV+
Sbjct:  461 ISLKVGEEEFLRQAALIRRYGAAVVVMAFDEDGQAADCENKIRICKRAYDLLVE 514
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A7S1BX79_9STRA (Methionine synthase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BX79_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.000e-18
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEV 174
            ++ +VGEE FK HAR++K HGAAVVVMAFDE+GQAA+   KVRICKRSYD+LV+EV
Sbjct:  589 ISLKVGEELFKEHARLIKKHGAAVVVMAFDEEGQAAEMSEKVRICKRSYDILVNEV 644
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: E1ZUA0_CHLVA (Methionine synthase (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZUA0_CHLVA)

HSP 1 Score: 85.1 bits (209), Expect = 6.810e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   22 GEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            GE++F+  ARIVK HGAAVVVMAFDE+GQAADC NKVRIC+R+Y +LV+EVG
Sbjct:   13 GEDKFREQARIVKRHGAAVVVMAFDEEGQAADCANKVRICQRAYRILVEEVG 64
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: A0A0M9FPH4_9TRYP (Methionine synthase n=3 Tax=Leishmaniinae TaxID=1286322 RepID=A0A0M9FPH4_9TRYP)

HSP 1 Score: 85.1 bits (209), Expect = 6.830e-18
Identity = 38/53 (71.70%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    7 VNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLV 165
            ++ +VGE+EF R AR+++ +GAAVVVMAFDE+GQAADCENK+RICKR+YDMLV
Sbjct:  461 ISLKVGEKEFLRQARLIRRYGAAVVVMAFDENGQAADCENKIRICKRAYDMLV 513
[Close]
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Match: E1ZPJ8_CHLVA (Methionine synthase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPJ8_CHLVA)

HSP 1 Score: 85.1 bits (209), Expect = 6.830e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   22 GEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRSYDMLVDEVG 177
            GE++F+  ARIVK HGAAVVVMAFDE+GQAADC NKVRIC+R+Y +LV+EVG
Sbjct:  484 GEDKFREQARIVKRHGAAVVVMAFDEEGQAADCANKVRICQRAYRILVEEVG 535
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15030.3567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUT0_ECTSI5.240e-2689.47Methionine synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JUD9_9PHAE4.580e-2585.96Methionine synthase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A097PA47_9STRA3.860e-2180.70Methionine synthase n=3 Tax=Monodopsidaceae TaxID=... [more]
A0A7R9WJW8_9STRA1.830e-1873.68Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A225UAL6_9STRA3.280e-1873.68Methionine synthase (Fragment) n=1 Tax=Phytophthor... [more]
U5KLF9_9TRYP3.660e-1870.37Methionine synthase n=3 Tax=Angomonas TaxID=100333... [more]
A0A7S1BX79_9STRA5.000e-1871.43Methionine synthase n=2 Tax=Corethron hystrix TaxI... [more]
E1ZUA0_CHLVA6.810e-1875.00Methionine synthase (Fragment) n=1 Tax=Chlorella v... [more]
A0A0M9FPH4_9TRYP6.830e-1871.70Methionine synthase n=3 Tax=Leishmaniinae TaxID=12... [more]
E1ZPJ8_CHLVA6.830e-1875.00Methionine synthase n=1 Tax=Chlorella variabilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15030contigE-fasciculatus_F_contig15030:2907..3083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue7.7e-22
Seed eggNOG ortholog2880.D7FUT0
Preferred namemetH
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00548
KEGG ReactionR00946,R09365
KEGG Pathwayko00270,ko00450,ko00670,ko01100,ko01110,ko01230,map00270,map00450,map00670,map01100,map01110,map01230
KEGG ModuleM00017
EggNOG free text desc.betaine-homocysteine S-methyltransferase activity
EggNOG OGsCOG0646@1,KOG1579@2759
EC2.1.1.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927983.8514664-CDS-E-fasciculatus_F_contig15030:2906..30831622927983.8514664-CDS-E-fasciculatus_F_contig15030:2906..3083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15030 2907..3083 +
1695995777.9686022-CDS-E-fasciculatus_F_contig15030:2906..30831695995777.9686022-CDS-E-fasciculatus_F_contig15030:2906..3083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15030 2907..3083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15030.3567.1prot_E-fasciculatus_F_contig15030.3567.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15030 2907..3083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15030.3567.1

>prot_E-fasciculatus_F_contig15030.3567.1 ID=prot_E-fasciculatus_F_contig15030.3567.1|Name=mRNA_E-fasciculatus_F_contig15030.3567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=59bp
DDVNEQVGEEEFKRHARIVKAHGAAVVVMAFDEDGQAADCENKVRICKRS
YDMLVDEVG
back to top

mRNA from alignment at E-fasciculatus_F_contig15030:2907..3083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15030.3567.1 ID=mRNA_E-fasciculatus_F_contig15030.3567.1|Name=mRNA_E-fasciculatus_F_contig15030.3567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15030:2907..3083+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGACGTCAATGAACAGGTAGGCGAGGAGGAGTTCAAGCGCCACGCGAG
GATCGTCAAGGCGCACGGCGCGGCTGTGGTGGTGATGGCCTTCGACGAGG
ACGGCCAGGCCGCCGACTGCGAGAACAAAGTCCGCATCTGCAAGCGCTCC
TACGACATGCTCGTCGACGAGGTGGGT
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15030:2907..3083+

>mRNA_E-fasciculatus_F_contig15030.3567.1 ID=mRNA_E-fasciculatus_F_contig15030.3567.1|Name=mRNA_E-fasciculatus_F_contig15030.3567.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15030:2907..3083+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGACGTCAATGAACAGGTAGGCGAGGAGGAGTTCAAGCGCCACGCGAG
GATCGTCAAGGCGCACGGCGCGGCTGTGGTGGTGATGGCCTTCGACGAGG
ACGGCCAGGCCGCCGACTGCGAGAACAAAGTCCGCATCTGCAAGCGCTCC
TACGACATGCTCGTCGACGAGGTGGGTGATGACGTCAATGAACAGGTAGG
CGAGGAGGAGTTCAAGCGCCACGCGAGGATCGTCAAGGCGCACGGCGCGG
CTGTGGTGGTGATGGCCTTCGACGAGGACGGCCAGGCCGCCGACTGCGAG
AACAAAGTCCGCATCTGCAAGCGCTCCTACGACATGCTCGTCGACGAGGT
GGGT
back to top