mRNA_E-fasciculatus_F_contig15022.3561.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15022.3561.1
Unique NamemRNA_E-fasciculatus_F_contig15022.3561.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig15022.3561.1 vs. uniprot
Match: D8LJW3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJW3_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.190e-46
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 3 
Query:  312 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAGLSTPKSKKSKNGKHSSTRKAER 569
            MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAGLSTPKSKK K GKH+ TRK ER
Sbjct:    1 MGYQLDLDRSCLITASDVDIPIDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAGLSTPKSKKGKKGKHAPTRKTER 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15022.3561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJW3_ECTSI5.190e-4694.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15022contigE-fasciculatus_F_contig15022:1300..2497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPHD-type zinc finger protein
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-01_009900.1
Exons2
Model size739
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15022.3561.1prot_E-fasciculatus_F_contig15022.3561.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15022 1374..2330 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.8993607-UTR-E-fasciculatus_F_contig15022:1299..13731622927982.8993607-UTR-E-fasciculatus_F_contig15022:1299..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15022 1300..1373 +
1695995777.6917286-UTR-E-fasciculatus_F_contig15022:1299..13731695995777.6917286-UTR-E-fasciculatus_F_contig15022:1299..1373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15022 1300..1373 +
1622927982.9403052-UTR-E-fasciculatus_F_contig15022:2330..24971622927982.9403052-UTR-E-fasciculatus_F_contig15022:2330..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15022 2331..2497 +
1695995777.7167869-UTR-E-fasciculatus_F_contig15022:2330..24971695995777.7167869-UTR-E-fasciculatus_F_contig15022:2330..2497Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig15022 2331..2497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927982.9122975-CDS-E-fasciculatus_F_contig15022:1373..18191622927982.9122975-CDS-E-fasciculatus_F_contig15022:1373..1819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15022 1374..1819 +
1695995777.7006161-CDS-E-fasciculatus_F_contig15022:1373..18191695995777.7006161-CDS-E-fasciculatus_F_contig15022:1373..1819Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15022 1374..1819 +
1622927982.925267-CDS-E-fasciculatus_F_contig15022:2278..23301622927982.925267-CDS-E-fasciculatus_F_contig15022:2278..2330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15022 2279..2330 +
1695995777.7087753-CDS-E-fasciculatus_F_contig15022:2278..23301695995777.7087753-CDS-E-fasciculatus_F_contig15022:2278..2330Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15022 2279..2330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15022.3561.1

>prot_E-fasciculatus_F_contig15022.3561.1 ID=prot_E-fasciculatus_F_contig15022.3561.1|Name=mRNA_E-fasciculatus_F_contig15022.3561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=166bp
MVDTTPQEPDKSAGDDQSSACEICGGKEEGGGSAAAPDTGSSSSTSAATT
TQQQQRQHRQEDSFALRCNCCRRWYHPWCMGYQLDLDRSCLITASDVDIP
IDSVTGLPVVCQWFCDSCSSTVTGVVAATAGRRQQRRLAVAAGLSTPKSK
KSKNGKHSSTRKAER*
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mRNA from alignment at E-fasciculatus_F_contig15022:1300..2497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15022.3561.1 ID=mRNA_E-fasciculatus_F_contig15022.3561.1|Name=mRNA_E-fasciculatus_F_contig15022.3561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15022:1300..2497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGACTGCAGCAGCAGCAGCGGTCTCTCTGCTCTGCCCAGTCGTACCTC
ACACCCCCACAACCGTCTCACCACATGGTAGACACGACGCCGCAGGAGCC
GGACAAGTCCGCGGGCGACGACCAGTCCTCCGCGTGTGAGATTTGTGGCG
GCAAGGAAGAAGGCGGCGGGTCTGCGGCCGCCCCCGACACCGGCAGCAGC
AGCAGTACGTCTGCTGCCACCACCACCCAGCAGCAGCAGCGCCAGCATCG
ACAGGAGGATTCGTTTGCCCTGCGGTGCAACTGCTGCAGGCGCTGGTACC
ACCCCTGGTGCATGGGCTACCAGCTGGACCTGGACCGCTCCTGCTTGATC
ACGGCGTCTGATGTGGATATCCCCATCGACTCGGTCACCGGCCTCCCCGT
GGTGTGCCAGTGGTTCTGCGACTCATGTTCCTCGACGGTCACCGGCGTGG
TAGCCGCGACGGCCGGCAGGCGGCAGCAGCGGAGGTTGGCCGTTGCTGCT
GGGTTGTCGACGCCAAAGAGGTAAGGGGTGCTGACCTGCTGTTACGGCAG
CAGCAGTGGCGTCTTGCGGAGTTTTGTAGCCTACCGGGATCTGTTATGGG
TGCCTGCCACCGCCTGTTTTGGATCGCCAACTTGGATTCGTTGCGCTGCG
AACAGCAACACTACATGTATGTACATGTATCCTGCTGTCGTCCATGCACT
TTGGATTGTGTCCTGCTACGGCGGTCGTTGCGTTTATTTTTTGTTGCCGT
GCGTGGTATTTTTGCTTCTATGGTGTTTAATCTGTTGATGTGATGAGGGG
AGACACGCGCACGTGGTTACTGCACCAGAGAGTAGTTTGAATCCGCTTGC
TTCATTTCCCAAGTGCCTGACATCCGCGGTCGTCGCACGCACGCAAGCTA
TTTAGTATTTTCACCCGCCGATCTCATCGCACCCATGGCTTTGCCTGCTT
TGTGTTCTGCTCATTCTACGTGCGTGCAGTAAGAAGAGTAAAAACGGGAA
ACACTCGTCCACACGGAAGGCAGAGCGATGACAACGGCTGGCGGAGAGCG
GGGGAGAGGCGACGTTTTGATTTTGTTCTCGAGTCGATGGATGGGGTAAC
ATGCGCCAGACTGGATTCATCCTTAGCCATGCATGGGCAAGCAACAGCAG
TCGTTTGCTTCGCAAACCAAAGGCCCGGAGGAAACACAAGGGGGGGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15022:1300..2497+

>mRNA_E-fasciculatus_F_contig15022.3561.1 ID=mRNA_E-fasciculatus_F_contig15022.3561.1|Name=mRNA_E-fasciculatus_F_contig15022.3561.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15022:1300..2497+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTAGACACGACGCCGCAGGAGCCGGACAAGTCCGCGGGCGACGACCA
GTCCTCCGCGTGTGAGATTTGTGGCGGCAAGGAAGAAGGCGGCGGGTCTG
CGGCCGCCCCCGACACCGGCAGCAGCAGCAGTACGTCTGCTGCCACCACC
ACCCAGCAGCAGCAGCGCCAGCATCGACAGGAGGATTCGTTTGCCCTGCG
GTGCAACTGCTGCAGGCGCTGGTACCACCCCTGGTGCATGGGCTACCAGC
TGGACCTGGACCGCTCCTGCTTGATCACGGCGTCTGATGTGGATATCCCC
ATCGACTCGGTCACCGGCCTCCCCGTGGTGTGCCAGTGGTTCTGCGACTC
ATGTTCCTCGACGGTCACCGGCGTGGTAGCCGCGACGGCCGGCAGGCGGC
AGCAGCGGAGGTTGGCCGTTGCTGCTGGGTTGTCGACGCCAAAGAGATGG
TAGACACGACGCCGCAGGAGCCGGACAAGTCCGCGGGCGACGACCAGTCC
TCCGCGTGTGAGATTTGTGGCGGCAAGGAAGAAGGCGGCGGGTCTGCGGC
CGCCCCCGACACCGGCAGCAGCAGCAGTACGTCTGCTGCCACCACCACCC
AGCAGCAGCAGCGCCAGCATCGACAGGAGGATTCGTTTGCCCTGCGGTGC
AACTGCTGCAGGCGCTGGTACCACCCCTGGTGCATGGGCTACCAGCTGGA
CCTGGACCGCTCCTGCTTGATCACGGCGTCTGATGTGGATATCCCCATCG
ACTCGGTCACCGGCCTCCCCGTGGTGTGCCAGTGGTTCTGCGACTCATGT
TCCTCGACGGTCACCGGCGTGGTAGCCGCGACGGCCGGCAGGCGGCAGCA
GCGGAGGTTGGCCGTTGCTGCTGGGTTGTCGACGCCAAAGAGTAAGAAGA
GTAAAAACGGGAAACACTCGTCCACACGGAAGGCAGAGCGATGATAAGAA
GAGTAAAAACGGGAAACACTCGTCCACACGGAAGGCAGAGCGATGA
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