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Homology
BLAST of mRNA_E-fasciculatus_F_contig150.3546.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE) HSP 1 Score: 470 bits (1209), Expect = 5.940e-158 Identity = 262/340 (77.06%), Postives = 281/340 (82.65%), Query Frame = 1
Query: 1 QLTVGAAARGSSRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNNSPEHNFPCVLSQEQATLVLRRRLADALYPRHSSASGAGCDHHETLRQRHSDDGDGGAKEQEEANLLMTTKKACYGPPRLFDSEWRFPETAVEKKSMAVFEDLWAKGLCAASGSNYAADFVVYNGPPTECHSVAAVMISRGASDELSPAEVSGFARVQQAVGKRAVIATAPLATNDTSPVVVGGSTLASATXXXXXVVASRDGERGPTGVEGRATAPRRHAVGKEATLGTVSATALEEPPTPAPXXXXXXXXXXXXXXXXXX------ANDGVRYITLQFHSVSSRV 1002
+LT GAAARGS RRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARN SPEH+FPCVLS EQATLVLRRRLAD YPRHSSAS GC HETL +RHSDDGDGGA+EQE+AN+ MTTKK C+ PPR DS+WRFPETAV KS AVFEDLWAKGLC ASGSNYAADFVVYNGPPTE HS+AAV++SRGA+DELSPAE+SGFARVQQAVGKRAVIATAPLATNDTSP+VV +TLASA VVA R E PTGVEGR + PRRH G+E GTV TA E+ PT AP XXXXXXXXXXX AN+GVRYITLQFHSVSSRV
Sbjct: 5 RLTAGAAARGSGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASETGCHGHETLEERHSDDGDGGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSRV 344
BLAST of mRNA_E-fasciculatus_F_contig150.3546.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 1.220e-20 Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query: 4 LTVGAAARGSSRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 150
LT GAAARGS RRP+VHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR
Sbjct: 2 LTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | tRNA endonuclease-like domain |
| Ec32 ortholog | Ec-27_003060.1 |
| Exons | 4 |
| Model size | 2223 |
| Cds size | 645 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig150.3546.1 >prot_E-fasciculatus_F_contig150.3546.1 ID=prot_E-fasciculatus_F_contig150.3546.1|Name=mRNA_E-fasciculatus_F_contig150.3546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp
MTTKKACYGPPRLFDSEWRFPETAVEKKSMAVFEDLWAKGLCAASGSNYA ADFVVYNGPPTECHSVAAVMISRGASDELSPAEVSGFARVQQAVGKRAVI ATAPLATNDTSPVVVGGSTLASATAAAAAVVASRDGERGPTGVEGRATAP RRHAVGKEATLGTVSATALEEPPTPAPAAVDAAAAAEAAAAAAAAANDGV RYITLQFHSVSSRV* back to topmRNA from alignment at E-fasciculatus_F_contig150:24239..29135- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig150.3546.1 ID=mRNA_E-fasciculatus_F_contig150.3546.1|Name=mRNA_E-fasciculatus_F_contig150.3546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4897bp|location=Sequence derived from alignment at E-fasciculatus_F_contig150:24239..29135- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CAGCTGACAGTGGGAGCGGCGGCTCGAGGGAGCAGCCGCCGCCCCCAAGT
GCACGTCGTGGACGGGAGGGTCTTGGTGTACGACCCGGCGAGCGCGGCCA
CCCTCCTGTCCGAGCATCGCATCTGGGCAACTCCTGTCGGCGTCAGGTAT
GTGTGGCGTCGTCTGGCGCGGTGCGATCCTTGATTCAGCCCGGTGTGGCG
TGGGGTGGTCGGGTGATTCACAAAAGCACAATACCTGAAGGCTCTCGCTG
CGGGACGACCATCATATGTTGTCGTGCCACGTATGATCCGTGCCATGCTT
CTGTCGATGCCAGACGTGTGATTTGATGCGATGCCACGTGACGTGATGTG
CTATACCGGGGGAGGGGCGTGGGGCGTGGAGGGCGGAGCAAGGTGGCAGG
AGCTGTGGAGTGCAGAGTCCCTGCATGCTAGGCACCCAGCCTAATAGACT
AGACTTGACTCAAAAGTAGCTGTTAATTCAATACGTTACGGCACATATCG
ATGCCGAGTAGCAGCCAGTCCGCCTGCTGCAAATTTTTTTTTCAGGTTGG
GGAAATTACTCCAATCAAACAAGAGACTGCTGAGACAAAAAACTGTCATT
TTTTAACCGAAAAGCTGCTTGCCGCCTTGCAGCGTTTTCGCATGCCCTCT
TACACCCCGCTGTTACGTTGCCTTCCCGAATCCCCATCTCCCTCCCCACC
ACCTACAACACCAAACACTCGCCTCCGTAAACGAAAACAAATTTACAGGC
GCGCTCGCAACAATTCTCCCGAGCACAACTTTCCTTGCGTGCTGTCTCAA
GAGCAAGCCACCTTGGTCCTACGCAGACGCCTCGCCGATGCCTTGTACCC
ACGCCACTCCTCCGCCTCGGGGGCGGGGTGTGATCACCACGAGACCCTCA
GACAGAGACATTCAGACGACGGCGACGGGGGCGCCAAAGAACAAGAGGTC
AGTCAGTCCACTCGAGTCAACCTCATTGCCGATGCAGAGGTATTCGTGAC
AGCTCAGCGGTTGTTTGTGCAGAAAACAGAGTTGTTGGCACTACTGTACC
AGTATCAACTGATAAGACTACTGATGCAGAGGTCGGGAAATGAAGACCGC
TCAGCGGTTGATATATTTAGGAAACAGCGTTTAAATACCAGTAGATAGCA
ACTGGTAAGACTGCTGTTACAAGCATTCTCGTGAATAGAAACAACCCAGC
AGTATACCATGCCGCGTACATCGTGAGCGATTTCGTAGCCCAAAACAGCG
CCGGTTTCAGAGTAGTAGGTGATATGACACACTAAACTCGGAATGATAAG
CTGTTGAAGAAGTTAAATTGGACTTGATAGAACATGATTTCAGGAAAATG
ATCTAGAAGGATCCACCCTGATGGATGCGTTAGATTCTGTAACGGTTCGT
AGAATATTTCCTGGATCGGGCCAATTTCTTCGAACGGTTCTCAGGAACGT
TCTCAGGAACGTTCTCAGGAAAATTCCAAGAAAAGATTAGAAAGGTTCCC
GGAACGATTCCGGAACGTGCTTGTGATCTTCTAGAACGGTATTTGGTTCC
CGGAACGGTTCCGGAGTAGTTCTACGGTTCTCTATGGTTTCGTCAGTGAT
CGACGAAAACGCTGACCAGGCAGAGCGCACACACCCCCACCGGAGCTCAC
TATGGTGCCTGCCCAGCTCAACAATACAACAGCATTGTGCAACATACAAA
TCTCTTTTATCATTTCTTTTTGAACCAATTTCCATTTGGTTGTAGACTCT
CCGCACTCCTGCCACAAATGTGCGGCACAGGCTTCTGTTGCCTTGCTCAT
TGCTGTACTACTGCCGTAGCACCGATCACTTGGACATACAGTGCTGTACT
ACTGCCGTAGCACCGATCACTTGGACATAACAGACTGCGGCCTTTGCGTC
ATCAGTGTTATCTTGTTTTTGGTGAGGACATATTTGCAGCAGATCAGACT
TTCGCTTAAAATAATGCTCCAAGCAATCTAGCACAGTTCTTTTTTCAAAG
AAGTAGTGAACGGTTGCGGTCGCTCTTCCACGCAATCGCTGCCCTGTGTT
GCCGCCTATGGCGATAGGTTCTTTAGTGCAGACCTGCTTGCATGGGAACG
CTCTGCGGTTTGTTGCCACTGTCGCTAGTGCTGAACCTGTATCGTCGTAA
CGTTTTCGGTGGAGACGTGCTTGAATGGGAACAACAGCAGTAGGAGCAGC
AGCGGTAGCGACACCGCACATTCGAAAGACCTCCATGCACGCCCCGTCAG
CGACATATCACGCGCAGCACAAGCAGGGACGTGCATCACGATATGCACGT
CAGCCGCCGTCATCCTCGTTGCTTTTCGGGCGCATTGATAGCACGCCACA
ATATAGACGAAAGGCAAAGTCTCAGCCATTCTCTCTCTCTCTCTCTCTGT
GTGTCCCTCCTTGTCTCTTCTCTCTCTCTCACACACACACTGGACGGGTT
CATTTCGTCTCCCTGGAGCCCGTGCTTCACACACCTATTTTTTTTTGCCT
CATTTGTTCATTCCATCTTCTTCTTCCTCCTCCTACCCCCCCCTACCGCC
CCGATGCAAAGGAGGCGAACCTACTGATGACCACAAAGAAGGCCTGTTAT
GGCCCACCGCGCTTGTTCGACTCGGAGTGGCGATTTCCTGAGACCGCGGT
AGAGAAAAAGTCGATGGCCGTGTTCGAGGATCTGTGGGCCAAAGGGCTGT
GCGCGGCCAGCGGTAGTAATTACGCCGCGGATTTCGTGGTGTACAACGGT
GAGACGAGACTACGCTTGGTTTGACCGCCAAGTGATTCCGGAGTGTTGTT
CTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGGTGTTGTTGTTGATGTTCT
TGATCTTGATCTTGCTTTTTTCGTCTTGACTCTGAAGAAAGGATCTCATC
TCTACCATCCACCTCTTTGTCGCCAGTAGGAATGAGCTGCCGTCGCGAGA
ATCCAGGCTCAGGCCAAAGTACGGAACGAGTTCAGAGTAAAATGCGTTTA
CAAGTAGTGCAGAAATATTCACGGAATAGCCCGTTTCAGTATCTCGGTTA
CCCTCCACGCACAGGAATAGCTGATGTGTTCTTTGTTGGATCCGATTATG
TATTTTTACGAGCTTTCCCGTTCACTGCTCGCTGATGGCTAACGCCTATT
GTACGCCACCACACCCCACGCACACGTGCGCGTCTCCTTTCTTCCCGTCT
TGTAAGGTCCTCCAACAGAGTGCCACTCGGTCGCCGCCGTGATGATCAGC
CGAGGGGCCAGCGACGAACTGTCCCCGGCGGAGGTGTCCGGCTTCGCTCG
AGTGCAGCAAGCGGTGGGGAAGCGGGCGGTCATCGCGACGGCCCCCCTCG
CCACGAATGACACGTCGCCGGTGGTGGTCGGGGGAAGTACGCTGGCTTCG
GCCACGGCGGCTGCAGCGGCGGTGGTGGCGTCCCGTGACGGCGAACGGGG
ACCGACCGGGGTCGAAGGCCGGGCAACCGCGCCTCGTCGGCATGCAGTTG
GAAAAGAAGCAACATTAGGCACAGTTTCGGCGACGGCATTAGAAGAACCG
CCAACACCAGCACCCGCCGCAGTGGATGCGGCGGCGGCGGCGGAAGCAGC
GGCAGCAGCAGCAGCAGCAGCGAATGACGGCGTGCGTTACATCACGCTGC
AGTTTCATTCCGTTAGCAGCAGGGTGTGAGCAGAAAAGGGTCCAGGGTGT
CGTAGACTAAACGGTGTGTTTCGGTCGCATGCCGGCCGTCGGGCGGTGGC
ACGGTCAGCGGTGGCTTGTTGTGCTGTGCGGGCGAAGGGCGTGGCGCAGA
TGTGATGGGGGCGAAAAAAGGCTTGTGTGAAGCAACGGGGAGGTGGATGC
TAGGATGTCGTTATTTCCACGAGCGGATTTCATACGGAGAGAGAGAGAGA
AAGGTACGACAGGGTTTGTTTGTGCGTCGCGCAGTGCACTCCCCTCCTCC
CCCCGCGCCCCCTTGAAACTCGAGCTTCAGTTACAGAGGACCTAGAACCT
CTGATTGCATTGTGCGTGCTTCCATCAAGCCTGGTCACATGAGCCAGCTA
ATGTGGTTATTTCGCCAGTCAAAGTCCGCCTTACCTTGTAAGCGATGCTT
GTACATGCGGTGGACTTTGACCACAACCACATGGGCGGTGATGCATACGT
GGCCACGCATGATTTCACGATTTGTAGTGCGTGCGATTGACCAAGGGTTC
GGCGTAAACCTGATTGACGATGGAAGGGAGGAGGGCGGGAGTGGTGGGTG
ACGTGAGTGGGCGGGGGCGGAGTCTTGAATGCGTATGAAGGAAGTGCATT
GCACACCAGCCATACATGTGCTTTTCGCATGAAGACTATGTAGGCATTCG
CCTCATAGTAGTGGGAACGTATGCATATCCTGCCAGGACTGAGGCGCGAG
GAAGACAGACCAGTCAATGTAGTTACATTGCTCTTGAGCTAGCTAGATAG
TAGGGTGGTGTCCGGCCGGCGCCGCGCTGGTCAGGTTAGGTCAGGTTTAG
GGCTCTTTGCCCGCGGAAGAGTTTGGGGTCAGGGTTGAATATTTTTGCAC
CCCCTGGTGACTATGTAGCTTGTTGGACTAGATAGCTTTCCGTGTGGCCC
GTGGGTATGGGGCGTAGACTATACCAGTTTGTAGTCGAGGCGCGAAAGGC
TGGTGCAGCAGTATGTTCGGCTACATTTACAAAGAAGGGGTCAGAGAAGC
CGGTGTAAATAATGGGCAGTGAGGGTGTGCGCCAAATGATTATGTAAGTT
GCAGCAGTGGGTGCCCTTTTAGCGCTTTCCATCCAGGCCAGTACCGGAAA
CGAGAGAAAAACTCACTTTGCAAGAAAAGCTCGCTTTCGCCGGGTTCGAA
CATGTACCCAATGTGAACATATACGCATCAACCCCCCACGAAGACAC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig150:24239..29135- >mRNA_E-fasciculatus_F_contig150.3546.1 ID=mRNA_E-fasciculatus_F_contig150.3546.1|Name=mRNA_E-fasciculatus_F_contig150.3546.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig150:24239..29135- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGACCACAAAGAAGGCCTGTTATGGCCCACCGCGCTTGTTCGACTCGGA GTGGCGATTTCCTGAGACCGCGGTAGAGAAAAAGTCGATGGCCGTGTTCG AGGATCTGTGGGCCAAAGGGCTGTGCGCGGCCAGCGGTAGTAATTACGCC GCGGATTTCGTGGTGTACAACGATGACCACAAAGAAGGCCTGTTATGGCC CACCGCGCTTGTTCGACTCGGAGTGGCGATTTCCTGAGACCGCGGTAGAG AAAAAGTCGATGGCCGTGTTCGAGGATCTGTGGGCCAAAGGGCTGTGCGC GGCCAGCGGTAGTAATTACGCCGCGGATTTCGTGGTGTACAACGGTCCTC CAACAGAGTGCCACTCGGTCGCCGCCGTGATGATCAGCCGAGGGGCCAGC GACGAACTGTCCCCGGCGGAGGTGTCCGGCTTCGCTCGAGTGCAGCAAGC GGTGGGGAAGCGGGCGGTCATCGCGACGGCCCCCCTCGCCACGAATGACA CGTCGCCGGTGGTGGTCGGGGGAAGTACGCTGGCTTCGGCCACGGCGGCT GCAGCGGCGGTGGTGGCGTCCCGTGACGGCGAACGGGGACCGACCGGGGT CGAAGGCCGGGCAACCGCGCCTCGTCGGCATGCAGTTGGAAAAGAAGCAA CATTAGGCACAGTTTCGGCGACGGCATTAGAAGAACCGCCAACACCAGCA CCCGCCGCAGTGGATGCGGCGGCGGCGGCGGAAGCAGCGGCAGCAGCAGC AGCAGCAGCGAATGACGGCGTGCGTTACATCACGCTGCAGTTTCATTCCG TTAGCAGCAGGGTGTGAGTCCTCCAACAGAGTGCCACTCGGTCGCCGCCG TGATGATCAGCCGAGGGGCCAGCGACGAACTGTCCCCGGCGGAGGTGTCC GGCTTCGCTCGAGTGCAGCAAGCGGTGGGGAAGCGGGCGGTCATCGCGAC GGCCCCCCTCGCCACGAATGACACGTCGCCGGTGGTGGTCGGGGGAAGTA CGCTGGCTTCGGCCACGGCGGCTGCAGCGGCGGTGGTGGCGTCCCGTGAC GGCGAACGGGGACCGACCGGGGTCGAAGGCCGGGCAACCGCGCCTCGTCG GCATGCAGTTGGAAAAGAAGCAACATTAGGCACAGTTTCGGCGACGGCAT TAGAAGAACCGCCAACACCAGCACCCGCCGCAGTGGATGCGGCGGCGGCG GCGGAAGCAGCGGCAGCAGCAGCAGCAGCAGCGAATGACGGCGTGCGTTA CATCACGCTGCAGTTTCATTCCGTTAGCAGCAGGGTGTGA back to top
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