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Homology
BLAST of mRNA_E-fasciculatus_F_contig1503.3566.1 vs. uniprot
Match: A0A6H5JXD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD5_9PHAE) HSP 1 Score: 606 bits (1563), Expect = 1.590e-214 Identity = 309/352 (87.78%), Postives = 323/352 (91.76%), Query Frame = 3
Query: 192 MMRPPLARRAAAGYVLSCGRRRRAPPS-PSSFTGQTP-----------TRGWSSSGFAAPGGDAGAAEMPGLPSAFPWREAPDNRGVRGLAERAMHSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLANGGGGEGKASSESGDRGKRRDGLPVWDIPEGALVDPRDVMHKDLAEFYLQAAVAAKVSRSTPFYRLHGFSSCEVSNVNVLWGAQRGDLPEEGETIEIWGSKYALKSLLQDIKAISSYRLSKDRAVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEVVQGSKAVAVRKHRLRLESSPFLKRDFQWSVVDLDNWMKGNTFW 1211
MMRPPLAR A AGY+LSC RR R PPS PSSFTG TP TRGWSSSGFA PGGDA AAE+PGLPSAFPWREAPDNRGVRGL ERAM+SVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLA+G G EGK+SSESGDRG+RRDGLPVWDIPEGALVDPRDVMHKDLA+FY+QAAVAAKVSRSTPFYRLHG SCE+SNVNVLWGAQRGDLPEEGETIEIWGSKY LKS+L+DIKAIS YR+SKDR VLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEE+VQGSKA AVRKHRLRLESSPFLKRDFQWSVVDLD+WMKGNTFW
Sbjct: 1 MMRPPLARSAGAGYLLSCRRRCRPPPSFPSSFTGGTPPEAAAKSNGVATRGWSSSGFATPGGDASAAEVPGLPSAFPWREAPDNRGVRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLADGEGDEGKSSSESGDRGRRRDGLPVWDIPEGALVDPRDVMHKDLADFYVQAAVAAKVSRSTPFYRLHGLRSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVSKDRDVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEIVQGSKAFAVRKHRLRLESSPFLKRDFQWSVVDLDDWMKGNTFW 352
BLAST of mRNA_E-fasciculatus_F_contig1503.3566.1 vs. uniprot
Match: D8LFT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT8_ECTSI) HSP 1 Score: 409 bits (1051), Expect = 4.560e-137 Identity = 238/398 (59.80%), Postives = 255/398 (64.07%), Query Frame = 3
Query: 51 LCVSLLCCALG*SGRPFGASHERTYRVRQPAAATEGVCAR*VCRCLVMMRPPLARRAAAGYVLSCGRRRRAPPSPSSFTGQTPTRGWSSSGFAAPGGDAGAAEMPGLPSAFPWREAPDNRGVRGLAERAMHSVMQHQHRRFLRAATKLDDADDDAFLRAAEMAFVQVAA--GVFQMPAHQVIAPLANGGGGEGKASSESGDRGKRR---------DGLPVWDIPEGALVDPRDVMHKDLAEFYLQAAVAAKVSRSTPFYRLHGFSSCEVSNVNVLWGAQRGDLPEEGETIEIWGSKYALKSLLQDIKAISSYRLSKDRAVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEVVQGSKAVAVRKHRLRLESSPFLKRDFQWSVVDLDNWMKGNTFW 1211
LCVSLLCCAL +R+PA RCL R A + V TRGWSSSGFA PGGDAGAAEMPGLPSAFPWREA DNRG+RGL ERAM+SVMQHQHRRFLRAATKLDDADDDAFL V+ G+ A P GG G R ++ DGLPVWDIPEGALVDPRDVMHKDLAEFY+QAAVAAKVSRSTPFYRLHGF+SCE+SNVNVLWGAQRGDLPEEGETIEIWGSKY LKS+L+DIKAIS YR++KDRA LDKPLSSIRKTTVQVDVDIGCTETFFVSD+RTEE VVDLDNWMKGNTFW
Sbjct: 19 LCVSLLCCAL----------------LRRPAL-----------RCLTRERTTCEAAAKSNGVT--------------------TRGWSSSGFATPGGDAGAAEMPGLPSAFPWREATDNRGMRGLVERAMYSVMQHQHRRFLRAATKLDDADDDAFLATCRRNGVRPGGRRGLPDASASGYRTPHQRGGRRRKGVFGIGGPREEKACVYPTLYPGDGLPVWDIPEGALVDPRDVMHKDLAEFYVQAAVAAKVSRSTPFYRLHGFTSCEISNVNVLWGAQRGDLPEEGETIEIWGSKYVLKSVLEDIKAISRYRVNKDRAGLDKPLSSIRKTTVQVDVDIGCTETFFVSDNRTEE------------------------------VVDLDNWMKGNTFW 339
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000970.1 |
| Exons | 7 |
| Model size | 1605 |
| Cds size | 1023 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1503.3566.1 >prot_E-fasciculatus_F_contig1503.3566.1 ID=prot_E-fasciculatus_F_contig1503.3566.1|Name=mRNA_E-fasciculatus_F_contig1503.3566.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=341bp
MMRPPLARRAAAGYVLSCGRRRRAPPSPSSFTGQTPTRGWSSSGFAAPGG
DAGAAEMPGLPSAFPWREAPDNRGVRGLAERAMHSVMQHQHRRFLRAATK
LDDADDDAFLRAAEMAFVQVAAGVFQMPAHQVIAPLANGGGGEGKASSES
GDRGKRRDGLPVWDIPEGALVDPRDVMHKDLAEFYLQAAVAAKVSRSTPF
YRLHGFSSCEVSNVNVLWGAQRGDLPEEGETIEIWGSKYALKSLLQDIKA
ISSYRLSKDRAVLDKPLSSIRKTTVQVDVDIGCTETFFVSDDRTEEVVQG
SKAVAVRKHRLRLESSPFLKRDFQWSVVDLDNWMKGNTFW* back to topmRNA from alignment at E-fasciculatus_F_contig1503:11488..16268- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig1503.3566.1 ID=mRNA_E-fasciculatus_F_contig1503.3566.1|Name=mRNA_E-fasciculatus_F_contig1503.3566.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4781bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1503:11488..16268- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGAACCCCTTTGACAAGACCAGCGACCCTACAATGCATGGCTGTGCTGG
CTGTGTGTGTCCCTGCTGTGTTGCGCGCTCGGCTAGAGCGGCCGGCCCTT
CGGTGCTTCACACGAAAGAACATATCGTGTGGTGAGTGGACAATGTCTAT
GCCGGGCACGAGCTCGAATCTACTATCATTGTTGCTTCATTGTATTGTTG
CCTCATGTCGAAAATCGCGTGCTGACTCCACTCAGCAACGAGCACTCCTG
GGTAACCCTGTACCATATGCATACAAGTTGGTGTTGCAAGTTGGGGTGCT
TGCTGCAAAGGGCTAACAACATGAAGCGAGCGATCTAATAACTTAGGGGA
CTTACACATACGGAGAAGAGACACTTACCTTCACTGAAAGAGCAAATGGA
AACGATGAACACGCACGCATTGACCCAAGACAGCAGTAGTAGTAGACTAT
CAGGTATGGATACCGGGAGTGCATTGAGTCGTGCTGGGCACTCAGCACCC
TTGGTAGCGACAATAGTCTCTGGAGCTGTTGCATGTTAACCGAACCTGCA
CTCTCAAAGACCGCATTGCCTCGGGGGGTTTTCGTCCATAGCGTAAAACA
TTAATGTGTCATGTAGCAATTTAGCATGTTTTCGAAATCACTGCTGTTGT
GCCGGCTACATGTATAGATAGGTAAATTTCCTGCATGCACCTCACGGTGC
TACTGCTGTGAAGTACACTGGTGAGGCAGGCAGAAAGATATCTGAAGATT
GCCTGGGATCAGGTGCTATCGATACAGCCGCTACAGCAGTAGGCCTTTGC
TCGGAAGGTGTCACTCAAAATTCTTTGCTGAGAGTTTGCGAGTAGGAATT
TGTATCATCAGTTGGTCCATGACGTGTTCGTACATGCGTAACATTGAAGC
CTCGTAGACTGCTGCAAACACATGAACACGGCCAAATGAGCTGCATACCG
AGAATCGATGTAGAACCCTCCCCACGCTCCCAAAGCAGAGACAACCTGCA
GCAGCAACGGAGGGGGTGTGCGCGCGATAGGTGTGTCGCTGTCTGGTCAT
GATGCGGCCACCTCTTGCGCGGAGAGCGGCGGCAGGGTACGTCCTCTCTT
GCGGGCGACGCCGCCGCGCCCCGCCGTCCCCCTCTTCATTCACTGGCCAG
ACGCCGACGAGGGGCTGGAGCTCGTCGGGGTTTGCTGCGCCGGGGGGCGA
CGCCGGTGCGGCCGAGATGCCGGGCCTGCCATCCGCGTTTCCGTGGAGAG
AAGCGCCGGACAATCGGGGCGTGAGGGGGCTCGCGGAGCGGGCGATGCAC
TCCGTGATGCAGCACCAGCACCGGAGATTCTTGCGCGCTGCTACCAAGCT
GGATGATGCCGATGACGACGCCTTTCTGGCGAGTGAGCATTTGTTGGAAG
CAAGTTTTTTGTGGTTTGGTCATTTGTTTTCGGCGTTTGAAGCGGCTGGT
CGGAAGGCGGCCGATCCGGTTGGCTGTGGCTGGATTGGTTCGCTGGTTGA
ACGACAACGGCAATGAATGGGATGTCGAAGGGTACGGCAGCAGTGTAGGG
CCGATGATTGGTCGACAGAGAAGCCTTGCCACTTTTGTCATTGGTCTGAA
TGGAAAAGAGTTAAAATCGATGGCAAAGACAGCGCAACAGGCACCAGTTG
GCCCGCTTCGTTTCCGTCGAGCGCTCACGAGCGCTCCTCCTGTCATCTAA
GACCCTACAGGTTTGATCGCTTCTTGACTCAATCCCTCCGGATCCACTGT
CTCTGTTTTTGATCTTGTCTTGACAACCCTATTGCTGTACCCTGTCTCCG
GCAACCTTTCGTCGGAGCAGCGTGCGGCAGAAATGGCGTTCGTGCAGGTG
GCCGCGGGCGTCTTCCAGATGCCGGCACATCAGGTCATCGCACCCCTCGC
CAACGGGGGGGGGGGTGAGGGGAAGGCGTCTTCGGAATCGGGCGACCGGG
GGAAGAGAAGTGAGTTCCCGGGGTGGGGTGTTCGGTTTTGCCTGTCTGCA
TTTTGTCACCAGCCCTTTGTTATAGCCAATACTTGAGTGTCTACCCAGCT
CATGATATTAGCAGAATTGGGGGAAGATATGTACCGGCAGTATGGCGGAG
GGAGAAGGCCATACGGACGCGTGCCCATGGGACTTGGGAAACGGATTTGA
GACAAGTAGGGCATCAAGGGGTGCCCTACCGTTGAAGAAGCGATGAGATA
TAATCGATGGGTGCGAAACTGTTCGTTGTTGAGAATTTGCGGTTAGAAGT
GGTGAGCAAACGATCGTCGAGGTGGACGAGCGGTTATGCTGACCTCGAAA
CGCCTGAGAATAAAAACGGAGAGTGATACTGCAAAGACGTATTGTAGAGA
GACGACACGTACTGGCAGGAGCTATGCTAGGGGTACGACACGACAAGTGT
TCTTCCTCGCATGACGTGCGTGATGCATGATGCATGATGCATGGCCACGC
GTTTACACTGACCGGTGTTGAGCTGGAAAAAGAAGGCGTGAGCGCTTCAC
ATTTATTTCATTAGCACTTCGAAGAACGTGACGTTGTCGACCGACTGCTT
CGCGGTTCGTATGCTGACGTTGGTTGCTCAGCCGTTGATTGAACGATACC
TCCGTGGGGACCTGCTGCTTACACCTGAGAAGAGTACATAAGTTCTCCGA
AGAGTCCAACGTGCGCTGTCACATGCACCGTTACTCGCTCTTGTCGGGGG
GCATGCGCGTATCCGACCAGGAGATGGGCTGCCGGTGTGGGATATTCCAG
AAGGGGCGTTGGTCGATCCGCGCGACGTCATGCACAAGGATCTCGCAGAG
TTTTACCTCCAGGCGGCCGTGGCGGCCAAGGTTTCTAGGAGCACGCCGTT
CTACCGGCTGCACGGCTTCAGCTCCTGCGAAGTTTCGAACGTGAACGTGC
TGTGGGTGAGAGGCACAAGGAGAGCAGGGTGAATTAGCCCCCAAACCCGT
CCTCGCGAGGACGCGTGGTCGATGATCTAACCACTATGGCATGCAAAACA
TATGAGTACGCCCCCCCCCTCGCGACCAACACTGCAGCGTAGCCTGGGGG
GTTTCTATTGTTTCCACTGGGAGGCCTCTTTCCCAACCAAAGGAAAGTGT
TAACACCTACACACCTACCCCCCATGGTATTTTTGTTCGGCCCCTTTCCG
AAACAAAGGAAAGTGTTAACACGTACCCCCCATGGTACTTTTGTTCGGGG
TGCAAACTTCTACCGGAATGACAGGGTGCTCAGCGAGGCGACCTGCCGGA
GGAAGGAGAGACGATCGAGATCTGGGGTTCCAAATACGCGCTGAAGTCGC
TTCTCCAGGATATCAAGGCGATATCCAGTTATCGCTTGAGCAAGGACCGG
GCCGTGCTCGACAAGCCCTTGTCCTCGATACGGAAGACCACGGTGCAGGT
GGACGTGGACATCGGCTGCACGGAGACATTCTTCGTCTCCGACGATCGGA
CGGAGGAGGTGTGTTGCTGTCGGCGATCAGTCCGCCCTCCTCGTGTTCTG
TCTCTCCTCCCTGGCGACCTTTGAGAAAGTTCTCACCGCGTGGTTCTGTC
CGTTGGTCTAGCTCGTTTTTTTTTAAAGAAAAATACAAATACATAGCTCA
TAGCTCGTTTTTGTTTTTTTTCTATTCGCCGGCGCTCACGGTGGCAGGCT
CGATGGCGTGAGGTTGAACCTTGAACCTCATCCCCAGCCTTCCGTCGGTG
CCAACCCCGTTGCTACTCTGTGTATTCATAGGTGGACACCTCTACCTACT
CCCTCCCTCCACTGCCCGGCATTTGTTAAGTCTTTCAGGCAATCACGTTC
CTTAGGCGCCTTTTTTTTGTCGTCACACTCGTCCCCTTTTCATCCAAAAA
CCTGCAGGTTGTACAAGGGAGTAAGGCCGTCGCCGTCCGCAAGCATCGGC
TCCGTCTAGAGTCGTCTCCATTCCTCAAGCGCGATTTCCAGTGGTCGGTG
AGAAACACACACGAGACAATCAAAGCCTAATTCTGCATGTGACGATGAAA
AATTGAGAACCGAGGTGTTTATGGCGGAGGTAGACGGTGTTTCGGCTACA
TAGCGTGTTGGCTGGTGTGATGGATTGACGCCTACCTTGTCTAGGTATTG
TTTGCTCTGCAGGCTGTCGGAGCTGCCGTCCCGGCTATTGAGGCGGGGAT
GCATGAACGTCCCACGTACCGTGATTGGTCTGCTCGTCACCTGACCTGGT
CGACGCCCCTTCCGGCCCACGCACGTGGCACATGTTTCATGTGCATCATT
GTTTGTTTATATTGTGGGTGTCCTGCCGATATAGTTTTATCGACGCGCAC
CCTCCCTTTCTCGCCCGTGTCGCTTGTTGTGTGGCATCAATACAGGTGGT
GGATTTAGACAACTGGATGAAGGGCAACACGTTCTGGTGATTGGCGGCTT
ACCGAACGACTGCGGCTCTTTGCTATACGCATGCTTGATTCAGCGGCACC
GAGGAAAGCGTCACCCTACTGTAGACTCTAGTTTATCGTTGGCGAATGTT
TTGGGATGGGTCGTATCCCAAGCTGTAGTTCACTGGCGACCGTTTTGTTT
CCTTTCGTGTTGCCGAGGGATGGACGATGCGATTATTGTTTGTGTAGTGG
AAGCAATCCCTTCTCTTTCGCTCCAAGTATGAAAGTGTCGCGTGGTGTTC
AGCTGTCCCGAATCTCTCTAAGATTCTTCACGCACTGCGGCGGCTCCTTC
CCTATCAGGATGACAAACGAACAGGGCGAAAACCTGCACCGAAATTCAGG
AAAGCGGCTTACCGCCCGTGGCCAAGGGGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig1503:11488..16268- >mRNA_E-fasciculatus_F_contig1503.3566.1 ID=mRNA_E-fasciculatus_F_contig1503.3566.1|Name=mRNA_E-fasciculatus_F_contig1503.3566.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1503:11488..16268- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGATGCGGCCACCTCTTGCGCGGAGAGCGGCGGCAGGGTACGTCCTCTC
TTGCGGGCGACGCCGCCGCGCCCCGCCGTCCCCCTCTTCATTCACTGGCC
AGACGCCGACGAGGGGCTGGAGCTCGTCGGGGTTTGCTGCGCCGGGGGGC
GACGCCGGTGCGGCCGAGATGCCGGGCCTGCCATCCGCGTTTCCGTGGAG
AGAAGCGCCGGACAATCGGGGCGTGAGGGGGCTCGCGGAGCGGGCGATGC
ACTCCGTGATGCAGCACCAGCACCGGAGATTCTTGCGCGCTGCTACCAAG
CTGGATGATGCCGATGACGACGCCTTTCTGATGATGCGGCCACCTCTTGC
GCGGAGAGCGGCGGCAGGGTACGTCCTCTCTTGCGGGCGACGCCGCCGCG
CCCCGCCGTCCCCCTCTTCATTCACTGGCCAGACGCCGACGAGGGGCTGG
AGCTCGTCGGGGTTTGCTGCGCCGGGGGGCGACGCCGGTGCGGCCGAGAT
GCCGGGCCTGCCATCCGCGTTTCCGTGGAGAGAAGCGCCGGACAATCGGG
GCGTGAGGGGGCTCGCGGAGCGGGCGATGCACTCCGTGATGCAGCACCAG
CACCGGAGATTCTTGCGCGCTGCTACCAAGCTGGATGATGCCGATGACGA
CGCCTTTCTGCGTGCGGCAGAAATGGCGTTCGTGCAGGTGGCCGCGGGCG
TCTTCCAGATGCCGGCACATCAGGTCATCGCACCCCTCGCCAACGGGGGG
GGGGGTGAGGGGAAGGCGTCTTCGGAATCGGGCGACCGGGGGAAGAGAAC
GTGCGGCAGAAATGGCGTTCGTGCAGGTGGCCGCGGGCGTCTTCCAGATG
CCGGCACATCAGGTCATCGCACCCCTCGCCAACGGGGGGGGGGGTGAGGG
GAAGGCGTCTTCGGAATCGGGCGACCGGGGGAAGAGAAGAGATGGGCTGC
CGGTGTGGGATATTCCAGAAGGGGCGTTGGTCGATCCGCGCGACGTCATG
CACAAGGATCTCGCAGAGTTTTACCTCCAGGCGGCCGTGGCGGCCAAGGT
TTCTAGGAGCACGCCGTTCTACCGGCTGCACGGCTTCAGCTCCTGCGAAG
TTTCGAACGTGAACGTGCTGTGGGAGATGGGCTGCCGGTGTGGGATATTC
CAGAAGGGGCGTTGGTCGATCCGCGCGACGTCATGCACAAGGATCTCGCA
GAGTTTTACCTCCAGGCGGCCGTGGCGGCCAAGGTTTCTAGGAGCACGCC
GTTCTACCGGCTGCACGGCTTCAGCTCCTGCGAAGTTTCGAACGTGAACG
TGCTGTGGGGTGCTCAGCGAGGCGACCTGCCGGAGGAAGGAGAGACGATC
GAGATCTGGGGTTCCAAATACGCGCTGAAGTCGCTTCTCCAGGATATCAA
GGCGATATCCAGTTATCGCTTGAGCAAGGACCGGGCCGTGCTCGACAAGC
CCTTGTCCTCGATACGGAAGACCACGGTGCAGGTGGACGTGGACATCGGC
TGCACGGAGACATTCTTCGTCTCCGACGATCGGACGGAGGAGGGTGCTCA
GCGAGGCGACCTGCCGGAGGAAGGAGAGACGATCGAGATCTGGGGTTCCA
AATACGCGCTGAAGTCGCTTCTCCAGGATATCAAGGCGATATCCAGTTAT
CGCTTGAGCAAGGACCGGGCCGTGCTCGACAAGCCCTTGTCCTCGATACG
GAAGACCACGGTGCAGGTGGACGTGGACATCGGCTGCACGGAGACATTCT
TCGTCTCCGACGATCGGACGGAGGAGGTTGTACAAGGGAGTAAGGCCGTC
GCCGTCCGCAAGCATCGGCTCCGTCTAGAGTCGTCTCCATTCCTCAAGCG
CGATTTCCAGTGGTCGGTTGTACAAGGGAGTAAGGCCGTCGCCGTCCGCA
AGCATCGGCTCCGTCTAGAGTCGTCTCCATTCCTCAAGCGCGATTTCCAG
TGGTCGGTGGTGGATTTAGACAACTGGATGAAGGGCAACACGTTCTGGTG
AGTGGTGGATTTAGACAACTGGATGAAGGGCAACACGTTCTGGTGA back to top
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