mRNA_E-fasciculatus_F_contig1500.3548.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1500.3548.1
Unique NamemRNA_E-fasciculatus_F_contig1500.3548.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A6H5KGD8_9PHAE (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGD8_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 4.580e-121
Identity = 170/176 (96.59%), Postives = 174/176 (98.86%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDLVEESA 528
            VTAIEKMGGPTIKWRSGRKDD+VAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCH DASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSG+LMMLPSDIVLLEDKSFKKYVDMYA +DKLFFEDFSKAF+TLLELGTKDLVEESA
Sbjct:  188 VTAIEKMGGPTIKWRSGRKDDDVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCHIDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGTLMMLPSDIVLLEDKSFKKYVDMYAENDKLFFEDFSKAFSTLLELGTKDLVEESA 363
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A7S1XLM4_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLM4_9STRA)

HSP 1 Score: 223 bits (568), Expect = 1.760e-69
Identity = 110/175 (62.86%), Postives = 128/175 (73.14%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMATAKGLR-DVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDLVEE 522
            V A++  GGP I W+SGR D     + P GRLPAADKG+P ATA GLR DVFYRMGFND++IVALSGAHALGRCH DASGYDGPWTPTP     A YF LL ++PW+ +K   PFQY+DPSG LMMLPSDIV+ +D  F KY  MYA D KL+ +DF+ AF  LLELG   L  +
Sbjct:  169 VVAVKACGGPVIPWKSGRVDAAEETMAPDGRLPAADKGSPEATAAGLRGDVFYRMGFNDKDIVALSGAHALGRCHPDASGYDGPWTPTPTTLNNA-YFSLLLNVPWTPKKWDGPFQYEDPSGKLMMLPSDIVVRDDPKFAKYAKMYAKDGKLWEKDFTAAFNKLLELGCSGLTAQ 342
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A7S4D4K7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K7_HETAK)

HSP 1 Score: 217 bits (553), Expect = 2.460e-69
Identity = 112/175 (64.00%), Postives = 130/175 (74.29%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMAT----AKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDL 513
            V +I+ MGGPTI+W +GR D  VAAV P GRLP AD G P  T    A+ LRDVFYRMGFND+EIVALSGAHALGRCHT ASGYDGPWTPTP  F  A YF LLK++ W++R    PFQY+D   +LMMLP+D+VLL+DK F KYVD+YA D + F  DF+ AF  LLELGT  L
Sbjct:    9 VASIKAMGGPTIQWCAGRTDQPVAAVTPDGRLPNADVG-PAGTDPSDAQHLRDVFYRMGFNDQEIVALSGAHALGRCHTTASGYDGPWTPTPTTFNNA-YFTLLKNLDWTKRDWSGPFQYEDGGKTLMMLPTDLVLLKDKKFLKYVDLYAKDARQFDRDFAAAFHKLLELGTSGL 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A6S9FM04_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FM04_HETAK)

HSP 1 Score: 217 bits (553), Expect = 3.820e-67
Identity = 112/175 (64.00%), Postives = 130/175 (74.29%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMAT----AKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDL 513
            V +I+ MGGPTI+W +GR D  VAAV P GRLP AD G P  T    A+ LRDVFYRMGFND+EIVALSGAHALGRCHT ASGYDGPWTPTP  F  A YF LLK++ W++R    PFQY+D   +LMMLP+D+VLL+DK F KYVD+YA D + F  DF+ AF  LLELGT  L
Sbjct:  173 VASIKAMGGPTIQWCAGRTDQPVAAVTPDGRLPNADVG-PAGTDPSDAQHLRDVFYRMGFNDQEIVALSGAHALGRCHTTASGYDGPWTPTPTTFNNA-YFTLLKNLDWTKRDWSGPFQYEDGGKTLMMLPTDLVLLKDKKFLKYVDLYAKDARQFDRDFAAAFHKLLELGTSGL 345
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A6T7BWD3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7BWD3_9EUKA)

HSP 1 Score: 211 bits (536), Expect = 4.140e-66
Identity = 106/173 (61.27%), Postives = 131/173 (75.72%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVA-AVPPGGRLPAADKGNPMATAKGLR-DVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDL 513
            VTA+E   G  + WR+GR D++   AV P GRLPAADKG+P AT K LR DVFYRMGF+DREIVALSGAHALGRCH DASGY GPWTPTP + T + Y+ LL ++PW+ ++   P Q++DPSG LMMLPSDI L++DK F+ YV  Y+ D +LFF+DF+  F  L ELGTK+L
Sbjct:   58 VTALE-ASGLKVSWRAGRVDEKSPDAVTPDGRLPAADKGSPDATLKALRMDVFYRMGFDDREIVALSGAHALGRCHPDASGYSGPWTPTPTILTNS-YYSLLLNLPWTLKEWDGPMQFEDPSGKLMMLPSDIALIQDKKFRPYVKEYSKDQQLFFKDFAATFQKLEELGTKNL 228
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A8J5XDX5_DIALT (PEROXIDASE_4 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDX5_DIALT)

HSP 1 Score: 214 bits (545), Expect = 6.140e-66
Identity = 107/175 (61.14%), Postives = 125/175 (71.43%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDLVEES 525
            V +I +MGGP + W+SGR D + A V P GRLPAADKG P ATA  LR  F RMGFND+EIVALSGAHALGRCH DASGY GPWTPTP L T A Y+ LL +  W+ +K   P QY++ SG LMMLPSD+ L++D  F KYV +YA D K F+ DFS AFA LLELG + L   S
Sbjct:  176 VVSIVQMGGPAVPWKSGRVDGKPAQVTPDGRLPAADKGAPKATAAALRQTFGRMGFNDQEIVALSGAHALGRCHPDASGYAGPWTPTPTLLTTA-YYSLLLNEKWTPKKWDGPLQYEERSGKLMMLPSDLTLVQDARFAKYVRLYAKDSKRFYADFSAAFAKLLELGAEGLTPTS 349
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A836CLD9_9STRA (Cytochrome C peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD9_9STRA)

HSP 1 Score: 213 bits (541), Expect = 9.040e-66
Identity = 105/168 (62.50%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGT 504
            V AI  M GP I WR+GR D + + V PG RLP ADKG+PM TA GLR  F RMGFND+EIVALSGAHALGRCH + SGY+GPWTPTP  F    YFKLLK++ W+ +      Q+++  G LMMLPSDIVLL+DK FKK+VD+YA+ ++ FFEDFSKAF+ L ELGT
Sbjct:  143 VQAIYAMAGPQIPWRAGRVDADESTVTPGDRLPDADKGDPMRTAAGLRATFNRMGFNDQEIVALSGAHALGRCHRNNSGYEGPWTPTPTNFNNL-YFKLLKNVNWTPKNWDGKPQFENEDGRLMMLPSDIVLLQDKEFKKWVDVYASSERKFFEDFSKAFSKLEELGT 309
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A7S0MUT7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MUT7_9CRYP)

HSP 1 Score: 213 bits (543), Expect = 1.340e-65
Identity = 106/170 (62.35%), Postives = 124/170 (72.94%), Query Frame = 1 
Query:    7 AIEKMGGPTIKWRSGRKDD-EVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDL 513
            A+E +GGP + WRSGRKD  + A V P GRLP ADKG P  TA  LRD+F RMGF D+EIVAL+GAHALGRCH DASGY GPWTPTP  F    Y+ LL ++ W        FQY+DPSG LMMLPSD+VL+ED+ FK+YV  YAAD+KLFF+DF+ AF  L ELGT  L
Sbjct:  184 AVETLGGPKVPWRSGRKDSRDPADVTPDGRLPDADKGEPGKTAAHLRDIFGRMGFGDQEIVALAGAHALGRCHADASGYVGPWTPTPTTFNNL-YYTLLLNLKWEPNTVNGKFQYKDPSGKLMMLPSDLVLIEDEGFKQYVAKYAADEKLFFKDFAAAFQKLEELGTSGL 352
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A0A7S1BRL8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRL8_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.440e-65
Identity = 109/169 (64.50%), Postives = 123/169 (72.78%), Query Frame = 1 
Query:   19 MGGPTIKWRSGRKDD-EVAAVPPGGRLPAADKGNPMAT---AKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELGTKDL 513
            MGGPTI W SGR D  + +AV P GRLP AD G   A    A  LRD+FYRMGF+DREIVALSGAHALGRCH  ASG+DGPWT TP  F    YF LLKSIPW ER+   PFQY+D SG LMML +D+VL++DKSFKKYVD YA DD +F +DF+ AF  L ELGT  L
Sbjct:    1 MGGPTIGWSSGRTDAMDPSAVTPDGRLPNADVGKAGAEPSDAGHLRDIFYRMGFDDREIVALSGAHALGRCHPTASGFDGPWTFTPTTFNNQ-YFVLLKSIPWKEREWSGPFQYEDSSGKLMMLATDLVLIQDKSFKKYVDKYAKDDSMFQKDFAAAFQKLEELGTSGL 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Match: A4S2G5_OSTLU (L-ascorbate peroxidase (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2G5_OSTLU)

HSP 1 Score: 207 bits (528), Expect = 9.250e-65
Identity = 107/170 (62.94%), Postives = 125/170 (73.53%), Query Frame = 1 
Query:    1 VTAIEKMGGPTIKWRSGRKDD-EVAAVPPGGRLPAADKGNPMA--TAKGLRDVFYRMGFNDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWSERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDFSKAFATLLELG 501
            V AIE+MGGP +K+  GR D+ +  AV P GRLP ADKG+     T +GLRDVFYRMGF+DREIVALSGAHALGRCH DASGY GPW+ TP LF  + YF LLK + W    +   FQY+DPSG+LMMLPSDI L+ED  FKKYVD+YA   K+FFEDF+ AF  L  LG
Sbjct:   75 VVAIEEMGGPKLKFSYGRVDEMDPEAVTPDGRLPDADKGDGPGPKTRQGLRDVFYRMGFDDREIVALSGAHALGRCHADASGYVGPWSGTPLLFNNS-YFVLLKGLKWEPNPDAKKFQYKDPSGNLMMLPSDIALIEDADFKKYVDVYAKSQKVFFEDFAAAFEKLETLG 243
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1500.3548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGD8_9PHAE4.580e-12196.59PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
A0A7S1XLM4_9STRA1.760e-6962.86Hypothetical protein n=4 Tax=Phaeomonas parva TaxI... [more]
A0A7S4D4K7_HETAK2.460e-6964.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9FM04_HETAK3.820e-6764.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6T7BWD3_9EUKA4.140e-6661.27Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8J5XDX5_DIALT6.140e-6661.14PEROXIDASE_4 domain-containing protein n=1 Tax=Dia... [more]
A0A836CLD9_9STRA9.040e-6662.50Cytochrome C peroxidase n=1 Tax=Tribonema minus Ta... [more]
A0A7S0MUT7_9CRYP1.340e-6562.35Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S1BRL8_9STRA1.440e-6564.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A4S2G5_OSTLU9.250e-6562.94L-ascorbate peroxidase (Fragment) n=1 Tax=Ostreoco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1500contigE-fasciculatus_F_contig1500:1..2516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.7
Seed ortholog evalue2.4e-92
Seed eggNOG ortholog2880.D8LTK5
Preferred nameCCP1
KEGG koko:K00428
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070013,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.cytochrome-c peroxidase activity
EggNOG OGs2QR1E@2759,COG0685@1
EC1.11.1.5
COG Functional cat.E
BiGG ReactioniMM904.YKR066C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionperoxidase
Ec32 orthologEc-28_003740.1
Exons5
Model size531
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1500.3548.1prot_E-fasciculatus_F_contig1500.3548.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1500 19..2516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.1694849-UTR-E-fasciculatus_F_contig1500:0..181622927981.1694849-UTR-E-fasciculatus_F_contig1500:0..18Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1500 1..18 +
1695995776.752717-UTR-E-fasciculatus_F_contig1500:0..181695995776.752717-UTR-E-fasciculatus_F_contig1500:0..18Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1500 1..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927981.1942816-CDS-E-fasciculatus_F_contig1500:18..381622927981.1942816-CDS-E-fasciculatus_F_contig1500:18..38Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 19..38 +
1695995776.7741687-CDS-E-fasciculatus_F_contig1500:18..381695995776.7741687-CDS-E-fasciculatus_F_contig1500:18..38Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 19..38 +
1622927981.2102923-CDS-E-fasciculatus_F_contig1500:362..5391622927981.2102923-CDS-E-fasciculatus_F_contig1500:362..539Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 363..539 +
1695995776.7899745-CDS-E-fasciculatus_F_contig1500:362..5391695995776.7899745-CDS-E-fasciculatus_F_contig1500:362..539Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 363..539 +
1622927981.22379-CDS-E-fasciculatus_F_contig1500:1075..11871622927981.22379-CDS-E-fasciculatus_F_contig1500:1075..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 1076..1187 +
1695995776.8012247-CDS-E-fasciculatus_F_contig1500:1075..11871695995776.8012247-CDS-E-fasciculatus_F_contig1500:1075..1187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 1076..1187 +
1622927981.2346823-CDS-E-fasciculatus_F_contig1500:1857..19491622927981.2346823-CDS-E-fasciculatus_F_contig1500:1857..1949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 1858..1949 +
1695995776.8097484-CDS-E-fasciculatus_F_contig1500:1857..19491695995776.8097484-CDS-E-fasciculatus_F_contig1500:1857..1949Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 1858..1949 +
1622927981.248702-CDS-E-fasciculatus_F_contig1500:2404..25161622927981.248702-CDS-E-fasciculatus_F_contig1500:2404..2516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 2405..2516 +
1695995776.8184447-CDS-E-fasciculatus_F_contig1500:2404..25161695995776.8184447-CDS-E-fasciculatus_F_contig1500:2404..2516Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1500 2405..2516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1500.3548.1

>prot_E-fasciculatus_F_contig1500.3548.1 ID=prot_E-fasciculatus_F_contig1500.3548.1|Name=mRNA_E-fasciculatus_F_contig1500.3548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
MGGPTIKWRSGRKDDEVAAVPPGGRLPAADKGNPMATAKGLRDVFYRMGF
NDREIVALSGAHALGRCHTDASGYDGPWTPTPNLFTGATYFKLLKSIPWS
ERKNFTPFQYQDPSGSLMMLPSDIVLLEDKSFKKYVDMYAADDKLFFEDF
SKAFATLLELGTKDLVEESA*
back to top

mRNA from alignment at E-fasciculatus_F_contig1500:1..2516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1500.3548.1 ID=mRNA_E-fasciculatus_F_contig1500.3548.1|Name=mRNA_E-fasciculatus_F_contig1500.3548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1500:1..2516+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTACCGCGATCGAGAAGATGGGTGGCCCCACCATCAAGTGAGATTTCAA
GTGCACGAAACATATACTGTATCCGCAAAAAAAATAGTTGTTGGGTGTGT
GGTTTTACCCTGCACCTATTACTGTTGTGTACCTTTACCTCCCAGGTTCA
TCTCTGTTTCCTTTTTCCGGGGAATGGCTGCCCTAAGGTTTTTCCAGTTG
GAAGCTCCAAACGCGTTGTAGCTTCCATTTTACAACAACTTGTCTCCCCT
TTTCAGGCATGAAATCGCATGGCATGAGTCCCATCTGGTCTCCCTCCCTC
TGCCTCTCTTTCTCTCTCTCTCCCTCTTGCTTCGGTGGCGGTTACGGCGA
TGCCAAACAAAGGTGGAGGTCAGGCCGCAAGGACGATGAGGTAGCAGCTG
TGCCTCCCGGAGGACGCCTCCCGGCCGCAGACAAGGGAAACCCCATGGCC
ACCGCTAAGGGGCTAAGGGACGTGTTCTACCGCATGGGCTTCAACGACAG
GGAGATCGTGGCCTTGTCCGGCGCGCACGCCCTCGGAAGGTATGGGAACC
TACCTCATTGTTCATTATCTTCTCTCTTGTCCTGTTGTTGGTGGTGCTTT
TTTGGTGGTAACATGGTTCACCCCCCGGAGAGTTACGTTTCGTTCTAATC
CATGTGGTTCATGGCGGGACGTGGTGAGTGCACCGCGCTCTGGGTGATCT
TCACCTTTACCTTTGTGGTGACACTGAGTGGCGGGATGCAATGGATGCAA
TGGATCAATGGCGGTGTTGGCGTTGGTTCTGGCTCCTATCGTATATCGTA
TCATATGCATACCCCACAAAGAGCAGCGCGCTGCTGCATTGCTATCGCTG
TCACGACTACGTGAAATGTCGCTTGTTCTATAGATATATACACAAGCCAG
CCGAGGGGAATCGCCAACTACCCAAATGTACGCCTGAGATATCTATTTGA
CCTTGGTCTAGTCTAGCGTGGTGTTTGTATCAGTTAAAAGCTTATGGTTT
GTCATTACCCTCCTTGTCTCGGGTTTAAGCTCCGTCCCGCCTGGCGTCAC
ACACGGCACTGGACACTGGATGCAGGTGCCACACTGACGCCTCCGGCTAC
GACGGTCCGTGGACGCCCACCCCCAACCTCTTCACCGGAGCTACCTACTT
CAAGCTTCTCAAGTCCATCCCGTGGTCTGAACGCAAGGTAAATGCATCGG
CATCGAAGTATTCTGTCACAATCTAATCAACCTGCATGCAAATGGTTGAT
GAGCGTTTCGTATTTTGTTTTCGTTTCTTTGTCTCTCGGTGGGGCGGGAT
TGTCGAGCGGACTCCTTGAAGTCAACGAGATGGTGGGAGGGCTAACCCCC
AAAGCGAATAAAGTTTGGCCACACGCTTGTGTTGCCCACTAGAAACAGCA
GTCGCCAGAATCGCGAGGAGGAAGAGGCGCATCTCTTGCACCAGGGGCGG
GGACGGCGACCCTGTAGTCTGCAGCTGACACATACCCGAAAAGCTACAAG
GCCAGTTTTGCATCGTCCATATAGATCGAGTGCACGGCGCAGTCGATGCA
TGGGACAAGACAGGAGTTGTGTTCTTGAGGTTTAAAAAAAGTACTGTATG
ATGCCTAACGTTGCTCTTTTCAATTCGCTCGAACAGTCACGTCTTGTGCC
AGCCACCGCGCTGATAATTATCGCTGGTTGTCCACAGGAGCTACTTGTAA
AAGTGTATTGCGATGCATGGCACGGCTGTTGTCGCTACCGCGTAACCTTT
TGCCCTCCGGACGCATCTGCTGTTGCTGCGGTGCGCTACTGGTGTACCTC
CTCTGATGCCGCTGCTCGAACCTCTCTCCCGAATGCACCTACTGTTCTGT
ACCCTAGAACTTCACGCCTTTCCAGTACCAAGACCCCAGCGGCAGCCTCA
TGATGCTCCCGAGCGACATCGTCCTTCTGGAAGACAAGAGCTTCAAGAAG
TGAGTGTACCGCTGGGTGGATGTTGCCGACCATCTAGTGTCAGGCCGTGA
GCCACATTACAGCATAGGGCCAAGACAAATCCTGTCATGTATTAAGGTAG
TAGGCTGCCTTGCTGCTGTTGCAAGTGGGACGCGAAACTTACGAAGAGAG
GATACTTTGTGTTGCCTCGCCCCCTATGCTTTGTGTTGCGCTTTTTTTAG
TGTATTTCGCTCTCGATTGCACCGAGAGTTGAAAGTGGGCGTCACGCATG
TAAGGATTTGCTGCACTCCGCAGGGACTGACTCCACTTGAAAGGAACAGA
ACCTCAGCAGGGAGGGTAAGCAACTGCAAAAGTTGTATTGGTTGGGCCAT
TTTTAGTGCTCGTGGCGAAACTATTCATCGTTCAATCCAAAACTTACTGT
GACGTGCCTGCATTTTGCTCTTGGGTGTGAATGGTTGCGAAACTTTTCTT
CCAGATACGTGGACATGTACGCGGCAGACGACAAGCTGTTCTTCGAGGAC
TTCTCCAAGGCCTTCGCCACCTTGCTCGAGCTCGGCACCAAGGATCTCGT
CGAGGAAAGCGCCTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1500:1..2516+

>mRNA_E-fasciculatus_F_contig1500.3548.1 ID=mRNA_E-fasciculatus_F_contig1500.3548.1|Name=mRNA_E-fasciculatus_F_contig1500.3548.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1500:1..2516+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTGGCCCCACCATCAAATGGGTGGCCCCACCATCAAGTGGAGGTCA
GGCCGCAAGGACGATGAGGTAGCAGCTGTGCCTCCCGGAGGACGCCTCCC
GGCCGCAGACAAGGGAAACCCCATGGCCACCGCTAAGGGGCTAAGGGACG
TGTTCTACCGCATGGGCTTCAACGACAGGGAGATCGTGGCCTTGTCCGGC
GCGCACGCCCTCGGAAGGTGGAGGTCAGGCCGCAAGGACGATGAGGTAGC
AGCTGTGCCTCCCGGAGGACGCCTCCCGGCCGCAGACAAGGGAAACCCCA
TGGCCACCGCTAAGGGGCTAAGGGACGTGTTCTACCGCATGGGCTTCAAC
GACAGGGAGATCGTGGCCTTGTCCGGCGCGCACGCCCTCGGAAGGTGCCA
CACTGACGCCTCCGGCTACGACGGTCCGTGGACGCCCACCCCCAACCTCT
TCACCGGAGCTACCTACTTCAAGCTTCTCAAGTCCATCCCGTGGTCTGAA
CGCAAGGTGCCACACTGACGCCTCCGGCTACGACGGTCCGTGGACGCCCA
CCCCCAACCTCTTCACCGGAGCTACCTACTTCAAGCTTCTCAAGTCCATC
CCGTGGTCTGAACGCAAGAACTTCACGCCTTTCCAGTACCAAGACCCCAG
CGGCAGCCTCATGATGCTCCCGAGCGACATCGTCCTTCTGGAAGACAAGA
GCTTCAAGAAAACTTCACGCCTTTCCAGTACCAAGACCCCAGCGGCAGCC
TCATGATGCTCCCGAGCGACATCGTCCTTCTGGAAGACAAGAGCTTCAAG
AAATACGTGGACATGTACGCGGCAGACGACAAGCTGTTCTTCGAGGACTT
CTCCAAGGCCTTCGCCACCTTGCTCGAGCTCGGCACCAAGGATCTCGTCG
AGGAAAGCGCCTGAATACGTGGACATGTACGCGGCAGACGACAAGCTGTT
CTTCGAGGACTTCTCCAAGGCCTTCGCCACCTTGCTCGAGCTCGGCACCA
AGGATCTCGTCGAGGAAAGCGCCTGA
back to top