mRNA_E-fasciculatus_F_contig15006.3552.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig15006.3552.1
Unique NamemRNA_E-fasciculatus_F_contig15006.3552.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 4.450e-137
Identity = 221/234 (94.44%), Postives = 224/234 (95.73%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVETKPCPAMSSLRPQEDIEQ 684
            RFEAVGAFIIA+MLMGAGYGIGNHSFETLREVI+ G HAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSM GAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK      QVPGV+SFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE KPCPAMSSLRPQEDIEQ
Sbjct:  286 RFEAVGAFIIALMLMGAGYGIGNHSFETLREVISRGEHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMSGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVEPKPCPAMSSLRPQEDIEQ 519          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK)

HSP 1 Score: 227 bits (579), Expect = 2.270e-68
Identity = 127/250 (50.80%), Postives = 174/250 (69.60%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVI--------------NGGAHAAI--PTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVETKPCPAMSSLRPQEDIEQ 684
            RFEAVGAFIIA+ML+ A YG+GNHS+E+  + I              +GG   +   PT++  VAA +SI++KE L+R T  +G+R NSQVLIANAWHHR+DA+SSV+A + I G+M G P+LD +AGLMVAGM++LTG+Q+  +++ QLTD A+ D   +      +V GV+ FD +RARRMG Q LVD+ IQ D  ISA+AA QI +R RW +L  +P V+DV+V ++ E KPCP +SSL  QE I++
Sbjct:  183 RFEAVGAFIIAMMLIAASYGLGNHSYESFLKAIGYMKIPALGIGGNLDGGVPTSELQPTKIALVAAVISIVSKELLYRVTAKVGERLNSQVLIANAWHHRSDALSSVIAFVGIGGAMMGVPVLDSLAGLMVAGMLSLTGLQLGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVSGEQKPCPVVSSLPTQEKIQE 432          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.810e-61
Identity = 118/240 (49.17%), Postives = 156/240 (65.00%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHA-----AIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDR--VRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVETKPCPAMSSLRPQEDIE 681
            RFEA+GA  IA +L    +G G H++ +L E     A       + PT L   AA VSI++KE L+RAT  +G+R NSQVLIANAWHHR+DA SSVVAL+ I G++ G P+LDP+AGL VAGMVA+TG+QV  D++ QLTD  D +  ++         GVVS D+  VRARRMG   LVDL +Q    + AS A QI + VRW IL  +P V++V+V++  + + CP M+ LRP E IE
Sbjct:   74 RFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIE 313          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA)

HSP 1 Score: 207 bits (528), Expect = 5.200e-60
Identity = 118/240 (49.17%), Postives = 156/240 (65.00%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHA-----AIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDR--VRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVETKPCPAMSSLRPQEDIE 681
            RFEA+GA  IA +L    +G G H++ +L E     A       + PT L   AA VSI++KE L+RAT  +G+R NSQVLIANAWHHR+DA SSVVAL+ I G++ G P+LDP+AGL VAGMVA+TG+QV  D++ QLTD  D +  ++         GVVS D+  VRARRMG   LVDL +Q    + AS A QI + VRW IL  +P V++V+V++  + + CP M+ LRP E IE
Sbjct:  235 RFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQVGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHVVSQPQSCPMMAQLRPAEAIE 474          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.540e-56
Identity = 119/278 (42.81%), Postives = 160/278 (57.55%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVIN----------------------GGAHAAI----------------------PTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE-TKPCPAMSSLRPQEDIE 681
            RFEAVGAF+I+VMLM AGY +GNH++E+    +                       G A A++                      P ++  VAA VSI++KE L+R T  +GK+ NSQVLIANAWHHR+DA+SS VA+  I G+  G P+LDP+AGLMV+ M+ LTG+Q   D++  LTD AD  +  K      QV GV    ++RAR MG  TLVD+ I T   ISASAA Q+ +R RW +L  +P V+DV+V +     K CP  ++LRP  +IE
Sbjct:   77 RFEAVGAFVISVMLMSAGYSLGNHAYESFLRALPYSGIPTSLAGWKVGLLSMMGHMGAASASVTGSAXXXXXXXXXXXVEGFAGMPGKIALVAALVSIVSKELLYRVTARVGKKLNSQVLIANAWHHRSDALSSFVAVGGIVGATMGLPVLDPLAGLMVSAMLTLTGLQCGWDSVKALTDTADTAMVSKLGALLDQVEGVQGHSQLRARSMGSDTLVDVKIHTHPRISASAAHQVAERARWHLLRNVPMVSDVLVTLDTSGDKICPVTATLRPHSEIE 354          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A7S3FI97_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FI97_9EUKA)

HSP 1 Score: 180 bits (456), Expect = 5.700e-52
Identity = 103/241 (42.74%), Postives = 156/241 (64.73%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPTRLTAV-AASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRK------QVPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNI--AVETKPCPAMSS----LRPQEDIEQ 684
            RFE++G+  I+ +L+GAG   G  S+  LR  +      A P    A+ AA  SI++KEAL+RAT A+G+++ SQ+LIANAWHHR+DA+SSVVAL+ IAGS+ G  +LDP+AG++VAG+V+  G+++  ++++QLTD +DYD+  +       VPGV   + +R R MG  +LVDL IQ D M+SAS A ++ + VRW +  +   V++V+V++        CP   S    LRP   +E+
Sbjct:   12 RFESLGSLAISTLLLGAGCSFGASSYAALRSPV------AAPLGSIALWAALASILSKEALYRATMAVGQQQRSQILIANAWHHRSDALSSVVALVGIAGSLLGCRILDPLAGIVVAGLVSWMGIRIGVESLSQLTDTSDYDMVERIGDIARGVPGVKGVNHIRCRSMGGSSLVDLAIQVDPMLSASCAHRLAEEVRWTVADKQEGVSEVLVHVDTTAHDVTCPLQDSIVQRLRPHTQVEE 246          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A2E7ZII0_9DELT (Cation transporter n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E7ZII0_9DELT)

HSP 1 Score: 176 bits (447), Expect = 5.150e-50
Identity = 102/236 (43.22%), Postives = 152/236 (64.41%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTD-AADYDV------RRKQVPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVETKPCPA-MSSLRPQEDIEQ 684
            RFE VG+FIIA+ML+  G G+  H+ E +   I       IP  L   AA +SI  KE L++ T  IGK++NS++LIANAWHHR+DA+SS+ AL+ I+ ++ G P+LDPIAG +VAG++  +GV +   ++ +LTD  A+ +V        + + GV  F +VRARRMGP  LVDL ++ + M+S SAA Q+ +RVRW IL  +P V +V++++  E       +  +RPQ ++EQ
Sbjct:   79 RFETVGSFIIALMLVATGVGVVWHTLERIENPI-------IPGELALWAAGISIAMKEFLYQLTYRIGKKQNSRILIANAWHHRSDAISSIAALIGISVALLGFPLLDPIAGFLVAGLIIKSGVDIGYSSIRELTDEVAEQEVIGTILKTLEGIEGVEHFHQVRARRMGPHLLVDLHLEVNCMMSVSAAHQVAERVRWHILETMPAVNEVLIHVDAEQDSEEGEIVLMRPQAEVEQ 307          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT)

HSP 1 Score: 176 bits (445), Expect = 9.740e-50
Identity = 97/217 (44.70%), Postives = 140/217 (64.52%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTD-AADYDVRRKQ------VPGVVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE 630
            +FE VG FIIA++L+  G G+  H F  +   +       +P  +    A ++II KEALF  T  +G+R  S+VL+ANAWHHR+DA+SSV ALL IAG+  G P++DPIAG++VAG++  TG+ +  +++ +LTD   + DV  +       + GV  +  +RARRMGP  LVDL IQ D M+S SAA Q+ +RVR EIL +LP V +V+V++  E
Sbjct:   79 KFETVGTFIIALLLLFTGIGVAGHVFNRMDAPV-------VPGTIALWMAGIAIIVKEALFHVTRMVGRRTGSRVLMANAWHHRSDAISSVAALLGIAGAQLGIPLMDPIAGMLVAGLIIKTGIDIGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVHVDAE 288          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: A0A329SCH1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCH1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.150e-48
Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPT---------------RLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTD---AADYDVRRKQVPG----VVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE 630
            ++EAVG+  +  +L+  G GIG   F+ ++E+ NG A  ++P                 L A AA +SI AKEALF AT  IGK+ NS+VLIANAWHHRTDA+SSVVAL  I GSM G P+LDP+AG+ VA M+  TG ++  D++ +LTD    A+     K+V      V+   +VRARRMGP TLVDL +  D   S S AQQI +RVR  IL E+P V++V+V+I V+
Sbjct:  151 KYEAVGSLSVGAILVLCGLGIGADGFQAMQEIWNGAAATSLPELNLPFLSEIDRSTQLALAAGAAGISIAAKEALFNATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIIGSMAGMPLLDPVAGMAVAAMIMKTGGEICLDSVQELTDNTVEAEVLETLKEVSASVDDVLHVSQVRARRMGPYTLVDLRVHLDARTSISMAQQISERVRSYILQEVPDVSEVLVHIDVQ 382          
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Match: W2ZQI2_PHYPR (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2ZQI2_PHYPR)

HSP 1 Score: 174 bits (442), Expect = 2.340e-48
Identity = 108/232 (46.55%), Postives = 146/232 (62.93%), Query Frame = 1
Query:    1 RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPT---------------RLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTD---AADYDVRRKQVPG----VVSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE 630
            ++EAVG+  +  +L+  G GIG   F+ L+E++NG    ++P                 L A AA VSI AKEAL+ AT  IGK+ NS+VLIANAWHHRTDA+SSVVAL  I GSM G P+LDP+AG+ VA M+  TG ++  D++ +LTD    A+     ++V G    V+   +VRARRMGP TLVDL +      S S AQQI +RVR  IL E+P V++V+V+I V+
Sbjct:  151 KYEAVGSLSVGAILVLCGLGIGADGFQALQEILNGAGATSLPEFNLPFLSEIDRSTQWALAAGAAGVSIGAKEALYHATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIVGSMAGVPLLDPVAGMAVAAMIVKTGGEICLDSVQELTDNTVEAEVLETLEEVSGSVDDVLHVSQVRARRMGPYTLVDLRVHLHARTSISMAQQISERVRSHILQEVPDVSEVLVHIDVQ 382          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig15006.3552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A9_ECTSI4.450e-13794.44Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
A0A7S4DFL3_HETAK2.270e-6850.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RL19_9STRA1.810e-6149.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RMB7_9STRA5.200e-6049.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V756_9STRA7.540e-5642.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3FI97_9EUKA5.700e-5242.74Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A2E7ZII0_9DELT5.150e-5043.22Cation transporter n=2 Tax=Proteobacteria TaxID=12... [more]
A0A3D5HED6_9DELT9.740e-5044.70Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3... [more]
A0A329SCH1_9STRA1.150e-4846.98Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2ZQI2_PHYPR2.340e-4846.55Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig15006contigE-fasciculatus_F_contig15006:21..2334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score406.4
Seed ortholog evalue9e-111
Seed eggNOG ortholog2880.D7G7A9
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons5
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig15006.3552.1prot_E-fasciculatus_F_contig15006.3552.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig15006 21..2334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.7281713-CDS-E-fasciculatus_F_contig15006:20..1521622927981.7281713-CDS-E-fasciculatus_F_contig15006:20..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 21..152 -
1695995777.0547214-CDS-E-fasciculatus_F_contig15006:20..1521695995777.0547214-CDS-E-fasciculatus_F_contig15006:20..152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 21..152 -
1622927981.738644-CDS-E-fasciculatus_F_contig15006:450..5671622927981.738644-CDS-E-fasciculatus_F_contig15006:450..567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 451..567 -
1695995777.065365-CDS-E-fasciculatus_F_contig15006:450..5671695995777.065365-CDS-E-fasciculatus_F_contig15006:450..567Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 451..567 -
1622927981.751768-CDS-E-fasciculatus_F_contig15006:1040..11001622927981.751768-CDS-E-fasciculatus_F_contig15006:1040..1100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 1041..1100 -
1695995777.0735772-CDS-E-fasciculatus_F_contig15006:1040..11001695995777.0735772-CDS-E-fasciculatus_F_contig15006:1040..1100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 1041..1100 -
1622927981.7634747-CDS-E-fasciculatus_F_contig15006:1420..16091622927981.7634747-CDS-E-fasciculatus_F_contig15006:1420..1609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 1421..1609 -
1695995777.0814748-CDS-E-fasciculatus_F_contig15006:1420..16091695995777.0814748-CDS-E-fasciculatus_F_contig15006:1420..1609Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 1421..1609 -
1622927981.7785802-CDS-E-fasciculatus_F_contig15006:2148..23341622927981.7785802-CDS-E-fasciculatus_F_contig15006:2148..2334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 2149..2334 -
1695995777.091768-CDS-E-fasciculatus_F_contig15006:2148..23341695995777.091768-CDS-E-fasciculatus_F_contig15006:2148..2334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig15006 2149..2334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig15006.3552.1

>prot_E-fasciculatus_F_contig15006.3552.1 ID=prot_E-fasciculatus_F_contig15006.3552.1|Name=mRNA_E-fasciculatus_F_contig15006.3552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
RFEAVGAFIIAVMLMGAGYGIGNHSFETLREVINGGAHAAIPTRLTAVAA
SVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGS
MCGAPMLDPIAGLMVAGMVALTGVQVSTDAMAQLTDAADYDVRRKQVPGV
VSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFV
ADVMVNIAVETKPCPAMSSLRPQEDIEQ
back to top

mRNA from alignment at E-fasciculatus_F_contig15006:21..2334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig15006.3552.1 ID=mRNA_E-fasciculatus_F_contig15006.3552.1|Name=mRNA_E-fasciculatus_F_contig15006.3552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15006:21..2334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTTGAAGCGGTGGGTGCGTTTATCATCGCAGTGATGCTCATGGGGGC AGGGTATGGCATCGGCAACCACTCGTTCGAGACGCTCAGGGAGGTCATCA ACGGAGGCGCGCACGCGGCGATACCGACGCGCTTGACGGCGGTGGCGGCT AGCGTCAGCATCATCGCCAAGGAGGCATTGTTCCGGGTAGGGGGTGTTTG CTCCTGTGGGTTGTTGTAGGTGTCGTAGTGGTCGTCGTCGTTGTTGCTGT TATTGTTGGTGGTGGTGGTGTTCGCTGTCGCCGCTGCTGCTGTTGGTGGT GGCGGTGTTGACATTGCTGATGGTGCTGCTACTGCTGTTGCTGTTGTTGT TGTTGTTGTTGTTGTTGTCACCGTCGTCGTCGTCGTCGTTGTTATTGTTG CCGTTTTCGTGGGCGCTATGAGTGCATCGAGAGGGTTGGTTGTGGTTTGG TGCTGGCTGTTACCCGTTGGAGGTGAACAATGCGGAAGGTGGAGGAACCC CGTCCAGGAAGTGGCCGATGCACGAAGGCGCTATCGAAGGGTAGTGATAG TGTAAAGCCCATGTGAAATGTGCCACCGTCCATGTACATGTTGCGCGCGT TCGAGACGACGATGGTCGTAGATGGCATGGCCGTGAGCGCTGCCTTATCC TGCCGATCAATACCACCCACCCACGCCACGCATACCCTAACGAGCCAAAT CTCCCTGCGCCCCCCTCCTCCTCAGGCGACCAACGCCATAGGCAAGAGGC GGAATTCCCAGGTGCTGATCGCGAACGCGTGGCACCACCGCACCGACGCC GTGTCCTCGGTGGTCGCTCTGCTCGCCATCGCGGGCTCCATGTGCGGCGC TCCGATGCTGGACCCGATTGCCGGGCTCATGGTGGCGGGGATGGTGGCCC TGACCGGGGTTCAGGTGTGTTGTGCGCGGCTTTGGGGCCGTTTGATGGAG ATGTGTGTCCGCTTGCCGCCTGGGATGTTATTTTTCGGGGGTGTATTGTA TGCTTTGTTTTGCGTGTTTCGGATGTGGAAGGCACGCAAGCAATTGAACG TCCCCGTCGCCTGAAGGGCGTAGACCCTGAGCACGGCGCTCGAAATCGAT CAGCATTTTGCTCCACGCGTCGTTTGCGAAACTCGGTTGATTTGGGCTAT ATGTTTTTTTATTTTTTTTCTTGGATACATGCGCAACCCGACTGTTGTTT TCTCATTCCTGTCGTTGTGTCTGTTTATTCCCAGGTATCGACGGACGCCA TGGCGCAGCTAACAGATGCCGCTGACTATGACGTCCGCCGCAAGGTTGCG GAGATAGCCACGCAGGCAAGCCAAAAAAAAACTACTTATTAAATCGTTTG CTACGGGAAGCAAGCGCAGTTCTTAACTTCTATTTGGCCATGGCCTGTCT GGCGGATGAATCGATCGCGTCGCGTGCGACGCCTCACGCACCGCTCATGA TACAGTGAGAGCGGGGGGCACGCAAACGTGCAGTTTTGCATTACGGATGT TGTATTTCATGTACAAGATGTTACGGCCCTTTGCACGTGCTTGATGGAGC AAATCCTTACTGCCGCTGTCAATGACGACGACTGTGCACCTATCACTATC CACTGCTCTTGCGCGCCTATCCCTCTCGAGAGCTTGTTACGTCACGCTTG CCTCTATCGACAATCCTGGTCGCGTTGCTTACTCGTGAATTCGTCGAATT CCCTCTCTGACGTCAATCAACCCGTGCTGCGATTGATTTCATTTTGTACA ACCGCCCGCGCGGAGAGCAGGTGCCCGGGGTGGTGTCCTTCGACCGCGTG CGAGCACGAAGGATGGGTCCGCAGACCCTGGTAGACCTCACCATACAGAC GGACGACATGATCTCAGCCTCGGCGGCACAGCAGGTGATTGGTTGGTTGG TTGGTGAGGTGGGGGGTCGGCGGGGCCCCCTCGGATACATATTATGGTGC GCACAGACTTACATGATTTATGGAGAGATTCATTTTGGCGTTCGCATTCA GACGATTTTTTTTTAATTTTGGCCCCCCTTCAAGGGACCTTGGTTTTACG TACCCGCTGGCACCACGACGTTTTGTTTTTGCTCAGGCGATCAGCGCGGT CGATGATAGTATCAAAGACATGTGTCGGCATACTCTAGTGTCTAAGGGAC CCCCTCCCCGCTCTCTCTCCGAAACAATGCAGATTGGCCAGCGAGTGAGG TGGGAGATTTTGGGAGAGCTCCCCTTCGTGGCGGACGTGATGGTCAACAT CGCAGTCGAGACTAAGCCCTGCCCGGCGATGAGCAGCCTTCGACCGCAGG AGGACATCGAGCAG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig15006:21..2334-

>mRNA_E-fasciculatus_F_contig15006.3552.1 ID=mRNA_E-fasciculatus_F_contig15006.3552.1|Name=mRNA_E-fasciculatus_F_contig15006.3552.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig15006:21..2334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGTTTGAAGCGGTGGGTGCGTTTATCATCGCAGTGATGCTCATGGGGGC
AGGGTATGGCATCGGCAACCACTCGTTCGAGACGCTCAGGGAGGTCATCA
ACGGAGGCGCGCACGCGGCGATACCGACGCGCTTGACGGCGGTGGCGGCT
AGCGTCAGCATCATCGCCAAGGAGGCATTGTTCCGGAGGTTTGAAGCGGT
GGGTGCGTTTATCATCGCAGTGATGCTCATGGGGGCAGGGTATGGCATCG
GCAACCACTCGTTCGAGACGCTCAGGGAGGTCATCAACGGAGGCGCGCAC
GCGGCGATACCGACGCGCTTGACGGCGGTGGCGGCTAGCGTCAGCATCAT
CGCCAAGGAGGCATTGTTCCGGGCGACCAACGCCATAGGCAAGAGGCGGA
ATTCCCAGGTGCTGATCGCGAACGCGTGGCACCACCGCACCGACGCCGTG
TCCTCGGTGGTCGCTCTGCTCGCCATCGCGGGCTCCATGTGCGGCGCTCC
GATGCTGGACCCGATTGCCGGGCTCATGGTGGCGGGGATGGTGGCCCTGA
CCGGGGTTCAGGCGACCAACGCCATAGGCAAGAGGCGGAATTCCCAGGTG
CTGATCGCGAACGCGTGGCACCACCGCACCGACGCCGTGTCCTCGGTGGT
CGCTCTGCTCGCCATCGCGGGCTCCATGTGCGGCGCTCCGATGCTGGACC
CGATTGCCGGGCTCATGGTGGCGGGGATGGTGGCCCTGACCGGGGTTCAG
GTATCGACGGACGCCATGGCGCAGCTAACAGATGCCGCTGACTATGACGT
CCGCCGCAAGGTATCGACGGACGCCATGGCGCAGCTAACAGATGCCGCTG
ACTATGACGTCCGCCGCAAGCAGGTGCCCGGGGTGGTGTCCTTCGACCGC
GTGCGAGCACGAAGGATGGGTCCGCAGACCCTGGTAGACCTCACCATACA
GACGGACGACATGATCTCAGCCTCGGCGGCACAGCAGCAGGTGCCCGGGG
TGGTGTCCTTCGACCGCGTGCGAGCACGAAGGATGGGTCCGCAGACCCTG
GTAGACCTCACCATACAGACGGACGACATGATCTCAGCCTCGGCGGCACA
GCAGATTGGCCAGCGAGTGAGGTGGGAGATTTTGGGAGAGCTCCCCTTCG
TGGCGGACGTGATGGTCAACATCGCAGTCGAGACTAAGCCCTGCCCGGCG
ATGAGCAGCCTTCGACCGCAGGAGGACATCGAGCAGATTGGCCAGCGAGT
GAGGTGGGAGATTTTGGGAGAGCTCCCCTTCGTGGCGGACGTGATGGTCA
ACATCGCAGTCGAGACTAAGCCCTGCCCGGCGATGAGCAGCCTTCGACCG
CAGGAGGACATCGAGCAG
back to top