mRNA_E-fasciculatus_F_contig1501.3556.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1501.3556.1
Unique NamemRNA_E-fasciculatus_F_contig1501.3556.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1501.3556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1501contigE-fasciculatus_F_contig1501:16605..17142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.9698646-CDS-E-fasciculatus_F_contig1501:16604..171411622927981.9698646-CDS-E-fasciculatus_F_contig1501:16604..17141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1501 16605..17141 +
1695995777.1382105-CDS-E-fasciculatus_F_contig1501:16604..171411695995777.1382105-CDS-E-fasciculatus_F_contig1501:16604..17141Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1501 16605..17141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1501.3556.1prot_E-fasciculatus_F_contig1501.3556.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1501 16605..17141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1501.3556.1

>prot_E-fasciculatus_F_contig1501.3556.1 ID=prot_E-fasciculatus_F_contig1501.3556.1|Name=mRNA_E-fasciculatus_F_contig1501.3556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp
SEYAGDLCSSRWLSPNCKSVHSERVQDVRIAEKASNKPTGTIAGHVIQAV
RLAENNVKAMRNQPPAKIWPRRIKNGSPKTSRSHAVAKSLSWNIFLYFVL
ALTYTYSPTTICYDDASTDIAKWRDRSKMDSEKYSSDTESKAHQYPYAQQ
NESRAPSRHNPVVAPNAKQQHFFRFSLPY
back to top

mRNA from alignment at E-fasciculatus_F_contig1501:16605..17142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1501.3556.1 ID=mRNA_E-fasciculatus_F_contig1501.3556.1|Name=mRNA_E-fasciculatus_F_contig1501.3556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=538bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1501:16605..17142+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGAATATGCTGGCGATCTTTGCAGTAGTCGCTGGTTGAGCCCGAACTG
CAAGAGTGTCCACTCCGAAAGGGTGCAAGATGTACGAATAGCGGAGAAAG
CTTCGAACAAACCAACAGGAACCATTGCGGGGCACGTGATACAAGCAGTT
CGTCTCGCGGAGAACAACGTGAAAGCGATGAGGAACCAACCACCCGCGAA
AATATGGCCTCGACGAATCAAAAACGGAAGTCCAAAAACTTCACGCAGCC
ACGCTGTTGCGAAATCCCTTTCGTGGAACATTTTTCTGTACTTCGTGTTG
GCGCTGACCTATACGTACTCACCCACAACAATATGTTATGACGATGCTTC
GACCGACATCGCAAAATGGCGCGACAGAAGCAAAATGGATTCAGAAAAGT
ACAGCAGTGACACTGAAAGTAAAGCGCACCAGTACCCTTATGCACAGCAG
AATGAATCGCGTGCGCCTTCACGGCACAACCCAGTTGTTGCACCCAACGC
TAAGCAACAACATTTCTTTCGCTTCTCCCTGCCTTACC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1501:16605..17142+

>mRNA_E-fasciculatus_F_contig1501.3556.1 ID=mRNA_E-fasciculatus_F_contig1501.3556.1|Name=mRNA_E-fasciculatus_F_contig1501.3556.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1501:16605..17142+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCTGAATATGCTGGCGATCTTTGCAGTAGTCGCTGGTTGAGCCCGAACTG
CAAGAGTGTCCACTCCGAAAGGGTGCAAGATGTACGAATAGCGGAGAAAG
CTTCGAACAAACCAACAGGAACCATTGCGGGGCACGTGATACAAGCAGTT
CGTCTCGCGGAGAACAACGTGAAAGCGATGAGGAACCAACCACCCGCGAA
AATATGGCCTCGACGAATCAAAAACGGAAGTCCAAAAACTTCACGCAGCC
ACGCTGTTGCGAAATCCCTTTCGTGGAACATTTTTCTGTACTTCGTGTTG
GCGCTGACCTATACGTACTCACCCACAACAATATGTTATGACGATGCTTC
GACCGACATCGCAAAATGGCGCGACAGAAGCAAAATGGATTCAGAAAAGT
ACAGCAGTGACACTGAAAGTAAAGCGCACCAGTACCCTTATGCACAGCAG
AATGAATCGCGTGCGCCTTCACGGCACAACCCAGTTGTTGCACCCAACGC
TAAGCAACAACATTTCTTTCGCTTCTCCCTGCCTTACTCTGAATATGCTG
GCGATCTTTGCAGTAGTCGCTGGTTGAGCCCGAACTGCAAGAGTGTCCAC
TCCGAAAGGGTGCAAGATGTACGAATAGCGGAGAAAGCTTCGAACAAACC
AACAGGAACCATTGCGGGGCACGTGATACAAGCAGTTCGTCTCGCGGAGA
ACAACGTGAAAGCGATGAGGAACCAACCACCCGCGAAAATATGGCCTCGA
CGAATCAAAAACGGAAGTCCAAAAACTTCACGCAGCCACGCTGTTGCGAA
ATCCCTTTCGTGGAACATTTTTCTGTACTTCGTGTTGGCGCTGACCTATA
CGTACTCACCCACAACAATATGTTATGACGATGCTTCGACCGACATCGCA
AAATGGCGCGACAGAAGCAAAATGGATTCAGAAAAGTACAGCAGTGACAC
TGAAAGTAAAGCGCACCAGTACCCTTATGCACAGCAGAATGAATCGCGTG
CGCCTTCACGGCACAACCCAGTTGTTGCACCCAACGCTAAGCAACAACAT
TTCTTTCGCTTCTCCCTGCCTTAC
back to top