mRNA_E-fasciculatus_F_contig1499.3534.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1499.3534.1
Unique NamemRNA_E-fasciculatus_F_contig1499.3534.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1499.3534.1 vs. uniprot
Match: D7FNG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 7.090e-123
Identity = 194/202 (96.04%), Postives = 199/202 (98.51%), Query Frame = 1 
Query:   58 QAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDINEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPSSTAATVGSSQ 663
            QAMLQEFLRSR+GNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSG+VVVKGFRAKLPPQAVSELV +SDELDINEVVCV+LWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTT PSSTAA +GSSQ
Sbjct:   11 QAMLQEFLRSREGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGSVVVKGFRAKLPPQAVSELVALSDELDINEVVCVDLWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTSPSSTAAMLGSSQ 212
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BLAST of mRNA_E-fasciculatus_F_contig1499.3534.1 vs. uniprot
Match: A0A6H5L7W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 3.650e-116
Identity = 185/219 (84.47%), Postives = 189/219 (86.30%), Query Frame = 1 
Query:    7 QSQDAVGLDHNVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDINEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPSSTAATVGSSQ 663
            +SQDAVGLDH+VSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDR ALQSG+VVVKGFRAK                             VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPP+STAATVGSSQ
Sbjct:    2 ESQDAVGLDHDVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRTALQSGSVVVKGFRAK-----------------------------VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPTSTAATVGSSQ 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1499.3534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNG7_ECTSI7.090e-12396.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W6_9PHAE3.650e-11684.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1499contigE-fasciculatus_F_contig1499:114..3499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.7
Seed ortholog evalue7.4e-102
Seed eggNOG ortholog2880.D7FNG7
EggNOG OGs2CAJ9@1,2SW6E@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size663
Cds size663
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1499.3534.1prot_E-fasciculatus_F_contig1499.3534.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1499 114..3499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927977.1221817-CDS-E-fasciculatus_F_contig1499:113..2961622927977.1221817-CDS-E-fasciculatus_F_contig1499:113..296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 114..296 -
1695995775.3193269-CDS-E-fasciculatus_F_contig1499:113..2961695995775.3193269-CDS-E-fasciculatus_F_contig1499:113..296Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 114..296 -
1622927977.1341991-CDS-E-fasciculatus_F_contig1499:964..11111622927977.1341991-CDS-E-fasciculatus_F_contig1499:964..1111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 965..1111 -
1695995775.3306725-CDS-E-fasciculatus_F_contig1499:964..11111695995775.3306725-CDS-E-fasciculatus_F_contig1499:964..1111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 965..1111 -
1622927977.147242-CDS-E-fasciculatus_F_contig1499:1705..17921622927977.147242-CDS-E-fasciculatus_F_contig1499:1705..1792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 1706..1792 -
1695995775.3406584-CDS-E-fasciculatus_F_contig1499:1705..17921695995775.3406584-CDS-E-fasciculatus_F_contig1499:1705..1792Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 1706..1792 -
1622927977.1589792-CDS-E-fasciculatus_F_contig1499:2207..23931622927977.1589792-CDS-E-fasciculatus_F_contig1499:2207..2393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 2208..2393 -
1695995775.3557844-CDS-E-fasciculatus_F_contig1499:2207..23931695995775.3557844-CDS-E-fasciculatus_F_contig1499:2207..2393Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 2208..2393 -
1622927977.245256-CDS-E-fasciculatus_F_contig1499:3439..34991622927977.245256-CDS-E-fasciculatus_F_contig1499:3439..3499Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 3440..3499 -
1695995775.36588-CDS-E-fasciculatus_F_contig1499:3439..34991695995775.36588-CDS-E-fasciculatus_F_contig1499:3439..3499Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1499 3440..3499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1499.3534.1

>prot_E-fasciculatus_F_contig1499.3534.1 ID=prot_E-fasciculatus_F_contig1499.3534.1|Name=mRNA_E-fasciculatus_F_contig1499.3534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=221bp
MEQSQDAVGLDHNVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDL
ICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDI
NEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRN
LLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLG
PEGIRRTTPPSSTAATVGSSQ
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mRNA from alignment at E-fasciculatus_F_contig1499:114..3499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1499.3534.1 ID=mRNA_E-fasciculatus_F_contig1499.3534.1|Name=mRNA_E-fasciculatus_F_contig1499.3534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3386bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1499:114..3499- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGCAGAGCCAGGATGCCGTGGGCCTCGACCACAACGTCTCACTCAC
GGACCTTCAGGTGCACTCGTGTATGTGGTTGTGCGTGTACGTCGTTGCTA
TCGCAGCAGTTTTTTTTCGTTTTTGGTCGTTGGCGGAATTTGGCCATGGC
ATGGTTTGTTTCAAGGACGCGGTCTGTCCTACACCCGCGGTGCTGCTCGC
AAGAGGCGGGCACCTCGGTTGCTGTGTAAGTACTCCTGGAATTGCTACGT
GGATACGACCCCCGTAGTCAGCGCTCCTTCCGCCCGTATATCCTCGTACG
TTTGCACGGCTCCAGACATAATTGTTGGTGTCAAATGTAAGGGCGGCGAA
TACTATTTAGTGTACAATTTGTAGTACCCGATGGTCTGCAACGGCAGTGC
GGGCGCTACTACTGCTGTAGACTACATGACGAGCATTTACAGCAGTAGGC
CTGCTCTTAATCTACGGTATGTAGAGAACACCGCTCCGACTCTCAGATAT
ACCCACACAACATGTTTCATGTCTGAAATGATACCTGCGCGTGCCCCAGG
CTGTCAACCATCTGTGGCCTGCGTTTTTTGCTTTTTTGCTGCGATCCTCA
TCTTTCCCGCAAAAGCCGTGCTTACAGCTTACAGCATCATGCTAAATTTG
CGAGAGGAATGCATCTACATTACCGCAATAGGTGCGCGCGGAGGTACCCT
CTGTGTCCGACACCATTCGAGTAGGTTACGGACACAACACTACTCCGCTG
GCGTTGGTTCTCTTTGTCGTTACGCAGCAGCGAGAATCAGGGCGGGTCTC
TCCCGCTGCAGACAGCATTGTTGGTGCTCAAAAAAAGTCTCAGACTGCGT
TGTCTACAATTGGGCGATGTGCTTATACCGCCGTTTGACATGCACACCCC
AATACATGCTTGTGCCCGCACAGCCCCACACACACGTTCGAGGATTAGCT
TCGTCTTGGTCTTTGAACTTTGCCCAAGCCCCTTTACCGTCCGCCTCGTC
CTCTTTTCTAAACCTTAACCTTCCCCACCCCCGCTCTTTCGCAACAACAC
TGCATGTGTCTACCGCTGCAAAAAATCCGCACTAAATAAATACCAATGTT
TTTCAGGCAATGCTTCAGGAGTTCCTCCGATCAAGAGACGGCAACGAGAT
GATCGGAGATCTCTCGGAGGGACTAGAGGCCCGTCGGGATGACCTCATCT
GCCCGGACCCGTCCCGGTGCCACCCCAGGACGCCAGAGGACCGAGCGGCC
CTGCAGAGTGGAACCGTGGTGGTAAAGGGCTTCCGCGCGAAGGTATGTGA
GGCTACTATTATACAGCGCGGACGGTCGGGTGTGTTGGGTGGTGGCATGT
GCAACGGCATCAACAGGAGTTAGTACATGGGCTGCAGGCGTTTTGTTGGC
GTGGTTTGGCAGTAGTCCCGTTAACTTTTAAATATGTGCAGATGGGATTT
TTAGCTCGATCCCAAAGTTTCCCAGCCCACTCTTGCTCCTTGGTTCTCGT
GTTGGTCCTGTGCTCTTTCTAGCGCCGACAAGCACAACCGTACCCACGTC
ATCTGTAAAGTTTTGGTTTTGACAAGAAAGGAGATGAAAAGCGGTCTCGG
ATCGTGTCCCCCCTGTGCCGGCACATGTGTGTATGTTTCACTTACTGGCA
TATCGTGCTCCCCGTGCCGCCTTTGGTATGCTGCTGGCGTTGTGGATACG
AACCAAGCTTCCACCGCAAGCGGTGTCGGAACTCGTGGTGATGTCTGACG
AGCTGGACATCAACGAGGTGGTGTGCGTGGAGCTGTGGTCACAGGTGAAG
GCGGCGTGATTTCTTGTCTCGCCTGAAACTACAGCATAGGTTGTACGCAC
GCATGGATCTACAACAGCGACAAGTGTTTGTGTTACGGGAGTGAAAAGTC
AACGAGTGTTCTTGCCTTTCTTCATAGAGACTTGAAAGTATCGTGGAAAC
AGAGAGGGCGTGTGTAGTGCTACTTATCTATCTCTTTTGGCCGCAGGTGC
AAGCAATTCCCCCCGCCCCCCGCATCTCTCGCCCCTTGCCACGGCGTGCT
GGTGTGTTAGCACATATCCGCCTGGCTGCATGGCTGCGGCAAGAGTGACT
GCAAGGGCAGGAGGGCGACGAGAGTTATCCTTATCCTTCACCCGTGTGCT
TGTAAGAGCAACCGGCTTGTTGGTGTCACGGACCGCATGATGTTAATCTG
GGGGCTTGGCAGACGTCGAGTATGTGACAACAACGCGTTGCCGTCTCTGT
TCTCTCTCTTTCTCCTTCTCTCTCTCTCTGTCCTTCCGTCCGTCCGTCCG
TCTGTCTTTGCTTCTCTATCTTTTTCCGGCTCTGTCTCTCTCTCTCCTTC
TCTTTCTCTGTCTGCCTATCGGTCTGTGTGTGTATTAGGTGAATGAGCCT
TGGCAGAGGCGGGCGCTGGAGAAAAGGCTGTCCGACCCGGCGGGAAGCCT
GAGCGAGGACCTTCCGCTGGCCGCTAGGAAGCTCTTCTATCTGGAACGCC
GCAACCTGCTCATGTTCGAAGCGGAGCTGTTCAAGGTGATAGTTTATGAC
GTACTTCATAACAAAATTGGATTTGGAAGGATCTACGGCGAACGGTGAAC
AGTCGGGGGGTTCTCCGCTGTGTGCTACGCTTATATGTTGAAAGTGTGTA
CGTGACCCACAGCACCATCGATACATAGTTTTCGTGATTTGCAGGTATTC
CAACAGTAGCCCGGTCAAGTATTTAGGGACGAGGAGCTCCGCGAGGTAGT
CTGTAGCGGCTTTTTGCGTGGCTGGTTTCGTGCTAAGGAGGAGCCTCGAA
CGCACTAAGCCGACCTGGCAGCACTTGCTTTTTCCGCGATATCTATAAAA
AGCGAAAGTCACTATTATAGTACCTTTACCCCCTACTGTGTGCTAGCTAT
TTTGTTGTTTTCGCGTTCGGTACTATCGCTGATGTTGTTGACAACACGAT
GTCGTCGGCACGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAGC
TGCTGTGTTCTCTGTCGGGGGAGGCGACAAGGCTGCCCTAATAGTGCAAT
ACCACTCCCTGCCGCTGGTAAAAAGAGAGAGGTGTGATGGGAGCTAGCAG
TGTTGCTCGTTTTCTCGTTGCCATTCAATTATTGTATTTCGTTTCCCCGA
CGTCTCGTTGTTGTTGTTGTTGTTACGGATTGCCGTTCTGTTCTTTCTGC
AAGGCGGCACTGGTGGAAGACCTGTCTCCGGCCAAGAAGGCCGTGATCGA
CCGCGAGATCTTTTCCCTCCTGGAGAAGGACCTAGCTTCCAACCTCATGA
GCTTCGTCGCCAAGCTCTTGGGCCCCGAGGGGATTCGCCGAACCACGCCC
CCTTCCTCAACGGCAGCGACGGTCGGCAGCTCTCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1499:114..3499-

>mRNA_E-fasciculatus_F_contig1499.3534.1 ID=mRNA_E-fasciculatus_F_contig1499.3534.1|Name=mRNA_E-fasciculatus_F_contig1499.3534.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1499:114..3499- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGCAGAGCCAGGATGCCGTGGGCCTCGACCACAACGTCTCACTCAC
GGACCTTCAGATGGAGCAGAGCCAGGATGCCGTGGGCCTCGACCACAACG
TCTCACTCACGGACCTTCAGGCAATGCTTCAGGAGTTCCTCCGATCAAGA
GACGGCAACGAGATGATCGGAGATCTCTCGGAGGGACTAGAGGCCCGTCG
GGATGACCTCATCTGCCCGGACCCGTCCCGGTGCCACCCCAGGACGCCAG
AGGACCGAGCGGCCCTGCAGAGTGGAACCGTGGTGGTAAAGGGCTTCCGC
GCGAAGGCAATGCTTCAGGAGTTCCTCCGATCAAGAGACGGCAACGAGAT
GATCGGAGATCTCTCGGAGGGACTAGAGGCCCGTCGGGATGACCTCATCT
GCCCGGACCCGTCCCGGTGCCACCCCAGGACGCCAGAGGACCGAGCGGCC
CTGCAGAGTGGAACCGTGGTGGTAAAGGGCTTCCGCGCGAAGCTTCCACC
GCAAGCGGTGTCGGAACTCGTGGTGATGTCTGACGAGCTGGACATCAACG
AGGTGGTGTGCGTGGAGCTGTGGTCACAGCTTCCACCGCAAGCGGTGTCG
GAACTCGTGGTGATGTCTGACGAGCTGGACATCAACGAGGTGGTGTGCGT
GGAGCTGTGGTCACAGGTGAATGAGCCTTGGCAGAGGCGGGCGCTGGAGA
AAAGGCTGTCCGACCCGGCGGGAAGCCTGAGCGAGGACCTTCCGCTGGCC
GCTAGGAAGCTCTTCTATCTGGAACGCCGCAACCTGCTCATGTTCGAAGC
GGAGCTGTTCAAGGTGAATGAGCCTTGGCAGAGGCGGGCGCTGGAGAAAA
GGCTGTCCGACCCGGCGGGAAGCCTGAGCGAGGACCTTCCGCTGGCCGCT
AGGAAGCTCTTCTATCTGGAACGCCGCAACCTGCTCATGTTCGAAGCGGA
GCTGTTCAAGGCGGCACTGGTGGAAGACCTGTCTCCGGCCAAGAAGGCCG
TGATCGACCGCGAGATCTTTTCCCTCCTGGAGAAGGACCTAGCTTCCAAC
CTCATGAGCTTCGTCGCCAAGCTCTTGGGCCCCGAGGGGATTCGCCGAAC
CACGCCCCCTTCCTCAACGGCAGCGACGGTCGGCAGCTCTCAGGCGGCAC
TGGTGGAAGACCTGTCTCCGGCCAAGAAGGCCGTGATCGACCGCGAGATC
TTTTCCCTCCTGGAGAAGGACCTAGCTTCCAACCTCATGAGCTTCGTCGC
CAAGCTCTTGGGCCCCGAGGGGATTCGCCGAACCACGCCCCCTTCCTCAA
CGGCAGCGACGGTCGGCAGCTCTCAG
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